Wall clock time and date at job start Mon Mar 30 2020 07:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76200 * 103.00293 * 2 1 4 4 C 1.38951 * 119.67943 * 180.02562 * 3 2 1 5 5 C 1.39023 * 119.00842 * 179.97438 * 4 3 2 6 6 N 1.39574 * 120.81246 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00089 * 325.07913 * 6 5 4 8 8 O 1.21281 * 120.00197 * 4.68698 * 7 6 5 9 9 C 1.50698 * 119.99887 * 184.68194 * 7 6 5 10 10 H 1.08998 * 109.47605 * 300.00292 * 9 7 6 11 11 C 1.53005 * 109.46950 * 60.00459 * 9 7 6 12 12 C 1.50697 * 109.47260 * 180.02562 * 9 7 6 13 13 H 1.07999 * 120.00118 * 0.02562 * 12 9 7 14 14 C 1.37879 * 120.00103 * 180.02562 * 12 9 7 15 15 N 1.31512 * 119.99994 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99968 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47176 * 119.99911 * 16 14 12 19 19 H 1.48497 * 109.47210 * 239.99497 * 16 14 12 20 20 C 1.39638 * 118.36806 * 0.02562 * 5 4 3 21 21 C 1.37784 * 119.25496 * 359.97438 * 20 5 4 22 22 N 1.32049 * 120.93945 * 359.97438 * 21 20 5 23 23 H 1.08993 * 109.47017 * 59.99956 * 1 2 3 24 24 H 1.08995 * 109.47396 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46743 * 300.00291 * 1 2 3 26 26 H 1.07995 * 120.49100 * 359.97438 * 4 3 2 27 27 H 0.97006 * 119.99536 * 145.07551 * 6 5 4 28 28 H 1.09002 * 109.46882 * 180.02562 * 11 9 7 29 29 H 1.08998 * 109.46870 * 299.99444 * 11 9 7 30 30 H 1.08991 * 109.47529 * 60.00046 * 11 9 7 31 31 H 0.97001 * 120.00173 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.37021 * 179.72816 * 20 5 4 33 33 H 1.08008 * 119.52975 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5415 2.1156 -0.0005 5 6 3.8384 3.4737 -0.0011 6 7 5.1622 3.9162 -0.0011 7 6 6.1046 3.2224 0.6674 8 8 5.8204 2.1693 1.1978 9 6 7.5115 3.7551 0.7560 10 1 7.9241 3.8602 -0.2474 11 6 7.4974 5.1201 1.4472 12 6 8.3620 2.7979 1.5506 13 1 7.9274 1.8940 1.9511 14 6 9.6951 3.0762 1.7663 15 7 10.2243 4.1771 1.2791 16 14 10.7495 1.8893 2.7507 17 1 9.9220 0.7353 3.1850 18 1 11.8704 1.4050 1.9055 19 1 11.2944 2.5843 3.9445 20 6 2.7798 4.3843 -0.0005 21 6 1.4854 3.9120 0.0000 22 7 1.2358 2.6153 -0.0005 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.3335 1.3814 -0.0005 27 1 5.4039 4.7230 -0.4824 28 1 8.5150 5.5056 1.5108 29 1 6.8824 5.8122 0.8720 30 1 7.0849 5.0151 2.4505 31 1 11.1622 4.3727 1.4305 32 1 2.9734 5.4468 0.0035 33 1 0.6632 4.6124 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597459191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:56 Heat of formation + Delta-G solvation = -28.028103 kcal Electronic energy + Delta-G solvation = -17415.148330 eV Core-core repulsion = 14566.034605 eV Total energy + Delta-G solvation = -2849.113725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.77290 -40.15652 -36.30729 -35.87058 -32.97780 -32.30625 -31.38550 -29.69443 -27.24690 -25.56004 -24.80155 -23.64206 -21.35958 -19.70695 -18.35094 -18.13259 -17.11921 -17.03623 -16.89281 -16.45514 -15.97068 -15.42704 -15.26338 -14.87060 -14.75826 -14.45700 -14.19680 -13.62331 -13.56783 -13.06454 -12.95891 -12.76426 -12.61582 -12.28271 -12.07248 -11.99341 -11.48459 -11.08089 -11.02579 -10.84080 -10.58773 -10.30918 -9.71813 -8.62241 -8.18982 -6.29223 -0.06740 0.14813 0.44097 1.35699 1.38260 1.41164 1.53711 1.71344 2.06151 2.44044 2.69892 3.11513 3.59113 3.95323 4.02836 4.16527 4.20592 4.34946 4.38983 4.56297 4.70552 4.74566 4.89297 4.91680 4.94399 5.09513 5.27668 5.44559 5.68036 5.72774 5.88986 6.14689 6.49877 6.72584 6.78909 7.22331 7.40488 8.86968 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.004616 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.491487 B = 6064.241373 C = 6907.469621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.113 6.113 3 C 0.124 3.876 4 C -0.184 4.184 5 C 0.197 3.803 6 N -0.664 5.664 7 C 0.522 3.478 8 O -0.556 6.556 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.122 4.122 12 C -0.531 4.531 13 H 0.048 0.952 14 C 0.024 3.976 15 N -0.908 5.908 16 Si 0.953 3.047 17 H -0.281 1.281 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.197 4.197 21 C 0.131 3.869 22 N -0.515 5.515 23 H 0.090 0.910 24 H 0.126 0.874 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.429 0.571 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.023 0.977 31 H 0.266 0.734 32 H 0.176 0.824 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.805 2.017 -5.041 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S 0.125 5.875 3 C -0.123 4.123 4 C -0.213 4.213 5 C 0.092 3.908 6 N -0.311 5.311 7 C 0.313 3.687 8 O -0.432 6.432 9 C 0.008 3.992 10 H 0.069 0.931 11 C -0.180 4.180 12 C -0.570 4.570 13 H 0.067 0.933 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.779 3.221 17 H -0.206 1.206 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.222 4.222 21 C -0.028 4.028 22 N -0.230 5.230 23 H 0.109 0.891 24 H 0.145 0.855 25 H 0.105 0.895 26 H 0.139 0.861 27 H 0.269 0.731 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.194 0.806 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.966 0.036 -4.647 18.557 hybrid contribution 1.241 0.976 0.344 1.616 sum -16.725 1.012 -4.304 17.299 Atomic orbital electron populations 1.23489 0.90586 1.07545 1.06713 1.85807 1.11036 0.99033 1.91587 1.22836 0.91197 0.99116 0.99156 1.21666 0.96524 0.96540 1.06580 1.18257 0.85579 0.92631 0.94353 1.43656 1.05198 1.30154 1.52114 1.22002 0.88381 0.83281 0.75036 1.90557 1.81968 1.23970 1.46656 1.18850 0.85972 0.95788 0.98641 0.93094 1.21594 1.03157 0.95167 0.98069 1.21278 0.94780 1.06595 1.34329 0.93344 1.25530 0.98545 0.96956 0.96553 1.69930 1.13703 1.25085 1.45982 0.85575 0.78526 0.79137 0.78852 1.20635 1.19921 1.19895 1.22247 0.91891 1.01693 1.06389 1.23195 0.96508 0.91212 0.91892 1.68063 1.34107 1.03528 1.17320 0.89091 0.85533 0.89533 0.86087 0.73141 0.90752 0.92344 0.95820 0.92470 0.80627 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 10.02 113.37 1.14 -0.97 16 2 S -0.11 -3.18 22.55 -56.49 -1.27 -4.45 16 3 C 0.12 3.98 7.00 84.75 0.59 4.58 16 4 C -0.18 -6.74 8.50 22.63 0.19 -6.55 16 5 C 0.20 6.28 6.34 38.44 0.24 6.52 16 6 N -0.66 -21.99 5.20 -303.09 -1.58 -23.56 16 7 C 0.52 23.22 7.01 87.66 0.61 23.84 16 8 O -0.56 -29.03 12.95 -3.03 -0.04 -29.06 16 9 C 0.03 1.38 2.63 -12.29 -0.03 1.35 16 10 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 11 C -0.12 -5.24 8.87 71.98 0.64 -4.60 16 12 C -0.53 -30.08 8.38 25.60 0.21 -29.86 16 13 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 14 C 0.02 1.30 5.30 84.66 0.45 1.75 16 15 N -0.91 -49.55 11.32 21.45 0.24 -49.30 16 16 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 C -0.20 -4.45 10.05 22.50 0.23 -4.22 16 21 C 0.13 2.78 11.16 84.55 0.94 3.72 16 22 N -0.51 -13.97 9.42 -192.47 -1.81 -15.78 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.12 5.23 6.31 -2.91 -0.02 5.22 16 27 H 0.43 10.87 8.39 -92.70 -0.78 10.09 16 28 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 29 H 0.06 1.93 7.68 -2.39 -0.02 1.92 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 32 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.20 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -69.36 297.90 3.14 -66.22 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.36 Total: 13.99 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.22 Total: -4.44 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -3.15 Total: -88.65 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.04 Total: -29.06 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -1.27 Total: -4.45 kcal Total: -69.36 3.14 -66.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597459191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.189 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds