Wall clock time and date at job start Mon Mar 30 2020 07:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 103.00223 * 2 1 4 4 C 1.39178 * 119.63770 * 179.97438 * 3 2 1 5 5 C 1.38220 * 119.16731 * 179.97438 * 4 3 2 6 6 C 1.39436 * 118.45295 * 0.02562 * 5 4 3 7 7 N 1.40189 * 120.39690 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00122 * 34.96487 * 7 6 5 9 9 O 1.21297 * 120.00158 * 355.33193 * 8 7 6 10 10 C 1.50702 * 120.00283 * 175.33482 * 8 7 6 11 11 H 1.08998 * 109.47128 * 299.99520 * 10 8 7 12 12 C 1.53001 * 109.46988 * 59.99758 * 10 8 7 13 13 C 1.50702 * 109.47243 * 179.97438 * 10 8 7 14 14 H 1.08004 * 119.99993 * 359.97438 * 13 10 8 15 15 C 1.37870 * 119.99928 * 179.97438 * 13 10 8 16 16 N 1.31519 * 120.00371 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99976 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47182 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.46952 * 299.99607 * 17 15 13 20 20 H 1.48498 * 109.47699 * 59.99452 * 17 15 13 21 21 C 1.38625 * 119.20607 * 0.27735 * 6 5 4 22 22 N 1.31966 * 120.75904 * 359.40333 * 21 6 5 23 23 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47006 * 299.99961 * 1 2 3 25 25 H 1.08998 * 109.46601 * 59.99993 * 1 2 3 26 26 H 1.08000 * 120.41163 * 0.02562 * 4 3 2 27 27 H 1.07997 * 120.77197 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99782 * 214.95868 * 7 6 5 29 29 H 1.08999 * 109.46830 * 180.02562 * 12 10 8 30 30 H 1.08993 * 109.47156 * 300.00017 * 12 10 8 31 31 H 1.09001 * 109.47173 * 60.00660 * 12 10 8 32 32 H 0.96994 * 120.00109 * 179.97438 * 16 15 13 33 33 H 1.08000 * 119.62097 * 179.72552 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5440 2.1152 0.0005 5 6 3.8439 3.4645 0.0000 6 6 2.7913 4.3790 -0.0005 7 7 3.0489 5.7570 -0.0016 8 6 4.1128 6.2432 -0.6710 9 8 4.8948 5.4827 -1.2015 10 6 4.3310 7.7316 -0.7605 11 1 3.4760 8.1952 -1.2526 12 6 4.4844 8.3101 0.6477 13 6 5.5804 8.0093 -1.5560 14 1 6.1589 7.1899 -1.9564 15 6 5.9850 9.3094 -1.7726 16 7 5.2803 10.3073 -1.2855 17 14 7.5333 9.6536 -2.7593 18 1 7.7477 11.1204 -2.8483 19 1 8.6983 9.0225 -2.0885 20 1 7.3848 9.0917 -4.1258 21 6 1.4871 3.9092 0.0054 22 7 1.2364 2.6136 -0.0004 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 4.3344 1.3793 0.0005 27 1 4.8696 3.8025 0.0008 28 1 2.4613 6.3606 0.4793 29 1 4.6417 9.3867 0.5830 30 1 3.5809 8.1092 1.2233 31 1 5.3394 7.8465 1.1397 32 1 5.5651 11.2219 -1.4376 33 1 0.6667 4.6117 0.0095 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597088497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:44 Heat of formation + Delta-G solvation = -27.128724 kcal Electronic energy + Delta-G solvation = -17294.576644 eV Core-core repulsion = 14445.501919 eV Total energy + Delta-G solvation = -2849.074725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76452 -40.15570 -36.09423 -35.83659 -33.38763 -32.67812 -30.83188 -29.64242 -27.23206 -25.56036 -24.81095 -23.67555 -21.21553 -19.23977 -18.95020 -18.23186 -17.74550 -17.14554 -16.54729 -16.19707 -15.67045 -15.41101 -15.29831 -14.91206 -14.58951 -14.40464 -14.17235 -13.77145 -13.49535 -13.09157 -12.97300 -12.76010 -12.62180 -12.28471 -12.03485 -12.02686 -11.51085 -11.12697 -11.04699 -10.86880 -10.57287 -10.30147 -9.94748 -8.38626 -8.17214 -6.27992 -0.15904 0.15543 0.48285 1.34457 1.42026 1.42397 1.50932 1.72831 2.10704 2.45015 2.64207 3.13010 3.50368 3.82638 3.91042 3.97034 4.33060 4.36821 4.40011 4.56511 4.72302 4.77393 4.90183 4.95631 4.97939 5.02184 5.19173 5.46485 5.65993 5.73667 5.90730 6.16290 6.52602 6.61007 6.80234 7.26534 7.41961 8.88098 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.003783 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.192262 B = 7400.308718 C = 7753.846236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.087 6.087 3 C 0.082 3.918 4 C -0.131 4.131 5 C -0.082 4.082 6 C 0.091 3.909 7 N -0.662 5.662 8 C 0.524 3.476 9 O -0.560 6.560 10 C 0.029 3.971 11 H 0.049 0.951 12 C -0.124 4.124 13 C -0.533 4.533 14 H 0.051 0.949 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.276 1.276 20 H -0.277 1.277 21 C 0.091 3.909 22 N -0.477 5.477 23 H 0.128 0.872 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.155 0.845 27 H 0.135 0.865 28 H 0.426 0.574 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.633 -14.793 5.772 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S 0.151 5.849 3 C -0.167 4.167 4 C -0.157 4.157 5 C -0.112 4.112 6 C -0.009 4.009 7 N -0.309 5.309 8 C 0.315 3.685 9 O -0.436 6.436 10 C 0.008 3.992 11 H 0.067 0.933 12 C -0.182 4.182 13 C -0.571 4.571 14 H 0.069 0.931 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.779 3.221 18 H -0.201 1.201 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.072 4.072 22 N -0.190 5.190 23 H 0.146 0.854 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.173 0.827 27 H 0.152 0.848 28 H 0.266 0.734 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.298 -16.380 5.378 20.082 hybrid contribution 0.836 2.209 -0.429 2.400 sum -9.463 -14.171 4.949 17.744 Atomic orbital electron populations 1.23511 0.91550 1.07545 1.06491 1.85394 1.10182 0.97391 1.91952 1.23195 0.92122 0.99359 1.02007 1.21727 0.96430 0.95929 1.01646 1.21706 1.00236 0.92634 0.96600 1.19049 0.95115 0.84888 1.01818 1.43647 1.29940 1.05184 1.52166 1.21896 0.78762 0.92925 0.74945 1.90523 1.45377 1.60729 1.47011 1.18822 0.98224 0.85300 0.96849 0.93280 1.21609 0.98924 1.03573 0.94067 1.21251 1.09629 0.92465 1.33743 0.93083 1.25546 0.99766 0.95799 0.96582 1.69924 1.39935 0.99218 1.45749 0.85679 0.80100 0.77091 0.79186 1.20052 1.20126 1.20280 1.22883 0.94295 0.92222 0.97760 1.68012 1.34483 1.01981 1.14481 0.85412 0.89480 0.89867 0.82712 0.84764 0.73434 0.90853 0.92537 0.95611 0.92506 0.79271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 10.01 113.37 1.14 -0.71 16 2 S -0.09 -1.81 22.55 -56.49 -1.27 -3.08 16 3 C 0.08 2.20 7.00 84.83 0.59 2.79 16 4 C -0.13 -3.71 9.83 22.49 0.22 -3.49 16 5 C -0.08 -2.72 8.80 22.55 0.20 -2.52 16 6 C 0.09 2.82 6.32 38.19 0.24 3.07 16 7 N -0.66 -21.31 5.28 -303.05 -1.60 -22.91 16 8 C 0.52 22.58 7.01 87.66 0.61 23.19 16 9 O -0.56 -27.90 12.94 -3.08 -0.04 -27.94 16 10 C 0.03 1.39 2.65 -12.28 -0.03 1.35 16 11 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.12 -5.27 8.86 71.98 0.64 -4.63 16 13 C -0.53 -29.67 8.37 25.60 0.21 -29.46 16 14 H 0.05 3.03 6.75 -2.91 -0.02 3.02 16 15 C 0.02 1.23 5.30 84.65 0.45 1.68 16 16 N -0.91 -49.50 11.32 21.45 0.24 -49.26 16 17 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 C 0.09 2.36 11.11 84.77 0.94 3.30 16 22 N -0.48 -12.78 9.42 -191.80 -1.81 -14.59 16 23 H 0.13 1.21 8.14 -2.39 -0.02 1.20 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 27 H 0.13 5.03 6.32 -2.91 -0.02 5.01 16 28 H 0.43 10.67 8.12 -92.71 -0.75 9.91 16 29 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 30 H 0.06 1.87 7.47 -2.39 -0.02 1.85 16 31 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.19 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -64.91 297.49 3.15 -61.77 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.38 Total: 15.53 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 5.21 Total: -5.42 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -3.16 Total: -86.75 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.04 Total: -27.94 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -1.27 Total: -3.08 kcal Total: -64.91 3.15 -61.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597088497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.637 kcal (2) G-P(sol) polarization free energy of solvation -64.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds