Wall clock time and date at job start Mon Mar 30 2020 07:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50698 * 109.47177 * 240.00279 * 2 1 3 5 5 H 1.08001 * 120.00262 * 240.00171 * 4 2 1 6 6 C 1.37878 * 120.00084 * 59.99379 * 4 2 1 7 7 N 1.31513 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47258 * 60.00121 * 8 6 4 10 10 H 1.48501 * 109.47447 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47259 * 300.00100 * 8 6 4 12 12 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 13 13 O 1.21305 * 120.00441 * 120.00006 * 12 2 1 14 14 N 1.34784 * 119.99988 * 300.00132 * 12 2 1 15 15 C 1.39791 * 119.99938 * 179.72520 * 14 12 2 16 16 S 1.76201 * 126.06990 * 359.68986 * 15 14 12 17 17 C 1.70952 * 90.32669 * 179.97438 * 16 15 14 18 18 N 1.28922 * 110.31502 * 0.34711 * 17 16 15 19 19 C 1.31864 * 117.19342 * 359.72758 * 18 17 16 20 20 C 1.50701 * 122.85205 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49695 * 8.63637 * 20 19 18 22 22 C 1.52994 * 60.00079 * 252.51567 * 21 20 19 23 23 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 24 24 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 26 26 H 0.97003 * 119.99629 * 180.02562 * 7 6 4 27 27 H 0.97000 * 119.99339 * 0.02562 * 14 12 2 28 28 H 1.08001 * 124.84659 * 180.02562 * 17 16 15 29 29 H 1.08999 * 115.55272 * 154.34695 * 20 19 18 30 30 H 1.08998 * 117.49623 * 0.02562 * 21 20 19 31 31 H 1.08997 * 117.49614 * 145.02249 * 21 20 19 32 32 H 1.09005 * 117.49704 * 252.51222 * 22 21 20 33 33 H 1.08997 * 117.52213 * 107.48147 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8268 -0.4199 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6966 1.1191 14 7 1.7068 -0.2499 2.4546 15 6 2.1680 -0.9123 3.5959 16 16 3.1727 -2.3596 3.6206 17 6 3.1668 -2.3464 5.3301 18 7 2.4699 -1.3539 5.7676 19 6 1.9183 -0.5622 4.8689 20 6 1.0785 0.6334 5.2381 21 6 1.0371 1.0394 6.7127 22 6 -0.1835 0.3818 6.0657 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7087 1.1613 -3.4844 27 1 1.1488 0.5385 2.5435 28 1 3.6703 -3.0695 5.9545 29 1 1.0427 1.4302 4.4952 30 1 1.6175 0.4419 7.4156 31 1 0.9741 2.1035 6.9401 32 1 -1.0495 1.0134 5.8675 33 1 -0.4066 -0.6485 6.3427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597456238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:06 Heat of formation + Delta-G solvation = 9.158729 kcal Electronic energy + Delta-G solvation = -17639.208986 eV Core-core repulsion = 14791.707802 eV Total energy + Delta-G solvation = -2847.501183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48092 -40.50569 -37.32858 -35.99816 -35.89107 -32.69100 -30.11526 -27.25845 -26.35212 -24.55377 -23.95058 -23.16173 -21.71330 -20.52580 -18.79894 -18.56664 -18.20495 -17.13196 -16.74639 -16.50357 -15.98525 -15.48057 -15.24229 -15.02796 -14.73286 -14.52075 -13.62314 -13.26412 -13.02227 -12.78923 -12.66112 -12.39806 -12.35209 -12.32102 -12.17494 -12.06148 -11.63744 -11.25750 -11.11966 -10.91215 -10.53553 -10.32240 -9.93237 -8.97237 -8.18463 -6.29281 -0.22400 0.20610 0.94250 1.42880 1.43143 1.49151 1.51655 1.92227 2.03604 2.44599 3.06074 3.12434 3.37641 3.75198 3.97916 4.13748 4.19152 4.35434 4.50108 4.67503 4.82891 4.85255 4.92237 4.93550 4.99382 5.19993 5.34289 5.36397 5.41489 5.69832 5.84075 6.09233 6.34865 6.77856 6.78456 7.07501 7.39590 8.87281 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.005185 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.235514 B = 5399.127997 C = 6201.318554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.035 3.965 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.514 3.486 13 O -0.539 6.539 14 N -0.624 5.624 15 C -0.008 4.008 16 S 0.196 5.804 17 C -0.033 4.033 18 N -0.462 5.462 19 C 0.029 3.971 20 C -0.107 4.107 21 C -0.148 4.148 22 C -0.157 4.157 23 H 0.076 0.924 24 H 0.025 0.975 25 H 0.052 0.948 26 H 0.266 0.734 27 H 0.427 0.573 28 H 0.231 0.769 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 -0.065 15.688 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.014 3.986 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.304 3.696 13 O -0.415 6.415 14 N -0.270 5.270 15 C -0.226 4.226 16 S 0.446 5.554 17 C -0.331 4.331 18 N -0.175 5.175 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.186 4.186 22 C -0.194 4.194 23 H 0.095 0.905 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.268 0.732 28 H 0.247 0.753 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.072 -1.225 15.218 15.267 hybrid contribution -0.316 0.569 -0.804 1.035 sum -0.387 -0.655 14.413 14.434 Atomic orbital electron populations 1.21621 0.94614 0.99801 1.02148 1.18788 0.95524 0.96168 0.88160 0.93137 1.21208 1.32094 1.13030 0.90701 0.92799 1.25550 0.95048 0.95653 1.01361 1.69923 1.36867 1.23387 1.24561 0.85649 0.78679 0.78734 0.78820 1.20138 1.20103 1.20161 1.22186 0.78344 0.84199 0.84878 1.90485 1.38146 1.27404 1.85510 1.43163 1.51202 1.30589 1.02083 1.23669 1.06537 1.01483 0.90921 1.85143 1.45655 1.20894 1.03705 1.28951 1.03757 1.01400 0.98972 1.66075 1.10010 1.04630 1.36821 1.19414 1.05136 1.00735 0.85350 1.20481 1.00042 0.95231 0.96972 1.22944 1.00742 1.01936 0.92954 1.23013 0.91884 1.02107 1.02428 0.90523 0.95589 0.92864 0.92458 0.73225 0.75301 0.85738 0.88867 0.86577 0.86334 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.87 71.98 0.64 -4.69 16 2 C 0.03 1.65 2.64 -12.29 -0.03 1.62 16 3 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.53 -29.29 8.37 25.60 0.21 -29.07 16 5 H 0.05 3.15 6.75 -2.91 -0.02 3.13 16 6 C 0.02 1.27 5.30 84.66 0.45 1.72 16 7 N -0.91 -49.02 11.32 21.45 0.24 -48.78 16 8 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.51 22.38 7.11 87.65 0.62 23.00 16 13 O -0.54 -26.32 13.09 -3.11 -0.04 -26.36 16 14 N -0.62 -21.56 5.31 -305.83 -1.62 -23.18 16 15 C -0.01 -0.26 7.18 82.54 0.59 0.33 16 16 S 0.20 6.21 20.47 -56.49 -1.16 5.05 16 17 C -0.03 -0.83 12.21 130.67 1.60 0.77 16 18 N -0.46 -13.26 9.83 -191.08 -1.88 -15.14 16 19 C 0.03 0.85 6.39 41.67 0.27 1.12 16 20 C -0.11 -2.50 5.82 -11.54 -0.07 -2.57 16 21 C -0.15 -2.91 10.09 30.59 0.31 -2.60 16 22 C -0.16 -3.10 10.23 30.59 0.31 -2.79 16 23 H 0.08 3.67 6.07 -2.39 -0.01 3.65 16 24 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 26 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 27 H 0.43 12.18 7.13 -92.71 -0.66 11.52 16 28 H 0.23 3.81 8.06 -2.91 -0.02 3.78 16 29 H 0.12 2.58 7.40 -2.39 -0.02 2.56 16 30 H 0.09 2.05 7.73 -2.39 -0.02 2.03 16 31 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -63.63 294.82 2.95 -60.67 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.48 Total: 15.46 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 4.90 Total: -13.15 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -3.26 Total: -87.09 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.04 Total: -26.36 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 6.21 SS G_CDS: -1.16 Total: 5.05 kcal Total: -63.63 2.95 -60.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597456238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.830 kcal (2) G-P(sol) polarization free energy of solvation -63.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds