Wall clock time and date at job start Mon Mar 30 2020 07:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76200 * 103.00293 * 2 1 4 4 C 1.38951 * 119.67943 * 180.02562 * 3 2 1 5 5 C 1.39023 * 119.00842 * 179.97438 * 4 3 2 6 6 N 1.39574 * 120.81246 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00089 * 325.07913 * 6 5 4 8 8 O 1.21281 * 120.00197 * 4.68698 * 7 6 5 9 9 C 1.50698 * 119.99887 * 184.68194 * 7 6 5 10 10 H 1.08998 * 109.47605 * 300.00292 * 9 7 6 11 11 C 1.53005 * 109.46950 * 60.00459 * 9 7 6 12 12 C 1.50697 * 109.47260 * 180.02562 * 9 7 6 13 13 H 1.07999 * 120.00118 * 0.02562 * 12 9 7 14 14 C 1.37879 * 120.00103 * 180.02562 * 12 9 7 15 15 N 1.31512 * 119.99994 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99968 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47176 * 119.99911 * 16 14 12 19 19 H 1.48497 * 109.47210 * 239.99497 * 16 14 12 20 20 C 1.39638 * 118.36806 * 0.02562 * 5 4 3 21 21 C 1.37784 * 119.25496 * 359.97438 * 20 5 4 22 22 N 1.32049 * 120.93945 * 359.97438 * 21 20 5 23 23 H 1.08993 * 109.47017 * 59.99956 * 1 2 3 24 24 H 1.08995 * 109.47396 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46743 * 300.00291 * 1 2 3 26 26 H 1.07995 * 120.49100 * 359.97438 * 4 3 2 27 27 H 0.97006 * 119.99536 * 145.07551 * 6 5 4 28 28 H 1.09002 * 109.46882 * 180.02562 * 11 9 7 29 29 H 1.08998 * 109.46870 * 299.99444 * 11 9 7 30 30 H 1.08991 * 109.47529 * 60.00046 * 11 9 7 31 31 H 0.97001 * 120.00173 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.37021 * 179.72816 * 20 5 4 33 33 H 1.08008 * 119.52975 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5415 2.1156 -0.0005 5 6 3.8384 3.4737 -0.0011 6 7 5.1622 3.9162 -0.0011 7 6 6.1046 3.2224 0.6674 8 8 5.8204 2.1693 1.1978 9 6 7.5115 3.7551 0.7560 10 1 7.9241 3.8602 -0.2474 11 6 7.4974 5.1201 1.4472 12 6 8.3620 2.7979 1.5506 13 1 7.9274 1.8940 1.9511 14 6 9.6951 3.0762 1.7663 15 7 10.2243 4.1771 1.2791 16 14 10.7495 1.8893 2.7507 17 1 9.9220 0.7353 3.1850 18 1 11.8704 1.4050 1.9055 19 1 11.2944 2.5843 3.9445 20 6 2.7798 4.3843 -0.0005 21 6 1.4854 3.9120 0.0000 22 7 1.2358 2.6153 -0.0005 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.3335 1.3814 -0.0005 27 1 5.4039 4.7230 -0.4824 28 1 8.5150 5.5056 1.5108 29 1 6.8824 5.8122 0.8720 30 1 7.0849 5.0151 2.4505 31 1 11.1622 4.3727 1.4305 32 1 2.9734 5.4468 0.0035 33 1 0.6632 4.6124 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597459191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:56 Heat of formation + Delta-G solvation = -8.050580 kcal Electronic energy + Delta-G solvation = -17414.282040 eV Core-core repulsion = 14566.034605 eV Total energy + Delta-G solvation = -2848.247435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.42055 -38.70369 -34.82710 -33.92771 -31.25284 -31.18669 -29.87982 -28.83546 -25.25562 -24.06020 -23.64267 -22.12678 -19.74623 -18.41478 -16.72034 -16.38258 -15.93912 -15.59734 -15.48016 -14.75475 -14.34564 -14.29496 -14.06003 -13.65772 -13.29211 -13.13798 -12.70850 -12.64098 -11.86885 -11.74846 -11.11082 -10.91071 -10.78876 -10.64148 -10.44235 -10.36383 -10.06390 -9.76692 -9.71757 -9.08972 -8.78508 -8.44813 -8.36031 -7.52076 -6.12682 -4.16707 1.08218 1.36281 1.50771 2.29943 3.27865 3.33814 3.36276 3.41681 3.50917 3.87440 4.40371 4.62139 5.07344 5.11576 5.14014 5.21075 5.22537 5.25729 5.58413 5.70506 5.81175 6.03121 6.26965 6.42811 6.49472 6.67853 6.77400 6.99625 7.31201 7.60658 7.77801 7.83893 7.96388 8.20046 8.84981 8.93222 9.49636 10.94955 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.004616 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.491487 B = 6064.241373 C = 6907.469621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.076 6.076 3 C 0.133 3.867 4 C -0.156 4.156 5 C 0.221 3.779 6 N -0.683 5.683 7 C 0.518 3.482 8 O -0.515 6.515 9 C 0.032 3.968 10 H 0.058 0.942 11 C -0.134 4.134 12 C -0.505 4.505 13 H 0.076 0.924 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.901 3.099 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.215 4.215 21 C 0.127 3.873 22 N -0.514 5.514 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.156 0.844 27 H 0.412 0.588 28 H 0.097 0.903 29 H 0.013 0.987 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.137 0.863 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 0.408 -4.727 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.162 5.838 3 C -0.115 4.115 4 C -0.185 4.185 5 C 0.114 3.886 6 N -0.330 5.330 7 C 0.309 3.691 8 O -0.388 6.388 9 C 0.011 3.989 10 H 0.076 0.924 11 C -0.192 4.192 12 C -0.543 4.543 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.729 3.271 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.240 4.240 21 C -0.033 4.033 22 N -0.229 5.229 23 H 0.103 0.897 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.173 0.827 27 H 0.249 0.751 28 H 0.115 0.885 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.995 -1.612 -4.300 16.641 hybrid contribution 0.765 1.460 0.293 1.674 sum -15.230 -0.152 -4.007 15.749 Atomic orbital electron populations 1.23413 0.94412 1.05698 1.06471 1.85687 1.06867 0.99445 1.91764 1.22773 0.91612 0.98056 0.99055 1.21804 0.96362 0.96148 1.04155 1.18016 0.85452 0.92379 0.92750 1.44147 1.05369 1.30360 1.53079 1.22474 0.88194 0.83643 0.74756 1.90564 1.81336 1.22289 1.44565 1.18938 0.85005 0.95407 0.99509 0.92414 1.21777 1.03776 0.95579 0.98114 1.21147 0.93577 1.06429 1.33179 0.90564 1.24942 0.97782 0.95569 0.95797 1.69865 1.13327 1.24500 1.45731 0.86370 0.79986 0.81143 0.79638 1.19465 1.20935 1.20971 1.21869 0.92973 1.00448 1.08758 1.22363 0.95285 0.91400 0.94261 1.67961 1.34789 1.02624 1.17525 0.89674 0.88201 0.89633 0.82679 0.75122 0.88478 0.96786 0.94799 0.92851 0.84467 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 10.02 101.05 1.01 -0.31 16 2 S -0.08 -1.06 22.55 -107.50 -2.42 -3.49 16 3 C 0.13 2.14 7.00 -16.97 -0.12 2.02 16 4 C -0.16 -2.78 8.50 -39.03 -0.33 -3.11 16 5 C 0.22 3.62 6.34 -83.52 -0.53 3.10 16 6 N -0.68 -11.58 5.20 -9.73 -0.05 -11.63 16 7 C 0.52 11.27 7.01 -10.99 -0.08 11.20 16 8 O -0.52 -12.80 12.95 5.56 0.07 -12.73 16 9 C 0.03 0.77 2.63 -92.92 -0.24 0.52 16 10 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 11 C -0.13 -2.93 8.87 37.16 0.33 -2.60 16 12 C -0.50 -13.84 8.38 -34.44 -0.29 -14.13 16 13 H 0.08 2.22 6.75 -52.49 -0.35 1.86 16 14 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 15 N -0.90 -24.36 11.32 55.43 0.63 -23.73 16 16 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.21 -2.81 10.05 -39.22 -0.39 -3.20 16 21 C 0.13 1.59 11.16 -17.62 -0.20 1.39 16 22 N -0.51 -7.56 9.42 -12.19 -0.11 -7.67 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 26 H 0.16 3.10 6.31 -52.49 -0.33 2.77 16 27 H 0.41 5.66 8.39 -40.82 -0.34 5.32 16 28 H 0.10 2.35 6.07 -51.93 -0.32 2.03 16 29 H 0.01 0.24 7.68 -51.93 -0.40 -0.16 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -30.64 297.90 -7.19 -37.83 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.84 Total: 4.19 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.93 Total: -3.60 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.46 Total: -43.03 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.07 Total: -12.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.42 Total: -3.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.64 -7.19 -37.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597459191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.784 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds