Wall clock time and date at job start Mon Mar 30 2020 07:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.39012 * 119.99664 * 179.97438 * 14 12 2 16 16 N 1.29627 * 124.93953 * 179.71806 * 15 14 12 17 17 C 1.31990 * 116.91013 * 179.81558 * 16 15 14 18 18 C 1.50700 * 122.71102 * 180.22529 * 17 16 15 19 19 C 1.53009 * 117.49746 * 164.01296 * 18 17 16 20 20 C 1.53008 * 117.49720 * 95.35595 * 18 17 16 21 21 C 1.33437 * 114.57124 * 0.47202 * 17 16 15 22 22 S 1.70962 * 124.94545 * 0.02593 * 15 14 12 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 28 28 H 1.08996 * 115.55559 * 309.68599 * 18 17 16 29 29 H 1.08995 * 117.49659 * 359.97438 * 19 18 17 30 30 H 1.08994 * 117.49864 * 145.02556 * 19 18 17 31 31 H 1.09002 * 117.49676 * 214.98005 * 20 18 17 32 32 H 1.08998 * 117.50011 * 359.97200 * 20 18 17 33 33 H 1.07999 * 125.96809 * 179.71728 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1697 -0.9057 3.5895 16 7 1.9205 -0.5444 4.8092 17 6 2.4388 -1.2864 5.7698 18 6 2.2284 -0.9889 7.2321 19 6 2.5495 -2.1011 8.2326 20 6 1.0934 -1.7254 7.9466 21 6 3.1685 -2.3182 5.3414 22 16 3.1568 -2.3015 3.5799 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 1.1494 0.5388 2.5436 28 1 2.4332 0.0372 7.5374 29 1 2.9125 -3.0480 7.8331 30 1 2.9652 -1.8066 9.1962 31 1 0.5518 -1.1838 8.7222 32 1 0.4986 -2.4247 7.3589 33 1 3.6777 -3.0375 5.9656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596895839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:23 Heat of formation + Delta-G solvation = 31.549930 kcal Electronic energy + Delta-G solvation = -17298.445795 eV Core-core repulsion = 14451.915567 eV Total energy + Delta-G solvation = -2846.530228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.12696 -39.23412 -36.74250 -34.19884 -34.00609 -30.77570 -29.00802 -25.48704 -25.28190 -23.56052 -22.48041 -21.76657 -20.61738 -18.89203 -17.84036 -16.74934 -16.32169 -15.79880 -15.63207 -15.16696 -14.83188 -14.55328 -13.70791 -13.37392 -12.96016 -12.71124 -12.54223 -11.79753 -11.66282 -11.34972 -11.09722 -10.97733 -10.80853 -10.72896 -10.56139 -10.47077 -10.16972 -10.10124 -9.44570 -9.16686 -9.03410 -8.88361 -8.50982 -7.89657 -6.17050 -4.22190 1.05689 1.47889 2.19596 2.74730 3.09587 3.27050 3.33509 3.39300 3.40900 3.78411 4.35003 4.44090 4.77345 4.86994 5.16776 5.21491 5.31309 5.48997 5.58425 5.72442 5.76502 5.96044 6.08338 6.12713 6.44599 6.56534 6.64325 6.70137 7.20373 7.40481 7.63674 7.88239 8.04572 8.13709 8.57451 8.86434 9.44224 10.90499 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.049480 B = 0.004170 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.744458 B = 6712.770863 C = 7133.427719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.039 3.961 3 H 0.063 0.937 4 C -0.509 4.509 5 H 0.077 0.923 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.517 3.483 13 O -0.503 6.503 14 N -0.633 5.633 15 C 0.262 3.738 16 N -0.525 5.525 17 C 0.122 3.878 18 C -0.078 4.078 19 C -0.172 4.172 20 C -0.166 4.166 21 C -0.338 4.338 22 S 0.237 5.763 23 H 0.035 0.965 24 H 0.015 0.985 25 H 0.099 0.901 26 H 0.264 0.736 27 H 0.421 0.579 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.181 -3.169 16.332 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 H 0.081 0.919 4 C -0.548 4.548 5 H 0.095 0.905 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.307 3.693 13 O -0.375 6.375 14 N -0.284 5.284 15 C -0.105 4.105 16 N -0.249 5.249 17 C -0.011 4.011 18 C -0.099 4.099 19 C -0.209 4.209 20 C -0.204 4.204 21 C -0.479 4.479 22 S 0.488 5.512 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.259 0.741 28 H 0.135 0.865 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.706 -3.883 15.208 15.788 hybrid contribution -0.243 0.355 0.184 0.468 sum 1.463 -3.528 15.392 15.859 Atomic orbital electron populations 1.21819 0.95788 1.00358 1.01575 1.18942 0.94593 0.97084 0.87545 0.91923 1.21071 1.31844 1.13205 0.88634 0.90473 1.24940 0.94863 0.94964 0.99223 1.69855 1.36587 1.22788 1.23949 0.86386 0.79505 0.79234 0.81748 1.20528 1.21174 1.19608 1.22834 0.78278 0.84548 0.83594 1.90480 1.36588 1.26078 1.84395 1.43710 1.51288 1.30970 1.02407 1.23665 0.99468 0.97660 0.89739 1.66090 1.28617 1.33188 0.96995 1.18763 0.96716 0.92070 0.93516 1.20296 1.04760 0.97884 0.86955 1.23032 0.98830 0.99352 0.99710 1.22976 0.91384 1.03327 1.02664 1.27135 1.12299 1.07101 1.01337 1.85069 1.45361 1.22937 0.97864 0.94574 0.96549 0.88215 0.92664 0.74056 0.86525 0.88475 0.88256 0.88395 0.88721 0.81436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.04 0.92 2.64 -92.92 -0.25 0.68 16 3 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 4 C -0.51 -13.60 8.37 -34.44 -0.29 -13.89 16 5 H 0.08 2.16 6.75 -52.49 -0.35 1.80 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -23.97 11.32 55.43 0.63 -23.34 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.52 11.12 7.11 -10.99 -0.08 11.05 16 13 O -0.50 -11.82 12.93 5.56 0.07 -11.75 16 14 N -0.63 -11.57 5.30 -13.07 -0.07 -11.64 16 15 C 0.26 4.75 8.19 -87.34 -0.72 4.03 16 16 N -0.53 -9.08 10.58 -11.28 -0.12 -9.20 16 17 C 0.12 1.83 6.41 -84.20 -0.54 1.29 16 18 C -0.08 -0.91 6.30 -91.76 -0.58 -1.49 16 19 C -0.17 -1.53 9.92 -26.69 -0.26 -1.79 16 20 C -0.17 -1.64 10.24 -26.69 -0.27 -1.91 16 21 C -0.34 -4.78 10.50 29.05 0.31 -4.48 16 22 S 0.24 3.99 20.22 -107.50 -2.17 1.82 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.02 0.29 7.56 -51.93 -0.39 -0.11 16 25 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 26 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.42 6.74 8.24 -40.82 -0.34 6.40 16 28 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.10 0.83 6.78 -51.93 -0.35 0.48 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.17 1.88 6.94 -52.49 -0.36 1.52 16 LS Contribution 294.56 15.07 4.44 4.44 Total: -1.00 -28.83 294.56 -8.47 -37.31 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.79 Total: 4.09 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.44 Total: -7.62 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.44 Total: -44.18 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.17 Total: 1.82 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.83 -8.47 -37.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596895839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.856 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds