Wall clock time and date at job start Mon Mar 30 2020 07:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 103.00335 * 2 1 4 4 C 1.38949 * 119.67739 * 180.25477 * 3 2 1 5 5 C 1.39024 * 119.00750 * 180.31424 * 4 3 2 6 6 N 1.39571 * 120.81351 * 179.71232 * 5 4 3 7 7 C 1.34778 * 120.00212 * 327.24131 * 6 5 4 8 8 O 1.21278 * 119.99860 * 354.74146 * 7 6 5 9 9 C 1.50701 * 120.00072 * 174.73077 * 7 6 5 10 10 H 1.09004 * 109.46593 * 60.00833 * 9 7 6 11 11 C 1.53000 * 109.47265 * 300.00697 * 9 7 6 12 12 C 1.50706 * 109.46901 * 180.02562 * 9 7 6 13 13 H 1.07994 * 120.00251 * 0.02562 * 12 9 7 14 14 C 1.37876 * 119.99589 * 180.02562 * 12 9 7 15 15 N 1.31523 * 120.00215 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00060 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47138 * 89.99668 * 16 14 12 18 18 H 1.48494 * 109.47459 * 210.00115 * 16 14 12 19 19 H 1.48503 * 109.47033 * 330.00402 * 16 14 12 20 20 C 1.39631 * 118.36801 * 359.44570 * 5 4 3 21 21 C 1.37795 * 119.25897 * 0.26997 * 20 5 4 22 22 N 1.32049 * 120.92763 * 0.02562 * 21 20 5 23 23 H 1.08998 * 109.46875 * 59.99765 * 1 2 3 24 24 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46825 * 300.00208 * 1 2 3 26 26 H 1.08001 * 120.49535 * 0.05407 * 4 3 2 27 27 H 0.96996 * 120.00238 * 147.24878 * 6 5 4 28 28 H 1.09004 * 109.46981 * 179.97438 * 11 9 7 29 29 H 1.08995 * 109.46905 * 299.99850 * 11 9 7 30 30 H 1.08999 * 109.46947 * 59.99743 * 11 9 7 31 31 H 0.96994 * 119.99699 * 180.02562 * 15 14 12 32 32 H 1.08005 * 120.37777 * 180.29209 * 20 5 4 33 33 H 1.07996 * 119.53578 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.5415 2.1155 -0.0054 5 6 3.8385 3.4736 0.0014 6 7 5.1623 3.9160 0.0023 7 6 6.1132 3.1954 0.6292 8 8 5.8052 2.2145 1.2725 9 6 7.5591 3.6083 0.5306 10 1 7.6787 4.6125 0.9375 11 6 7.9938 3.5973 -0.9363 12 6 8.4116 2.6436 1.3140 13 1 7.9524 1.8142 1.8312 14 6 9.7779 2.8199 1.3705 15 7 10.3372 3.8303 0.7410 16 14 10.8347 1.6238 2.3409 17 1 11.2645 0.5120 1.4553 18 1 12.0312 2.3315 2.8631 19 1 10.0485 1.0769 3.4758 20 6 2.7800 4.3842 0.0014 21 6 1.4854 3.9120 0.0005 22 7 1.2360 2.6153 0.0001 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.3336 1.3812 -0.0104 27 1 5.3979 4.7421 -0.4481 28 1 9.0396 3.8964 -1.0076 29 1 7.8742 2.5932 -1.3431 30 1 7.3772 4.2948 -1.5032 31 1 11.2984 3.9541 0.7805 32 1 2.9736 5.4467 0.0018 33 1 0.6633 4.6124 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597459190.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:52 Heat of formation + Delta-G solvation = -8.529975 kcal Electronic energy + Delta-G solvation = -17425.833416 eV Core-core repulsion = 14577.565193 eV Total energy + Delta-G solvation = -2848.268223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -40.42465 -38.70710 -34.83632 -33.92210 -31.24647 -31.19034 -29.89044 -28.83434 -25.25371 -24.06178 -23.66418 -22.12773 -19.72646 -18.42491 -16.63839 -16.35890 -15.94995 -15.77128 -15.49465 -14.64371 -14.33934 -14.29192 -14.09105 -13.65927 -13.32316 -13.07696 -12.73832 -12.63053 -11.96956 -11.63315 -11.11122 -10.89614 -10.76432 -10.74163 -10.47898 -10.34254 -10.06031 -9.77204 -9.70987 -9.10587 -8.81500 -8.45693 -8.31686 -7.52241 -6.12480 -4.16646 1.08245 1.35799 1.50658 2.29959 3.29550 3.34267 3.35823 3.40145 3.49997 3.88912 4.40319 4.61429 5.07334 5.10596 5.14169 5.20241 5.22118 5.25163 5.57141 5.70626 5.80549 6.01330 6.26348 6.42085 6.49909 6.68013 6.76575 6.98997 7.31496 7.60343 7.77662 7.83943 7.96404 8.19928 8.84292 8.92839 9.49634 10.95132 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028496 B = 0.004621 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.373950 B = 6057.989595 C = 6772.307173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.076 6.076 3 C 0.135 3.865 4 C -0.157 4.157 5 C 0.224 3.776 6 N -0.683 5.683 7 C 0.518 3.482 8 O -0.514 6.514 9 C 0.033 3.967 10 H 0.057 0.943 11 C -0.134 4.134 12 C -0.506 4.506 13 H 0.076 0.924 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.218 4.218 21 C 0.128 3.872 22 N -0.515 5.515 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.412 0.588 28 H 0.097 0.903 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.262 0.738 32 H 0.137 0.863 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.916 0.624 -4.433 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.163 5.837 3 C -0.113 4.113 4 C -0.186 4.186 5 C 0.118 3.882 6 N -0.329 5.329 7 C 0.309 3.691 8 O -0.386 6.386 9 C 0.011 3.989 10 H 0.075 0.925 11 C -0.192 4.192 12 C -0.544 4.544 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.243 4.243 21 C -0.031 4.031 22 N -0.230 5.230 23 H 0.103 0.897 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.169 0.831 27 H 0.249 0.751 28 H 0.115 0.885 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.056 -1.372 -3.971 16.597 hybrid contribution 0.773 1.423 0.259 1.640 sum -15.283 0.052 -3.712 15.728 Atomic orbital electron populations 1.23413 0.94395 1.05703 1.06475 1.85696 1.06885 0.99419 1.91743 1.22737 0.91535 0.98071 0.98942 1.21658 0.96332 0.95985 1.04591 1.17999 0.85463 0.92443 0.92341 1.44189 1.05007 1.28032 1.55680 1.22480 0.89012 0.82022 0.75595 1.90581 1.82697 1.26452 1.38896 1.18935 0.84095 0.99545 0.96277 0.92497 1.21777 1.04344 0.98555 0.94558 1.21102 0.91107 1.11700 1.30494 0.90629 1.24940 0.97870 0.95654 0.95599 1.69860 1.11158 1.29500 1.42913 0.86415 0.79489 0.80787 0.80355 1.20543 1.21215 1.19663 1.21842 0.92958 1.00387 1.09154 1.22365 0.95274 0.91403 0.94097 1.67961 1.34744 1.02615 1.17692 0.89666 0.88196 0.89628 0.83075 0.75121 0.88463 0.94738 0.96785 0.92795 0.84485 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 10.02 101.05 1.01 -0.31 16 2 S -0.08 -1.06 22.55 -107.50 -2.42 -3.49 16 3 C 0.13 2.18 6.99 -16.98 -0.12 2.06 16 4 C -0.16 -2.80 8.46 -39.03 -0.33 -3.13 16 5 C 0.22 3.69 6.33 -83.52 -0.53 3.16 16 6 N -0.68 -11.59 5.20 -9.73 -0.05 -11.64 16 7 C 0.52 11.27 6.91 -10.98 -0.08 11.20 16 8 O -0.51 -12.81 13.17 5.56 0.07 -12.74 16 9 C 0.03 0.77 2.64 -92.92 -0.24 0.53 16 10 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 11 C -0.13 -2.93 8.87 37.16 0.33 -2.60 16 12 C -0.51 -13.86 8.37 -34.44 -0.29 -14.15 16 13 H 0.08 2.19 6.75 -52.49 -0.35 1.84 16 14 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 15 N -0.90 -24.37 11.32 55.43 0.63 -23.74 16 16 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.22 -2.83 10.05 -39.22 -0.39 -3.22 16 21 C 0.13 1.61 11.17 -17.62 -0.20 1.41 16 22 N -0.51 -7.57 9.42 -12.19 -0.11 -7.68 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.15 3.04 6.48 -52.49 -0.34 2.70 16 27 H 0.41 5.66 8.41 -40.82 -0.34 5.31 16 28 H 0.10 2.35 6.07 -51.93 -0.32 2.04 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.01 0.24 7.69 -51.93 -0.40 -0.16 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 298.17 15.07 4.49 4.49 Total: -1.00 -30.68 298.17 -7.19 -37.87 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -3.85 Total: 4.10 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.93 Total: -3.53 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.46 Total: -43.06 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.42 Total: -3.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.68 -7.19 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597459190.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.342 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds