Wall clock time and date at job start Mon Mar 30 2020 07:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.39012 * 119.99664 * 179.97438 * 14 12 2 16 16 N 1.29627 * 124.93953 * 179.71806 * 15 14 12 17 17 C 1.31990 * 116.91013 * 179.81558 * 16 15 14 18 18 C 1.50700 * 122.71102 * 180.22529 * 17 16 15 19 19 C 1.53009 * 117.49746 * 164.01296 * 18 17 16 20 20 C 1.53008 * 117.49720 * 95.35595 * 18 17 16 21 21 C 1.33437 * 114.57124 * 0.47202 * 17 16 15 22 22 S 1.70962 * 124.94545 * 0.02593 * 15 14 12 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 28 28 H 1.08996 * 115.55559 * 309.68599 * 18 17 16 29 29 H 1.08995 * 117.49659 * 359.97438 * 19 18 17 30 30 H 1.08994 * 117.49864 * 145.02556 * 19 18 17 31 31 H 1.09002 * 117.49676 * 214.98005 * 20 18 17 32 32 H 1.08998 * 117.50011 * 359.97200 * 20 18 17 33 33 H 1.07999 * 125.96809 * 179.71728 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1697 -0.9057 3.5895 16 7 1.9205 -0.5444 4.8092 17 6 2.4388 -1.2864 5.7698 18 6 2.2284 -0.9889 7.2321 19 6 2.5495 -2.1011 8.2326 20 6 1.0934 -1.7254 7.9466 21 6 3.1685 -2.3182 5.3414 22 16 3.1568 -2.3015 3.5799 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 1.1494 0.5388 2.5436 28 1 2.4332 0.0372 7.5374 29 1 2.9125 -3.0480 7.8331 30 1 2.9652 -1.8066 9.1962 31 1 0.5518 -1.1838 8.7222 32 1 0.4986 -2.4247 7.3589 33 1 3.6777 -3.0375 5.9656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596895839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:22 Heat of formation + Delta-G solvation = 14.773132 kcal Electronic energy + Delta-G solvation = -17299.173291 eV Core-core repulsion = 14451.915567 eV Total energy + Delta-G solvation = -2847.257725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.55355 -40.63591 -37.72154 -35.93440 -35.66366 -32.65031 -30.29332 -27.27659 -26.69906 -25.06716 -23.21340 -23.07788 -22.17502 -20.15848 -19.23299 -18.39123 -17.93239 -17.38493 -16.83394 -16.62684 -16.43909 -15.73919 -15.14686 -15.03169 -14.51565 -14.14743 -13.68155 -13.50316 -13.04330 -12.77339 -12.68051 -12.43498 -12.32376 -12.21556 -12.12415 -11.95548 -11.37573 -11.23897 -11.11549 -10.76807 -10.73016 -10.47498 -10.20436 -9.18987 -8.18646 -6.29897 -0.25401 0.17121 0.95939 1.34311 1.42896 1.44059 1.53779 1.67801 1.94530 2.43714 2.92489 3.12477 3.41731 3.98545 4.04394 4.09227 4.26106 4.36058 4.51575 4.66321 4.79713 4.83380 4.88307 4.92065 5.02307 5.20850 5.24887 5.29248 5.39514 5.69278 5.77650 6.02482 6.22027 6.76371 6.79572 6.94132 7.39032 8.87462 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.049480 B = 0.004170 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.744458 B = 6712.770863 C = 7133.427719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.037 3.963 3 H 0.055 0.945 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.529 6.529 14 N -0.622 5.622 15 C 0.235 3.765 16 N -0.528 5.528 17 C 0.105 3.895 18 C -0.103 4.103 19 C -0.149 4.149 20 C -0.165 4.165 21 C -0.312 4.312 22 S 0.211 5.789 23 H 0.028 0.972 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.266 0.734 27 H 0.430 0.570 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -3.665 18.301 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.015 3.985 3 H 0.072 0.928 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.313 3.687 13 O -0.404 6.404 14 N -0.273 5.273 15 C -0.132 4.132 16 N -0.252 5.252 17 C -0.026 4.026 18 C -0.123 4.123 19 C -0.186 4.186 20 C -0.202 4.202 21 C -0.452 4.452 22 S 0.461 5.539 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.270 0.730 28 H 0.138 0.862 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.826 -4.358 17.220 17.856 hybrid contribution -0.273 0.501 -0.269 0.631 sum 1.553 -3.857 16.951 17.454 Atomic orbital electron populations 1.21646 0.94541 1.00016 1.02190 1.18828 0.95587 0.96363 0.87688 0.92752 1.21236 1.32171 1.13111 0.90471 0.92425 1.25570 0.95024 0.95629 1.01448 1.69936 1.36914 1.23390 1.24574 0.85558 0.78741 0.78444 0.78953 1.20026 1.20257 1.20062 1.22280 0.78142 0.84133 0.84134 1.90473 1.37715 1.27072 1.85160 1.43249 1.51133 1.31089 1.01835 1.23737 1.01029 0.98570 0.89820 1.66121 1.28400 1.33653 0.97053 1.19351 0.96579 0.91996 0.94706 1.20403 1.07426 0.99192 0.85326 1.23178 0.97691 0.98183 0.99566 1.23051 0.91895 1.02813 1.02482 1.27415 1.11183 1.07112 0.99497 1.85121 1.45368 1.22872 1.00567 0.95279 0.93050 0.90368 0.92434 0.72990 0.86197 0.87888 0.85860 0.86656 0.89827 0.78136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.87 71.98 0.64 -4.83 16 2 C 0.04 1.73 2.64 -12.29 -0.03 1.70 16 3 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 4 C -0.53 -29.01 8.37 25.60 0.21 -28.79 16 5 H 0.06 3.32 6.75 -2.91 -0.02 3.30 16 6 C 0.02 1.24 5.30 84.66 0.45 1.69 16 7 N -0.91 -49.07 11.32 21.45 0.24 -48.83 16 8 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.52 22.87 7.11 87.66 0.62 23.49 16 13 O -0.53 -25.48 12.93 -3.03 -0.04 -25.52 16 14 N -0.62 -22.76 5.30 -313.65 -1.66 -24.42 16 15 C 0.24 8.45 8.19 179.20 1.47 9.92 16 16 N -0.53 -17.75 10.58 -189.59 -2.01 -19.76 16 17 C 0.11 2.96 6.41 41.45 0.27 3.23 16 18 C -0.10 -2.13 6.30 -11.53 -0.07 -2.20 16 19 C -0.15 -2.07 9.92 30.62 0.30 -1.77 16 20 C -0.16 -2.78 10.24 30.62 0.31 -2.47 16 21 C -0.31 -8.14 10.50 66.73 0.70 -7.44 16 22 S 0.21 7.00 20.22 -56.49 -1.14 5.86 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.81 7.56 -2.39 -0.02 1.80 16 25 H 0.08 3.77 6.07 -2.39 -0.01 3.75 16 26 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 27 H 0.43 13.61 8.24 -92.71 -0.76 12.84 16 28 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.10 1.33 6.78 -2.39 -0.02 1.31 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.20 3.77 6.94 -2.91 -0.02 3.75 16 Total: -1.00 -62.05 294.56 2.67 -59.37 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.38 Total: 15.61 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.87 Total: -7.49 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.42 Total: -93.00 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.04 Total: -25.52 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -1.14 Total: 5.86 kcal Total: -62.05 2.67 -59.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596895839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.145 kcal (2) G-P(sol) polarization free energy of solvation -62.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds