Wall clock time and date at job start Mon Mar 30 2020 07:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50698 * 109.47177 * 240.00279 * 2 1 3 5 5 H 1.08001 * 120.00262 * 240.00171 * 4 2 1 6 6 C 1.37878 * 120.00084 * 59.99379 * 4 2 1 7 7 N 1.31513 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47258 * 60.00121 * 8 6 4 10 10 H 1.48501 * 109.47447 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47259 * 300.00100 * 8 6 4 12 12 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 13 13 O 1.21305 * 120.00441 * 120.00006 * 12 2 1 14 14 N 1.34784 * 119.99988 * 300.00132 * 12 2 1 15 15 C 1.39791 * 119.99938 * 179.72520 * 14 12 2 16 16 S 1.76201 * 126.06990 * 359.68986 * 15 14 12 17 17 C 1.70952 * 90.32669 * 179.97438 * 16 15 14 18 18 N 1.28922 * 110.31502 * 0.34711 * 17 16 15 19 19 C 1.31864 * 117.19342 * 359.72758 * 18 17 16 20 20 C 1.50701 * 122.85205 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49695 * 8.63637 * 20 19 18 22 22 C 1.52994 * 60.00079 * 252.51567 * 21 20 19 23 23 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 24 24 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 26 26 H 0.97003 * 119.99629 * 180.02562 * 7 6 4 27 27 H 0.97000 * 119.99339 * 0.02562 * 14 12 2 28 28 H 1.08001 * 124.84659 * 180.02562 * 17 16 15 29 29 H 1.08999 * 115.55272 * 154.34695 * 20 19 18 30 30 H 1.08998 * 117.49623 * 0.02562 * 21 20 19 31 31 H 1.08997 * 117.49614 * 145.02249 * 21 20 19 32 32 H 1.09005 * 117.49704 * 252.51222 * 22 21 20 33 33 H 1.08997 * 117.52213 * 107.48147 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8268 -0.4199 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6966 1.1191 14 7 1.7068 -0.2499 2.4546 15 6 2.1680 -0.9123 3.5959 16 16 3.1727 -2.3596 3.6206 17 6 3.1668 -2.3464 5.3301 18 7 2.4699 -1.3539 5.7676 19 6 1.9183 -0.5622 4.8689 20 6 1.0785 0.6334 5.2381 21 6 1.0371 1.0394 6.7127 22 6 -0.1835 0.3818 6.0657 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7087 1.1613 -3.4844 27 1 1.1488 0.5385 2.5435 28 1 3.6703 -3.0695 5.9545 29 1 1.0427 1.4302 4.4952 30 1 1.6175 0.4419 7.4156 31 1 0.9741 2.1035 6.9401 32 1 -1.0495 1.0134 5.8675 33 1 -0.4066 -0.6485 6.3427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597456238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:07 Heat of formation + Delta-G solvation = 27.226259 kcal Electronic energy + Delta-G solvation = -17638.425519 eV Core-core repulsion = 14791.707802 eV Total energy + Delta-G solvation = -2846.717716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.14831 -39.04797 -36.35536 -34.50686 -33.99030 -30.82482 -28.80230 -25.31609 -25.06183 -22.94477 -22.82522 -22.29101 -20.11528 -19.25022 -17.51034 -17.15221 -16.38548 -15.56680 -15.31629 -14.88631 -14.65975 -14.28154 -13.92187 -13.69830 -13.23041 -12.72165 -12.20961 -11.80808 -11.47944 -11.23514 -11.15719 -10.98780 -10.85820 -10.82061 -10.63426 -10.40940 -10.30677 -10.13352 -9.43329 -9.16917 -8.90937 -8.68584 -8.49468 -7.70005 -6.16469 -4.21270 1.02497 1.42555 2.14890 2.80371 3.29169 3.32389 3.34938 3.39162 3.49633 4.02423 4.36797 4.44112 4.76971 4.90995 5.09629 5.17290 5.37131 5.55883 5.66228 5.81026 5.84019 6.07282 6.19826 6.25707 6.43129 6.60454 6.64355 6.72330 7.24331 7.51365 7.67567 7.90100 7.99566 8.11738 8.66813 8.87087 9.45003 10.91066 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.005185 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.235514 B = 5399.127997 C = 6201.318554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.038 3.962 3 H 0.060 0.940 4 C -0.508 4.508 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.511 3.489 13 O -0.506 6.506 14 N -0.639 5.639 15 C 0.032 3.968 16 S 0.233 5.767 17 C -0.067 4.067 18 N -0.444 5.444 19 C 0.011 3.989 20 C -0.081 4.081 21 C -0.160 4.160 22 C -0.167 4.167 23 H 0.098 0.902 24 H 0.034 0.966 25 H 0.013 0.987 26 H 0.264 0.736 27 H 0.416 0.584 28 H 0.191 0.809 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -0.462 14.074 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 H 0.077 0.923 4 C -0.547 4.547 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.301 3.699 13 O -0.380 6.380 14 N -0.285 5.285 15 C -0.188 4.188 16 S 0.482 5.518 17 C -0.365 4.365 18 N -0.157 5.157 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.197 4.197 22 C -0.205 4.205 23 H 0.117 0.883 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.254 0.746 28 H 0.208 0.792 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.387 -1.645 13.571 13.676 hybrid contribution -0.479 0.714 -0.495 0.992 sum -0.092 -0.931 13.076 13.110 Atomic orbital electron populations 1.21803 0.95960 1.00256 1.01374 1.18901 0.94457 0.96959 0.87997 0.92258 1.21037 1.31754 1.13156 0.88720 0.90617 1.24938 0.94873 0.94979 0.99199 1.69845 1.36601 1.22850 1.23988 0.86452 0.79333 0.79710 0.81366 1.20077 1.21261 1.20075 1.22733 0.78422 0.84615 0.84117 1.90498 1.36683 1.26151 1.84681 1.43703 1.51376 1.30425 1.02960 1.23605 1.04093 1.00335 0.90817 1.85013 1.45079 1.20283 1.01455 1.28304 1.05979 1.02065 1.00150 1.65940 1.08891 1.03843 1.37048 1.18953 1.06702 1.00799 0.85942 1.20247 0.98926 0.95540 0.95430 1.22889 1.01387 1.00720 0.94725 1.22962 0.91574 1.02192 1.03736 0.88305 0.94646 0.96759 0.92656 0.74595 0.79200 0.86975 0.87799 0.88893 0.88581 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.87 37.16 0.33 -2.61 16 2 C 0.04 0.89 2.64 -92.93 -0.25 0.64 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.51 -13.67 8.37 -34.44 -0.29 -13.96 16 5 H 0.08 2.14 6.75 -52.49 -0.35 1.78 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -24.02 11.32 55.43 0.63 -23.40 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.51 10.96 7.11 -10.98 -0.08 10.89 16 13 O -0.51 -12.03 13.09 5.54 0.07 -11.96 16 14 N -0.64 -11.18 5.31 -10.60 -0.06 -11.24 16 15 C 0.03 0.54 7.18 -15.28 -0.11 0.43 16 16 S 0.23 3.73 20.47 -107.50 -2.20 1.53 16 17 C -0.07 -0.93 12.21 51.54 0.63 -0.30 16 18 N -0.44 -6.85 9.83 -11.75 -0.12 -6.96 16 19 C 0.01 0.18 6.39 -83.95 -0.54 -0.36 16 20 C -0.08 -1.04 5.82 -91.77 -0.53 -1.58 16 21 C -0.16 -1.80 10.09 -26.73 -0.27 -2.07 16 22 C -0.17 -1.89 10.23 -26.73 -0.27 -2.16 16 23 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 24 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.42 6.17 7.13 -40.82 -0.29 5.87 16 28 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.11 1.30 7.40 -51.93 -0.38 0.92 16 30 H 0.10 1.27 7.73 -51.93 -0.40 0.87 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -29.41 294.82 -7.53 -36.94 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.81 Total: 4.15 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.47 Total: -9.53 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.46 Total: -41.60 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.20 Total: 1.53 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.41 -7.53 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597456238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.168 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds