Wall clock time and date at job start Mon Mar 30 2020 07:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76201 * 102.99628 * 2 1 4 4 C 1.39462 * 120.42037 * 179.97438 * 3 2 1 5 5 C 1.38284 * 118.42860 * 179.75513 * 4 3 2 6 6 C 1.39032 * 119.17984 * 0.53166 * 5 4 3 7 7 N 1.39633 * 119.60636 * 179.72886 * 6 5 4 8 8 C 1.34777 * 120.00323 * 185.08498 * 7 6 5 9 9 O 1.21287 * 119.99372 * 354.91005 * 8 7 6 10 10 C 1.50698 * 120.00327 * 174.90947 * 8 7 6 11 11 H 1.08999 * 109.47303 * 60.00128 * 10 8 7 12 12 C 1.53003 * 109.46815 * 299.99715 * 10 8 7 13 13 C 1.50701 * 109.46776 * 180.02562 * 10 8 7 14 14 H 1.07998 * 120.00703 * 359.97438 * 13 10 8 15 15 C 1.37882 * 119.99715 * 180.02562 * 13 10 8 16 16 N 1.31517 * 119.99856 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00158 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.46764 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47264 * 119.99323 * 17 15 13 20 20 H 1.48493 * 109.47145 * 239.99703 * 17 15 13 21 21 N 1.32295 * 120.78531 * 359.45597 * 6 5 4 22 22 C 1.31915 * 121.71319 * 0.27564 * 21 6 5 23 23 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46921 * 299.99245 * 1 2 3 25 25 H 1.08995 * 109.47477 * 59.99653 * 1 2 3 26 26 H 1.08001 * 120.78848 * 0.02562 * 4 3 2 27 27 H 1.07996 * 120.41004 * 180.28006 * 5 4 3 28 28 H 0.97000 * 120.00290 * 5.09552 * 7 6 5 29 29 H 1.09003 * 109.46711 * 179.97438 * 12 10 8 30 30 H 1.09004 * 109.46996 * 60.00360 * 12 10 8 31 31 H 1.08999 * 109.47523 * 300.00279 * 12 10 8 32 32 H 0.97001 * 119.99858 * 180.02562 * 16 15 13 33 33 H 1.08002 * 119.63246 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5409 2.1345 0.0005 5 6 3.8049 3.4919 -0.0047 6 6 2.7428 4.3890 0.0010 7 7 2.9991 5.7616 0.0016 8 6 1.9805 6.6374 0.1105 9 8 0.8353 6.2380 0.1151 10 6 2.2645 8.1129 0.2266 11 1 2.8074 8.4490 -0.6567 12 6 3.1103 8.3727 1.4748 13 6 0.9645 8.8675 0.3353 14 1 0.0266 8.3323 0.3213 15 6 0.9726 10.2413 0.4517 16 7 2.1148 10.8931 0.4683 17 14 -0.6387 11.1769 0.5857 18 1 -1.7724 10.2187 0.5422 19 1 -0.6714 11.9252 1.8680 20 1 -0.7532 12.1303 -0.5469 21 7 1.4921 3.9577 0.0005 22 6 1.2024 2.6707 0.0000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 4.3462 1.4148 0.0005 27 1 4.8235 3.8507 -0.0090 28 1 3.9103 6.0849 -0.0766 29 1 3.3161 9.4398 1.5585 30 1 4.0506 7.8268 1.3966 31 1 2.5674 8.0365 2.3582 32 1 2.1205 11.8596 0.5505 33 1 0.1693 2.3559 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597252055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:14 Heat of formation + Delta-G solvation = -13.133952 kcal Electronic energy + Delta-G solvation = -17366.252262 eV Core-core repulsion = 14517.784395 eV Total energy + Delta-G solvation = -2848.467867 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.70839 -39.98597 -35.91355 -35.76710 -33.50795 -32.72015 -31.20393 -29.62275 -27.23010 -25.57064 -24.73419 -23.58052 -21.15492 -19.29832 -18.54404 -18.21251 -17.81917 -16.90824 -16.30991 -16.28508 -15.89558 -15.53407 -15.16399 -14.89775 -14.52786 -14.26891 -14.23432 -13.70213 -13.53870 -12.98936 -12.95863 -12.72216 -12.59722 -12.31378 -12.05226 -12.02060 -11.70186 -11.07767 -11.03536 -10.85519 -10.51453 -9.92830 -9.87131 -8.22392 -8.17646 -6.27685 -0.07315 0.28918 0.55831 1.38314 1.40467 1.42497 1.53798 1.86697 2.05961 2.44400 2.82056 3.12463 3.41127 3.82096 3.95076 4.01272 4.24825 4.29239 4.33494 4.63275 4.71399 4.77034 4.86695 4.91208 4.93056 4.99503 5.23325 5.46400 5.69915 5.75174 5.91255 6.14904 6.38379 6.79410 7.08921 7.37458 7.51836 8.88420 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038314 B = 0.004057 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.621816 B = 6899.808128 C = 7534.532540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.107 6.107 3 C -0.182 4.182 4 C -0.027 4.027 5 C -0.178 4.178 6 C 0.334 3.666 7 N -0.656 5.656 8 C 0.510 3.490 9 O -0.522 6.522 10 C 0.029 3.971 11 H 0.049 0.951 12 C -0.120 4.120 13 C -0.530 4.530 14 H 0.046 0.954 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.282 1.282 19 H -0.273 1.273 20 H -0.273 1.273 21 N -0.512 5.512 22 C 0.105 3.895 23 H 0.132 0.868 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.175 0.825 27 H 0.179 0.821 28 H 0.431 0.569 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -19.869 -0.722 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.132 5.868 3 C -0.298 4.298 4 C -0.058 4.058 5 C -0.202 4.202 6 C 0.101 3.899 7 N -0.304 5.304 8 C 0.299 3.701 9 O -0.394 6.394 10 C 0.007 3.993 11 H 0.066 0.934 12 C -0.178 4.178 13 C -0.568 4.568 14 H 0.065 0.935 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.207 1.207 19 H -0.198 1.198 20 H -0.198 1.198 21 N -0.227 5.227 22 C -0.058 4.058 23 H 0.151 0.849 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.193 0.807 27 H 0.197 0.803 28 H 0.271 0.729 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.925 -20.250 -0.689 20.852 hybrid contribution -0.833 1.559 0.004 1.767 sum 4.092 -18.691 -0.685 19.146 Atomic orbital electron populations 1.23797 0.92711 1.08721 1.06181 1.85148 1.08809 0.99913 1.92892 1.22847 0.97961 0.99096 1.09862 1.21362 0.95058 0.95407 0.93980 1.21773 0.99918 0.92511 1.06011 1.19082 0.90125 0.85620 0.95100 1.43929 1.12134 1.02597 1.71767 1.21996 0.84500 0.89943 0.73712 1.90617 1.22725 1.80132 1.45919 1.18850 0.97561 0.85292 0.97565 0.93356 1.21580 0.96868 1.03697 0.95702 1.21285 0.92616 0.92079 1.50868 0.93538 1.25554 0.99611 0.97995 0.94555 1.69939 1.25824 1.08407 1.50644 0.85553 0.79978 0.78243 0.78171 1.20701 1.19827 1.19844 1.67539 1.21570 1.17981 1.15609 1.22933 0.99778 0.86604 0.96514 0.84940 0.89503 0.89418 0.80742 0.80349 0.72925 0.90743 0.92484 0.96110 0.92491 0.82210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.16 113.37 1.04 -0.93 16 2 S -0.11 -1.94 22.58 -56.49 -1.28 -3.22 16 3 C -0.18 -4.38 6.13 22.69 0.14 -4.24 16 4 C -0.03 -0.57 9.93 22.58 0.22 -0.34 16 5 C -0.18 -4.10 9.93 22.47 0.22 -3.88 16 6 C 0.33 11.32 7.42 132.85 0.99 12.31 16 7 N -0.66 -23.30 5.25 -308.30 -1.62 -24.91 16 8 C 0.51 24.12 7.11 87.66 0.62 24.74 16 9 O -0.52 -29.11 13.72 -3.05 -0.04 -29.15 16 10 C 0.03 1.44 2.64 -12.29 -0.03 1.40 16 11 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 12 C -0.12 -5.41 8.87 71.98 0.64 -4.77 16 13 C -0.53 -30.91 8.37 25.60 0.21 -30.70 16 14 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 15 C 0.02 1.25 5.30 84.66 0.45 1.69 16 16 N -0.91 -50.59 11.32 21.45 0.24 -50.35 16 17 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 18 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 N -0.51 -20.09 7.88 -192.36 -1.52 -21.61 16 22 C 0.11 3.22 10.53 84.81 0.89 4.11 16 23 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.09 1.21 7.76 -2.39 -0.02 1.19 16 25 H 0.09 1.20 7.76 -2.39 -0.02 1.18 16 26 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 27 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 28 H 0.43 11.53 8.28 -92.71 -0.77 10.77 16 29 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 30 H 0.06 2.00 7.69 -2.39 -0.02 1.98 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.16 4.30 5.89 -2.91 -0.02 4.28 16 Total: -1.00 -74.00 296.08 3.58 -70.41 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.37 Total: 12.21 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 5.40 Total: -0.60 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -2.89 Total: -96.87 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.04 Total: -29.15 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -1.28 Total: -3.22 kcal Total: -74.00 3.58 -70.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597252055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.280 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds