Wall clock time and date at job start Mon Mar 30 2020 07:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76201 * 102.99628 * 2 1 4 4 C 1.39462 * 120.42037 * 179.97438 * 3 2 1 5 5 C 1.38284 * 118.42860 * 179.75513 * 4 3 2 6 6 C 1.39032 * 119.17984 * 0.53166 * 5 4 3 7 7 N 1.39633 * 119.60636 * 179.72886 * 6 5 4 8 8 C 1.34777 * 120.00323 * 185.08498 * 7 6 5 9 9 O 1.21287 * 119.99372 * 354.91005 * 8 7 6 10 10 C 1.50698 * 120.00327 * 174.90947 * 8 7 6 11 11 H 1.08999 * 109.47303 * 60.00128 * 10 8 7 12 12 C 1.53003 * 109.46815 * 299.99715 * 10 8 7 13 13 C 1.50701 * 109.46776 * 180.02562 * 10 8 7 14 14 H 1.07998 * 120.00703 * 359.97438 * 13 10 8 15 15 C 1.37882 * 119.99715 * 180.02562 * 13 10 8 16 16 N 1.31517 * 119.99856 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00158 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.46764 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47264 * 119.99323 * 17 15 13 20 20 H 1.48493 * 109.47145 * 239.99703 * 17 15 13 21 21 N 1.32295 * 120.78531 * 359.45597 * 6 5 4 22 22 C 1.31915 * 121.71319 * 0.27564 * 21 6 5 23 23 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46921 * 299.99245 * 1 2 3 25 25 H 1.08995 * 109.47477 * 59.99653 * 1 2 3 26 26 H 1.08001 * 120.78848 * 0.02562 * 4 3 2 27 27 H 1.07996 * 120.41004 * 180.28006 * 5 4 3 28 28 H 0.97000 * 120.00290 * 5.09552 * 7 6 5 29 29 H 1.09003 * 109.46711 * 179.97438 * 12 10 8 30 30 H 1.09004 * 109.46996 * 60.00360 * 12 10 8 31 31 H 1.08999 * 109.47523 * 300.00279 * 12 10 8 32 32 H 0.97001 * 119.99858 * 180.02562 * 16 15 13 33 33 H 1.08002 * 119.63246 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5409 2.1345 0.0005 5 6 3.8049 3.4919 -0.0047 6 6 2.7428 4.3890 0.0010 7 7 2.9991 5.7616 0.0016 8 6 1.9805 6.6374 0.1105 9 8 0.8353 6.2380 0.1151 10 6 2.2645 8.1129 0.2266 11 1 2.8074 8.4490 -0.6567 12 6 3.1103 8.3727 1.4748 13 6 0.9645 8.8675 0.3353 14 1 0.0266 8.3323 0.3213 15 6 0.9726 10.2413 0.4517 16 7 2.1148 10.8931 0.4683 17 14 -0.6387 11.1769 0.5857 18 1 -1.7724 10.2187 0.5422 19 1 -0.6714 11.9252 1.8680 20 1 -0.7532 12.1303 -0.5469 21 7 1.4921 3.9577 0.0005 22 6 1.2024 2.6707 0.0000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 4.3462 1.4148 0.0005 27 1 4.8235 3.8507 -0.0090 28 1 3.9103 6.0849 -0.0766 29 1 3.3161 9.4398 1.5585 30 1 4.0506 7.8268 1.3966 31 1 2.5674 8.0365 2.3582 32 1 2.1205 11.8596 0.5505 33 1 0.1693 2.3559 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597252055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:15 Heat of formation + Delta-G solvation = 7.709848 kcal Electronic energy + Delta-G solvation = -17365.348407 eV Core-core repulsion = 14517.784395 eV Total energy + Delta-G solvation = -2847.564012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41048 -38.43834 -34.39347 -33.80218 -32.39365 -30.95759 -29.93525 -28.78731 -25.19302 -24.12116 -23.58439 -22.03274 -19.54089 -17.98107 -17.55334 -16.43248 -16.07028 -15.41677 -14.91974 -14.83403 -14.52050 -14.41427 -13.98647 -13.50606 -13.39520 -12.95971 -12.83551 -12.53236 -12.06773 -11.67732 -11.06017 -10.93227 -10.83461 -10.72862 -10.66894 -10.28383 -10.00654 -9.86805 -9.42964 -9.02694 -8.78130 -8.51501 -8.27625 -7.24874 -6.07763 -4.11058 1.07103 1.33448 1.39994 2.25887 3.30724 3.36870 3.39422 3.48484 3.49921 4.07816 4.42704 4.54742 4.79030 4.85187 4.87037 5.00900 5.10609 5.26127 5.44566 5.62192 5.71965 5.92434 6.09269 6.32723 6.54028 6.74626 6.82886 7.02446 7.37776 7.59092 7.76129 7.98072 8.16986 8.41905 8.98370 9.10191 9.54937 10.99999 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038314 B = 0.004057 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.621816 B = 6899.808128 C = 7534.532540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.120 6.120 3 C -0.191 4.191 4 C -0.026 4.026 5 C -0.202 4.202 6 C 0.374 3.626 7 N -0.669 5.669 8 C 0.505 3.495 9 O -0.474 6.474 10 C 0.032 3.968 11 H 0.055 0.945 12 C -0.134 4.134 13 C -0.502 4.502 14 H 0.076 0.924 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.901 3.099 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.460 5.460 22 C 0.131 3.869 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.414 0.586 29 H 0.096 0.904 30 H 0.012 0.988 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -18.052 -0.796 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.118 5.882 3 C -0.307 4.307 4 C -0.057 4.057 5 C -0.227 4.227 6 C 0.139 3.861 7 N -0.316 5.316 8 C 0.294 3.706 9 O -0.341 6.341 10 C 0.011 3.989 11 H 0.073 0.927 12 C -0.192 4.192 13 C -0.540 4.540 14 H 0.094 0.906 15 C -0.142 4.142 16 N -0.536 5.536 17 Si 0.728 3.272 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.175 5.175 22 C -0.034 4.034 23 H 0.126 0.874 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.156 0.844 27 H 0.158 0.842 28 H 0.251 0.749 29 H 0.114 0.886 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.398 -18.380 -0.759 18.707 hybrid contribution -0.384 1.214 0.050 1.274 sum 3.014 -17.166 -0.709 17.443 Atomic orbital electron populations 1.23655 0.94631 1.07043 1.05991 1.85171 1.06638 1.02747 1.93624 1.22518 0.97760 0.97664 1.12713 1.20856 0.94556 0.95095 0.95145 1.21434 0.99416 0.92858 1.09036 1.18842 0.89271 0.85924 0.92015 1.44486 1.12595 1.02285 1.72225 1.22437 0.84255 0.89907 0.74021 1.90646 1.20752 1.79440 1.43278 1.18935 0.98909 0.84024 0.97035 0.92689 1.21771 0.95421 1.04652 0.97350 1.21168 0.92036 0.91186 1.49639 0.90615 1.24944 0.96725 0.97519 0.94989 1.69873 1.24751 1.08029 1.50907 0.86375 0.83702 0.79572 0.77508 1.19506 1.21003 1.21000 1.67763 1.19563 1.15732 1.14406 1.22771 0.98555 0.87183 0.94905 0.87441 0.89591 0.89596 0.84383 0.84201 0.74948 0.88582 0.96872 0.94862 0.92933 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.16 101.05 0.93 -0.21 16 2 S -0.12 -1.25 22.58 -107.50 -2.43 -3.68 16 3 C -0.19 -2.49 6.13 -38.93 -0.24 -2.72 16 4 C -0.03 -0.31 9.93 -39.11 -0.39 -0.70 16 5 C -0.20 -2.62 9.93 -39.27 -0.39 -3.01 16 6 C 0.37 6.45 7.42 -154.53 -1.15 5.31 16 7 N -0.67 -12.00 5.25 -11.38 -0.06 -12.06 16 8 C 0.51 11.61 7.11 -10.99 -0.08 11.53 16 9 O -0.47 -12.57 13.72 5.55 0.08 -12.49 16 10 C 0.03 0.79 2.64 -92.92 -0.25 0.54 16 11 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 12 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 13 C -0.50 -14.12 8.37 -34.44 -0.29 -14.41 16 14 H 0.08 2.27 6.75 -52.49 -0.35 1.91 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.90 -24.83 11.32 55.43 0.63 -24.20 16 17 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 N -0.46 -8.86 7.88 -12.15 -0.10 -8.95 16 22 C 0.13 2.00 10.53 -17.32 -0.18 1.82 16 23 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.09 0.66 7.76 -51.92 -0.40 0.26 16 25 H 0.09 0.65 7.76 -51.93 -0.40 0.25 16 26 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.41 5.86 8.28 -40.82 -0.34 5.52 16 29 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 30 H 0.01 0.23 7.69 -51.93 -0.40 -0.17 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.15 2.01 5.89 -52.49 -0.31 1.70 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -32.74 296.08 -8.01 -40.75 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -3.77 Total: 2.47 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.80 Total: -3.00 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.47 Total: -45.21 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.43 Total: -3.68 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.74 -8.01 -40.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597252055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.460 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds