Wall clock time and date at job start Mon Mar 30 2020 07:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 103.00223 * 2 1 4 4 C 1.39178 * 119.63770 * 179.97438 * 3 2 1 5 5 C 1.38220 * 119.16731 * 179.97438 * 4 3 2 6 6 C 1.39436 * 118.45295 * 0.02562 * 5 4 3 7 7 N 1.40189 * 120.39690 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00122 * 34.96487 * 7 6 5 9 9 O 1.21297 * 120.00158 * 355.33193 * 8 7 6 10 10 C 1.50702 * 120.00283 * 175.33482 * 8 7 6 11 11 H 1.08998 * 109.47128 * 299.99520 * 10 8 7 12 12 C 1.53001 * 109.46988 * 59.99758 * 10 8 7 13 13 C 1.50702 * 109.47243 * 179.97438 * 10 8 7 14 14 H 1.08004 * 119.99993 * 359.97438 * 13 10 8 15 15 C 1.37870 * 119.99928 * 179.97438 * 13 10 8 16 16 N 1.31519 * 120.00371 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99976 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47182 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.46952 * 299.99607 * 17 15 13 20 20 H 1.48498 * 109.47699 * 59.99452 * 17 15 13 21 21 C 1.38625 * 119.20607 * 0.27735 * 6 5 4 22 22 N 1.31966 * 120.75904 * 359.40333 * 21 6 5 23 23 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47006 * 299.99961 * 1 2 3 25 25 H 1.08998 * 109.46601 * 59.99993 * 1 2 3 26 26 H 1.08000 * 120.41163 * 0.02562 * 4 3 2 27 27 H 1.07997 * 120.77197 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99782 * 214.95868 * 7 6 5 29 29 H 1.08999 * 109.46830 * 180.02562 * 12 10 8 30 30 H 1.08993 * 109.47156 * 300.00017 * 12 10 8 31 31 H 1.09001 * 109.47173 * 60.00660 * 12 10 8 32 32 H 0.96994 * 120.00109 * 179.97438 * 16 15 13 33 33 H 1.08000 * 119.62097 * 179.72552 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5440 2.1152 0.0005 5 6 3.8439 3.4645 0.0000 6 6 2.7913 4.3790 -0.0005 7 7 3.0489 5.7570 -0.0016 8 6 4.1128 6.2432 -0.6710 9 8 4.8948 5.4827 -1.2015 10 6 4.3310 7.7316 -0.7605 11 1 3.4760 8.1952 -1.2526 12 6 4.4844 8.3101 0.6477 13 6 5.5804 8.0093 -1.5560 14 1 6.1589 7.1899 -1.9564 15 6 5.9850 9.3094 -1.7726 16 7 5.2803 10.3073 -1.2855 17 14 7.5333 9.6536 -2.7593 18 1 7.7477 11.1204 -2.8483 19 1 8.6983 9.0225 -2.0885 20 1 7.3848 9.0917 -4.1258 21 6 1.4871 3.9092 0.0054 22 7 1.2364 2.6136 -0.0004 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 4.3344 1.3793 0.0005 27 1 4.8696 3.8025 0.0008 28 1 2.4613 6.3606 0.4793 29 1 4.6417 9.3867 0.5830 30 1 3.5809 8.1092 1.2233 31 1 5.3394 7.8465 1.1397 32 1 5.5651 11.2219 -1.4376 33 1 0.6667 4.6117 0.0095 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597088497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:46 Heat of formation + Delta-G solvation = -8.383010 kcal Electronic energy + Delta-G solvation = -17293.763769 eV Core-core repulsion = 14445.501919 eV Total energy + Delta-G solvation = -2848.261850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.44651 -38.69449 -34.62097 -33.93405 -32.16474 -30.92928 -29.52971 -28.83548 -25.26541 -24.13805 -23.59338 -22.14929 -19.62145 -18.09027 -17.58527 -16.50224 -16.17134 -15.64297 -15.14733 -14.68092 -14.34137 -14.17797 -14.07135 -13.44433 -13.37342 -13.26134 -12.68973 -12.65429 -12.11251 -11.67587 -11.10407 -10.93250 -10.79321 -10.73118 -10.61111 -10.37003 -10.07818 -9.81411 -9.71349 -9.12215 -8.82286 -8.69102 -8.44201 -7.34904 -6.13093 -4.17485 1.02440 1.33552 1.44994 2.19911 3.30390 3.33449 3.34021 3.37565 3.52601 3.84570 4.39056 4.56826 4.99030 5.01031 5.07521 5.10852 5.16976 5.20865 5.62013 5.66703 5.91077 5.96827 6.22862 6.41930 6.47607 6.66993 6.76099 6.98392 7.31482 7.60850 7.72429 7.79955 7.95857 8.20496 8.86078 8.91862 9.48713 10.94430 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.003783 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.192262 B = 7400.308718 C = 7753.846236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.094 6.094 3 C 0.088 3.912 4 C -0.126 4.126 5 C -0.068 4.068 6 C 0.115 3.885 7 N -0.683 5.683 8 C 0.520 3.480 9 O -0.523 6.523 10 C 0.033 3.967 11 H 0.058 0.942 12 C -0.135 4.135 13 C -0.507 4.507 14 H 0.075 0.925 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.077 3.923 22 N -0.472 5.472 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.139 0.861 27 H 0.157 0.843 28 H 0.411 0.589 29 H 0.097 0.903 30 H 0.013 0.987 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 -13.739 5.280 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.143 5.857 3 C -0.162 4.162 4 C -0.152 4.152 5 C -0.098 4.098 6 C 0.014 3.986 7 N -0.329 5.329 8 C 0.311 3.689 9 O -0.396 6.396 10 C 0.012 3.988 11 H 0.075 0.925 12 C -0.193 4.193 13 C -0.545 4.545 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.730 3.270 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.086 4.086 22 N -0.184 5.184 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.157 0.843 27 H 0.174 0.826 28 H 0.247 0.753 29 H 0.115 0.885 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.699 -15.309 4.854 18.264 hybrid contribution 0.451 2.030 -0.298 2.101 sum -8.247 -13.279 4.556 16.282 Atomic orbital electron populations 1.23386 0.93901 1.05683 1.06579 1.85363 1.07671 0.99962 1.92688 1.22729 0.92161 0.97718 1.03560 1.21566 0.95484 0.96401 1.01752 1.21772 1.00932 0.91377 0.95689 1.18951 0.94258 0.85739 0.99625 1.44146 1.31272 1.04322 1.53187 1.22413 0.77911 0.93980 0.74592 1.90536 1.43683 1.60317 1.45108 1.18917 1.00102 0.83451 0.96336 0.92456 1.21786 0.97202 1.05594 0.94742 1.21065 1.08079 0.92770 1.32602 0.90714 1.24940 0.97371 0.95968 0.95788 1.69847 1.39082 0.99078 1.45426 0.86473 0.83068 0.76799 0.80634 1.21296 1.20108 1.20117 1.22461 0.94436 0.91761 0.99913 1.67875 1.34582 1.01899 1.14047 0.88252 0.89637 0.89612 0.84326 0.82554 0.75292 0.88493 0.96801 0.94743 0.92726 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 10.01 101.05 1.01 -0.13 16 2 S -0.09 -1.09 22.55 -107.50 -2.42 -3.51 16 3 C 0.09 1.25 7.00 -16.96 -0.12 1.13 16 4 C -0.13 -1.82 9.83 -39.24 -0.39 -2.21 16 5 C -0.07 -1.12 8.80 -39.14 -0.34 -1.47 16 6 C 0.11 1.83 6.32 -83.45 -0.53 1.30 16 7 N -0.68 -11.28 5.28 -9.72 -0.05 -11.33 16 8 C 0.52 11.08 7.01 -10.99 -0.08 11.00 16 9 O -0.52 -12.62 12.94 5.54 0.07 -12.55 16 10 C 0.03 0.77 2.65 -92.92 -0.25 0.53 16 11 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 12 C -0.14 -2.91 8.86 37.16 0.33 -2.58 16 13 C -0.51 -13.79 8.37 -34.44 -0.29 -14.07 16 14 H 0.07 2.14 6.75 -52.48 -0.35 1.78 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.90 -24.30 11.32 55.43 0.63 -23.67 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.08 1.09 11.11 -17.35 -0.19 0.89 16 22 N -0.47 -6.85 9.42 -11.98 -0.11 -6.97 16 23 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 24 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.16 2.80 6.32 -52.49 -0.33 2.47 16 28 H 0.41 5.54 8.12 -40.82 -0.33 5.21 16 29 H 0.10 2.32 6.07 -51.93 -0.32 2.01 16 30 H 0.01 0.23 7.47 -51.93 -0.39 -0.16 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 297.49 15.07 4.48 4.48 Total: -1.00 -29.89 297.49 -7.17 -37.06 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.81 Total: 4.33 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.93 Total: -4.06 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.46 Total: -41.97 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.42 Total: -3.51 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.89 -7.17 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597088497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.678 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds