Wall clock time and date at job start Mon Mar 30 2020 07:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33380 * 122.55858 * 2 1 4 4 S 1.75856 * 109.70084 * 179.79543 * 3 2 1 5 5 C 1.75860 * 91.04415 * 0.29135 * 4 3 2 6 6 C 1.33777 * 109.60392 * 359.70696 * 5 4 3 7 7 N 1.40817 * 122.62149 * 180.24787 * 6 5 4 8 8 C 1.34769 * 119.99538 * 353.76024 * 7 6 5 9 9 O 1.21602 * 120.00904 * 5.39477 * 8 7 6 10 10 N 1.34784 * 119.99929 * 185.40422 * 8 7 6 11 11 C 1.47067 * 136.05481 * 359.62403 * 10 8 7 12 12 C 1.53747 * 87.88891 * 152.96520 * 11 10 8 13 13 C 1.50698 * 114.27027 * 139.79286 * 12 11 10 14 14 H 1.08008 * 119.99878 * 266.47792 * 13 12 11 15 15 C 1.37879 * 120.00042 * 86.47291 * 13 12 11 16 16 N 1.31515 * 119.99592 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00087 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.46925 * 89.99634 * 17 15 13 19 19 H 1.48495 * 109.46906 * 209.99770 * 17 15 13 20 20 H 1.48503 * 109.46738 * 330.00008 * 17 15 13 21 21 C 1.47065 * 136.06069 * 179.97438 * 10 8 7 22 22 H 1.09001 * 109.46992 * 269.97811 * 1 2 3 23 23 H 1.08994 * 109.47244 * 29.97835 * 1 2 3 24 24 H 1.09004 * 109.47076 * 149.98114 * 1 2 3 25 25 H 1.07998 * 125.14537 * 0.05200 * 3 2 1 26 26 H 1.08001 * 125.19766 * 179.97438 * 5 4 3 27 27 H 0.96993 * 120.00025 * 173.75349 * 7 6 5 28 28 H 1.09001 * 113.46638 * 267.70239 * 11 10 8 29 29 H 1.09005 * 113.46837 * 38.13275 * 11 10 8 30 30 H 1.09006 * 114.39716 * 272.67698 * 12 11 10 31 31 H 0.97003 * 120.00046 * 180.02562 * 16 15 13 32 32 H 1.09002 * 113.46692 * 321.86215 * 21 10 8 33 33 H 1.08999 * 113.46891 * 92.24191 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2248 1.1242 0.0000 4 16 3.9393 0.7329 0.0059 5 6 3.5793 -0.9885 -0.0008 6 6 2.2539 -1.1698 -0.0004 7 7 1.6625 -2.4478 0.0000 8 6 2.4326 -3.5466 -0.1268 9 8 3.6440 -3.4417 -0.1430 10 7 1.8600 -4.7619 -0.2360 11 6 0.4867 -5.2878 -0.2519 12 6 1.0084 -6.4664 -1.0901 13 6 0.4170 -7.8014 -0.7172 14 1 0.9255 -8.4383 -0.0084 15 6 -0.7732 -8.2097 -1.2809 16 7 -1.2895 -9.3746 -0.9550 17 14 -1.6523 -7.1085 -2.5072 18 1 -1.1813 -7.4218 -3.8801 19 1 -3.1163 -7.3415 -2.4208 20 1 -1.3580 -5.6867 -2.1953 21 6 2.3337 -6.1461 -0.3854 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.8151 2.1234 0.0008 26 1 4.3157 -1.7785 -0.0005 27 1 0.7011 -2.5373 0.0917 28 1 0.1233 -5.5825 0.7326 29 1 -0.2163 -4.6498 -0.7876 30 1 1.0187 -6.2848 -2.1649 31 1 -2.1267 -9.6621 -1.3518 32 1 3.2042 -6.2393 -1.0349 33 1 2.4587 -6.6670 0.5639 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596803094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:50 Heat of formation + Delta-G solvation = 33.039499 kcal Electronic energy + Delta-G solvation = -17572.201929 eV Core-core repulsion = 14725.736293 eV Total energy + Delta-G solvation = -2846.465635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.86195 -40.14049 -38.47669 -35.05125 -34.62559 -31.96622 -30.82949 -28.19493 -26.93080 -26.78990 -24.32411 -22.15668 -20.73590 -20.25083 -19.27039 -19.02816 -17.96207 -17.15314 -16.92814 -16.30022 -15.98690 -15.45425 -15.05558 -14.90476 -14.74891 -14.33012 -14.04336 -13.50975 -13.46364 -13.23421 -13.08091 -12.85033 -12.63733 -12.46788 -11.86173 -11.82281 -11.63798 -11.55560 -11.22295 -10.91774 -10.66236 -9.81446 -9.46801 -8.75324 -8.26814 -6.34964 0.08186 0.68191 1.04042 1.42460 1.43337 1.45356 1.53368 1.55222 2.20860 2.39510 2.79235 3.04966 3.90511 3.97595 4.14860 4.22181 4.37358 4.47197 4.50958 4.60502 4.72375 4.78843 4.80041 4.81962 4.88471 4.98516 5.26714 5.33206 5.36430 5.59976 5.66111 6.13780 6.29455 6.72300 6.93082 7.31690 7.35750 8.88603 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.033932 B = 0.004506 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.987164 B = 6211.784619 C = 6810.481519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.130 4.130 3 C -0.191 4.191 4 S 0.114 5.886 5 C -0.281 4.281 6 C 0.135 3.865 7 N -0.657 5.657 8 C 0.724 3.276 9 O -0.613 6.613 10 N -0.661 5.661 11 C 0.096 3.904 12 C -0.011 4.011 13 C -0.514 4.514 14 H 0.042 0.958 15 C 0.022 3.978 16 N -0.943 5.943 17 Si 0.941 3.059 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.229 1.229 21 C 0.137 3.863 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.062 0.938 25 H 0.202 0.798 26 H 0.174 0.826 27 H 0.417 0.583 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.268 0.732 32 H 0.066 0.934 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 22.266 0.976 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.144 4.144 3 C -0.327 4.327 4 S 0.376 5.624 5 C -0.420 4.420 6 C 0.029 3.971 7 N -0.303 5.303 8 C 0.428 3.572 9 O -0.495 6.495 10 N -0.398 5.398 11 C -0.026 4.026 12 C -0.031 4.031 13 C -0.552 4.552 14 H 0.061 0.939 15 C -0.177 4.177 16 N -0.582 5.582 17 Si 0.764 3.236 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.152 1.152 21 C 0.014 3.986 22 H 0.101 0.899 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.219 0.781 26 H 0.191 0.809 27 H 0.255 0.745 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.444 23.206 0.958 23.480 hybrid contribution -1.945 -1.384 -0.290 2.405 sum 1.499 21.823 0.668 21.884 Atomic orbital electron populations 1.20579 0.87369 1.03890 1.03504 1.18764 0.98903 0.89862 1.06914 1.25653 0.95396 1.02935 1.08724 1.84005 1.06709 0.98015 1.73627 1.26253 0.99711 1.00662 1.15339 1.16847 0.91665 0.84413 1.04217 1.42299 1.10821 1.02247 1.74981 1.15416 0.84293 0.79672 0.77863 1.90660 1.13636 1.84697 1.60525 1.48998 1.12010 1.04124 1.74693 1.23790 0.83068 0.94223 1.01514 1.20690 0.93254 0.93232 0.95900 1.20908 1.06726 1.01577 1.25946 0.93927 1.25858 0.97854 0.95987 0.98001 1.70040 1.20762 1.22118 1.45289 0.85853 0.77278 0.81399 0.79058 1.20198 1.21436 1.15184 1.22934 0.98764 0.76756 1.00109 0.89865 0.88896 0.91951 0.78129 0.80935 0.74495 0.89396 0.90213 0.91514 0.92307 0.91507 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 9.77 71.24 0.70 -0.66 16 2 C -0.13 -2.72 5.81 -20.83 -0.12 -2.84 16 3 C -0.19 -3.40 10.97 66.72 0.73 -2.66 16 4 S 0.11 2.49 23.33 -56.49 -1.32 1.18 16 5 C -0.28 -8.62 10.04 66.81 0.67 -7.95 16 6 C 0.14 3.84 6.55 36.81 0.24 4.08 16 7 N -0.66 -19.57 5.39 -320.24 -1.73 -21.29 16 8 C 0.72 26.88 8.75 179.05 1.57 28.45 16 9 O -0.61 -26.32 13.90 -4.04 -0.06 -26.38 16 10 N -0.66 -24.17 3.69 -876.06 -3.23 -27.40 16 11 C 0.10 3.37 7.31 83.26 0.61 3.98 16 12 C -0.01 -0.45 2.96 -11.13 -0.03 -0.49 16 13 C -0.51 -26.20 9.38 25.60 0.24 -25.96 16 14 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 15 C 0.02 1.14 5.47 84.65 0.46 1.60 16 16 N -0.94 -54.62 13.96 21.45 0.30 -54.33 16 17 Si 0.94 39.06 27.15 68.60 1.86 40.92 16 18 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.23 -8.19 5.72 99.48 0.57 -7.62 16 21 C 0.14 5.29 8.17 83.17 0.68 5.97 16 22 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 24 H 0.06 0.92 7.10 -2.38 -0.02 0.91 16 25 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 26 H 0.17 6.41 5.28 -3.56 -0.02 6.39 16 27 H 0.42 10.15 7.12 -92.71 -0.66 9.49 16 28 H 0.09 3.06 8.10 -2.39 -0.02 3.04 16 29 H 0.08 2.43 7.15 -2.38 -0.02 2.42 16 30 H 0.07 2.71 7.03 -2.38 -0.02 2.70 16 31 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 Total: -1.00 -64.82 291.27 1.91 -62.91 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.34 Total: 20.88 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.74 Total: 3.52 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -4.66 Total: -103.01 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.86 Total: 40.92 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.32 Total: 1.18 kcal Total: -64.82 1.91 -62.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596803094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.945 kcal (2) G-P(sol) polarization free energy of solvation -64.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds