Wall clock time and date at job start Mon Mar 30 2020 07:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76190 * 103.00127 * 2 1 4 4 C 1.39042 * 120.52122 * 0.02562 * 3 2 1 5 5 C 1.38731 * 118.42544 * 179.97438 * 4 3 2 6 6 C 1.38109 * 119.37501 * 0.25071 * 5 4 3 7 7 N 1.31989 * 121.00435 * 359.45038 * 6 5 4 8 8 C 1.32222 * 121.71699 * 0.58362 * 7 6 5 9 9 N 1.39585 * 119.74116 * 179.70154 * 8 7 6 10 10 C 1.34784 * 120.00116 * 359.97438 * 9 8 7 11 11 O 1.21285 * 119.99338 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00202 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.47308 * 59.99433 * 12 10 9 14 14 C 1.53012 * 109.46975 * 300.00023 * 12 10 9 15 15 C 1.50692 * 109.47113 * 180.02562 * 12 10 9 16 16 H 1.08000 * 120.00226 * 359.97438 * 15 12 10 17 17 C 1.37885 * 120.00021 * 180.02562 * 15 12 10 18 18 N 1.31515 * 119.99891 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00180 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.47145 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47360 * 119.99592 * 19 17 15 22 22 H 1.48505 * 109.47212 * 240.00213 * 19 17 15 23 23 H 1.08995 * 109.47341 * 59.99892 * 1 2 3 24 24 H 1.08997 * 109.47270 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46841 * 299.99651 * 1 2 3 26 26 H 1.08004 * 120.78370 * 359.95099 * 4 3 2 27 27 H 1.08002 * 120.30837 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.49199 * 179.72274 * 6 5 4 29 29 H 0.97000 * 120.00380 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.47088 * 59.99711 * 14 12 10 31 31 H 1.08999 * 109.46449 * 180.02562 * 14 12 10 32 32 H 1.09002 * 109.46621 * 299.99830 * 14 12 10 33 33 H 0.96995 * 119.99575 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7167 0.0000 4 6 1.2022 2.6742 0.0005 5 6 1.5635 4.0137 0.0011 6 6 2.9019 4.3543 -0.0042 7 7 3.8398 3.4256 0.0011 8 6 3.5424 2.1373 0.0002 9 7 4.5676 1.1900 -0.0004 10 6 5.8548 1.5899 -0.0005 11 8 6.1221 2.7729 -0.0006 12 6 6.9616 0.5672 -0.0005 13 1 6.8796 -0.0570 -0.8903 14 6 6.8467 -0.3086 1.2490 15 6 8.2947 1.2697 0.0000 16 1 8.3364 2.3489 -0.0001 17 6 9.4613 0.5348 -0.0004 18 7 9.4106 -0.7794 -0.0008 19 14 11.1139 1.4057 -0.0005 20 1 10.8990 2.8751 -0.0007 21 1 11.8784 1.0169 1.2117 22 1 11.8779 1.0175 -1.2133 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.1624 2.3821 0.0002 27 1 0.8052 4.7827 0.0011 28 1 3.1853 5.3964 -0.0084 29 1 4.3538 0.2438 -0.0006 30 1 5.8824 -0.8168 1.2491 31 1 7.6476 -1.0480 1.2491 32 1 6.9286 0.3155 2.1388 33 1 10.2313 -1.2963 -0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597816016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:26 Heat of formation + Delta-G solvation = 9.299271 kcal Electronic energy + Delta-G solvation = -17627.500653 eV Core-core repulsion = 14780.005564 eV Total energy + Delta-G solvation = -2847.495089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37368 -38.41383 -34.38360 -33.75963 -32.56242 -30.79665 -29.51683 -29.09256 -25.14512 -24.08409 -23.64839 -21.94370 -19.50436 -18.14879 -17.27161 -16.38614 -16.08098 -15.48641 -15.03777 -14.84944 -14.41208 -14.17224 -13.93761 -13.62863 -13.37879 -12.96154 -12.73060 -12.50333 -12.38784 -11.58984 -11.01841 -10.77505 -10.67905 -10.48543 -10.44133 -10.39372 -10.16371 -9.96537 -9.47509 -8.97747 -8.56413 -8.48278 -8.24726 -7.29204 -6.03202 -4.06508 1.08240 1.34570 1.35924 2.23767 3.34026 3.38053 3.41929 3.52271 3.54698 4.11151 4.46981 4.60497 4.78843 4.79552 4.83186 5.01906 5.17669 5.30422 5.37439 5.48918 5.73262 6.03019 6.13137 6.46901 6.60302 6.80914 6.87767 7.01239 7.43306 7.64882 7.81085 8.02660 8.21525 8.45407 9.02670 9.13068 9.59083 11.04585 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.029840 B = 0.005104 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.099381 B = 5484.134776 C = 6327.660183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.110 6.110 3 C -0.192 4.192 4 C -0.061 4.061 5 C -0.206 4.206 6 C 0.132 3.868 7 N -0.461 5.461 8 C 0.402 3.598 9 N -0.664 5.664 10 C 0.506 3.494 11 O -0.472 6.472 12 C 0.032 3.968 13 H 0.056 0.944 14 C -0.135 4.135 15 C -0.501 4.501 16 H 0.076 0.924 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.901 3.099 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.159 0.841 29 H 0.414 0.586 30 H 0.013 0.987 31 H 0.096 0.904 32 H 0.033 0.967 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.540 1.638 0.271 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.128 5.872 3 C -0.310 4.310 4 C -0.093 4.093 5 C -0.229 4.229 6 C -0.029 4.029 7 N -0.176 5.176 8 C 0.164 3.836 9 N -0.311 5.311 10 C 0.295 3.705 11 O -0.339 6.339 12 C 0.011 3.989 13 H 0.074 0.926 14 C -0.193 4.193 15 C -0.539 4.539 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.102 0.898 24 H 0.127 0.873 25 H 0.102 0.898 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.176 0.824 29 H 0.251 0.749 30 H 0.032 0.968 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.496 1.508 0.273 17.563 hybrid contribution -1.116 0.749 0.006 1.344 sum -18.612 2.258 0.279 18.750 Atomic orbital electron populations 1.23650 0.94813 1.07119 1.05461 1.85393 1.06479 1.02037 1.93246 1.22158 0.95688 0.98175 1.15029 1.21263 0.97952 0.92690 0.97392 1.21849 0.97892 0.96061 1.07126 1.22771 0.88285 0.98899 0.92963 1.67882 1.36171 0.98810 1.14769 1.18362 0.84966 0.88366 0.91939 1.44571 1.05655 1.08620 1.72257 1.22472 0.81923 0.92187 0.73918 1.90642 1.81905 1.18506 1.42841 1.18945 0.90747 0.92045 0.97154 0.92621 1.21783 0.99796 1.00574 0.97147 1.21162 0.88499 0.94210 1.50078 0.90576 1.24946 0.99379 0.94878 0.94982 1.69878 1.27816 1.04696 1.51115 0.86373 0.83184 0.80138 0.77432 1.19498 1.21027 1.21030 0.89828 0.87295 0.89831 0.84964 0.84849 0.82429 0.74860 0.96838 0.88501 0.94794 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.17 101.05 0.93 -0.11 16 2 S -0.11 -1.33 21.10 -107.50 -2.27 -3.60 16 3 C -0.19 -2.81 6.14 -38.74 -0.24 -3.04 16 4 C -0.06 -0.72 9.46 -39.10 -0.37 -1.09 16 5 C -0.21 -2.38 10.10 -39.45 -0.40 -2.78 16 6 C 0.13 1.93 11.17 -17.53 -0.20 1.73 16 7 N -0.46 -9.05 7.87 -12.16 -0.10 -9.15 16 8 C 0.40 7.48 7.45 -154.39 -1.15 6.33 16 9 N -0.66 -13.20 5.24 -11.25 -0.06 -13.26 16 10 C 0.51 12.20 7.11 -10.98 -0.08 12.12 16 11 O -0.47 -12.80 13.71 5.55 0.08 -12.72 16 12 C 0.03 0.82 2.64 -92.92 -0.25 0.58 16 13 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 14 C -0.13 -3.16 8.87 37.16 0.33 -2.83 16 15 C -0.50 -14.35 8.37 -34.44 -0.29 -14.64 16 16 H 0.08 2.31 6.75 -52.49 -0.35 1.95 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.90 -25.20 11.32 55.43 0.63 -24.57 16 19 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H 0.08 0.53 7.78 -51.93 -0.40 0.13 16 24 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.54 7.78 -51.92 -0.40 0.13 16 26 H 0.13 1.11 6.04 -52.48 -0.32 0.80 16 27 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 29 H 0.41 7.26 6.65 -40.82 -0.27 6.99 16 30 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 16 31 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 293.39 15.07 4.42 4.42 Total: -1.00 -33.06 293.39 -7.83 -40.89 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.71 Total: 3.22 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.80 Total: -2.19 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.47 Total: -46.97 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.27 Total: -3.60 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.06 -7.83 -40.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597816016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.191 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds