Wall clock time and date at job start Mon Mar 30 2020 07:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 103.00335 * 2 1 4 4 C 1.38949 * 119.67739 * 180.25477 * 3 2 1 5 5 C 1.39024 * 119.00750 * 180.31424 * 4 3 2 6 6 N 1.39571 * 120.81351 * 179.71232 * 5 4 3 7 7 C 1.34778 * 120.00212 * 327.24131 * 6 5 4 8 8 O 1.21278 * 119.99860 * 354.74146 * 7 6 5 9 9 C 1.50701 * 120.00072 * 174.73077 * 7 6 5 10 10 H 1.09004 * 109.46593 * 60.00833 * 9 7 6 11 11 C 1.53000 * 109.47265 * 300.00697 * 9 7 6 12 12 C 1.50706 * 109.46901 * 180.02562 * 9 7 6 13 13 H 1.07994 * 120.00251 * 0.02562 * 12 9 7 14 14 C 1.37876 * 119.99589 * 180.02562 * 12 9 7 15 15 N 1.31523 * 120.00215 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00060 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47138 * 89.99668 * 16 14 12 18 18 H 1.48494 * 109.47459 * 210.00115 * 16 14 12 19 19 H 1.48503 * 109.47033 * 330.00402 * 16 14 12 20 20 C 1.39631 * 118.36801 * 359.44570 * 5 4 3 21 21 C 1.37795 * 119.25897 * 0.26997 * 20 5 4 22 22 N 1.32049 * 120.92763 * 0.02562 * 21 20 5 23 23 H 1.08998 * 109.46875 * 59.99765 * 1 2 3 24 24 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46825 * 300.00208 * 1 2 3 26 26 H 1.08001 * 120.49535 * 0.05407 * 4 3 2 27 27 H 0.96996 * 120.00238 * 147.24878 * 6 5 4 28 28 H 1.09004 * 109.46981 * 179.97438 * 11 9 7 29 29 H 1.08995 * 109.46905 * 299.99850 * 11 9 7 30 30 H 1.08999 * 109.46947 * 59.99743 * 11 9 7 31 31 H 0.96994 * 119.99699 * 180.02562 * 15 14 12 32 32 H 1.08005 * 120.37777 * 180.29209 * 20 5 4 33 33 H 1.07996 * 119.53578 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.5415 2.1155 -0.0054 5 6 3.8385 3.4736 0.0014 6 7 5.1623 3.9160 0.0023 7 6 6.1132 3.1954 0.6292 8 8 5.8052 2.2145 1.2725 9 6 7.5591 3.6083 0.5306 10 1 7.6787 4.6125 0.9375 11 6 7.9938 3.5973 -0.9363 12 6 8.4116 2.6436 1.3140 13 1 7.9524 1.8142 1.8312 14 6 9.7779 2.8199 1.3705 15 7 10.3372 3.8303 0.7410 16 14 10.8347 1.6238 2.3409 17 1 11.2645 0.5120 1.4553 18 1 12.0312 2.3315 2.8631 19 1 10.0485 1.0769 3.4758 20 6 2.7800 4.3842 0.0014 21 6 1.4854 3.9120 0.0005 22 7 1.2360 2.6153 0.0001 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.3336 1.3812 -0.0104 27 1 5.3979 4.7421 -0.4481 28 1 9.0396 3.8964 -1.0076 29 1 7.8742 2.5932 -1.3431 30 1 7.3772 4.2948 -1.5032 31 1 11.2984 3.9541 0.7805 32 1 2.9736 5.4467 0.0018 33 1 0.6633 4.6124 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597459190.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:51 Heat of formation + Delta-G solvation = -28.552358 kcal Electronic energy + Delta-G solvation = -17426.701652 eV Core-core repulsion = 14577.565193 eV Total energy + Delta-G solvation = -2849.136459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.77852 -40.16171 -36.31705 -35.87082 -32.97072 -32.31382 -31.39815 -29.69426 -27.25131 -25.56587 -24.82592 -23.64712 -21.33549 -19.71898 -18.30897 -18.09979 -17.22488 -17.14244 -16.86051 -16.45347 -15.76109 -15.49119 -15.32584 -14.92999 -14.65669 -14.51093 -14.18672 -13.62461 -13.59366 -13.03444 -12.97339 -12.74092 -12.63591 -12.34253 -12.06655 -12.01661 -11.48426 -11.10496 -11.01988 -10.84276 -10.58285 -10.35746 -9.68383 -8.62620 -8.18927 -6.29296 -0.06710 0.13788 0.43822 1.35622 1.39817 1.41293 1.52285 1.72476 2.05013 2.43984 2.70673 3.11547 3.58112 3.93683 4.01326 4.15930 4.20606 4.35073 4.39030 4.55471 4.69281 4.72976 4.87901 4.91732 4.94508 5.06262 5.27017 5.44200 5.67554 5.71767 5.87974 6.13951 6.49319 6.72632 6.78537 7.21412 7.40286 8.86900 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028496 B = 0.004621 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.373950 B = 6057.989595 C = 6772.307173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.113 6.113 3 C 0.126 3.874 4 C -0.185 4.185 5 C 0.200 3.800 6 N -0.664 5.664 7 C 0.522 3.478 8 O -0.555 6.555 9 C 0.029 3.971 10 H 0.053 0.947 11 C -0.122 4.122 12 C -0.532 4.532 13 H 0.049 0.951 14 C 0.024 3.976 15 N -0.908 5.908 16 Si 0.953 3.047 17 H -0.275 1.275 18 H -0.274 1.274 19 H -0.280 1.280 20 C -0.200 4.200 21 C 0.133 3.867 22 N -0.516 5.516 23 H 0.090 0.910 24 H 0.126 0.874 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.429 0.571 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.055 0.945 31 H 0.266 0.734 32 H 0.177 0.823 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.840 2.074 -4.949 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S 0.125 5.875 3 C -0.121 4.121 4 C -0.214 4.214 5 C 0.095 3.905 6 N -0.311 5.311 7 C 0.313 3.687 8 O -0.431 6.431 9 C 0.008 3.992 10 H 0.070 0.930 11 C -0.180 4.180 12 C -0.571 4.571 13 H 0.067 0.933 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.779 3.221 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.205 1.205 20 C -0.225 4.225 21 C -0.026 4.026 22 N -0.231 5.231 23 H 0.109 0.891 24 H 0.145 0.855 25 H 0.105 0.895 26 H 0.135 0.865 27 H 0.269 0.731 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.194 0.806 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.001 0.115 -4.523 18.561 hybrid contribution 1.231 1.008 0.398 1.640 sum -16.770 1.123 -4.126 17.306 Atomic orbital electron populations 1.23489 0.90544 1.07549 1.06728 1.85816 1.11083 0.99028 1.91571 1.22802 0.91124 0.99125 0.99049 1.21527 0.96474 0.96353 1.07023 1.18240 0.85595 0.92691 0.93982 1.43694 1.04835 1.27811 1.54771 1.21998 0.89169 0.81775 0.75732 1.90569 1.83226 1.28299 1.40979 1.18846 0.85287 0.98239 0.96837 0.92963 1.21595 1.03673 0.98900 0.93830 1.21245 0.92217 1.12073 1.31523 0.93316 1.25532 0.98636 0.97052 0.96347 1.69926 1.11517 1.30094 1.43159 0.85624 0.78229 0.79253 0.78972 1.20034 1.19863 1.20507 1.22231 0.91875 1.01660 1.06709 1.23201 0.96502 0.91208 0.91726 1.68062 1.34057 1.03524 1.17466 0.89082 0.85533 0.89509 0.86527 0.73134 0.90657 0.95903 0.92597 0.92455 0.80606 0.77835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 10.02 113.37 1.14 -0.97 16 2 S -0.11 -3.20 22.55 -56.49 -1.27 -4.47 16 3 C 0.13 4.05 6.99 84.75 0.59 4.64 16 4 C -0.18 -6.77 8.46 22.63 0.19 -6.57 16 5 C 0.20 6.39 6.33 38.43 0.24 6.63 16 6 N -0.66 -22.02 5.20 -303.09 -1.58 -23.59 16 7 C 0.52 23.26 6.91 87.66 0.61 23.86 16 8 O -0.55 -29.04 13.17 -3.02 -0.04 -29.08 16 9 C 0.03 1.40 2.64 -12.28 -0.03 1.37 16 10 H 0.05 2.55 8.14 -2.38 -0.02 2.53 16 11 C -0.12 -5.32 8.87 71.98 0.64 -4.68 16 12 C -0.53 -30.12 8.37 25.60 0.21 -29.90 16 13 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 14 C 0.02 1.32 5.30 84.65 0.45 1.77 16 15 N -0.91 -49.60 11.32 21.45 0.24 -49.35 16 16 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 C -0.20 -4.49 10.05 22.50 0.23 -4.26 16 21 C 0.13 2.81 11.17 84.56 0.94 3.75 16 22 N -0.52 -13.97 9.42 -192.48 -1.81 -15.79 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.12 5.05 6.48 -2.91 -0.02 5.04 16 27 H 0.43 10.87 8.41 -92.71 -0.78 10.09 16 28 H 0.07 3.65 6.07 -2.38 -0.01 3.63 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.91 7.69 -2.39 -0.02 1.89 16 31 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 32 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -69.38 298.17 3.13 -66.25 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.36 Total: 14.01 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.21 Total: -4.37 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -3.15 Total: -88.73 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.04 Total: -29.08 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -1.27 Total: -4.47 kcal Total: -69.38 3.13 -66.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597459190.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.694 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds