Wall clock time and date at job start Mon Mar 30 2020 07:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76190 * 103.00127 * 2 1 4 4 C 1.39042 * 120.52122 * 0.02562 * 3 2 1 5 5 C 1.38731 * 118.42544 * 179.97438 * 4 3 2 6 6 C 1.38109 * 119.37501 * 0.25071 * 5 4 3 7 7 N 1.31989 * 121.00435 * 359.45038 * 6 5 4 8 8 C 1.32222 * 121.71699 * 0.58362 * 7 6 5 9 9 N 1.39585 * 119.74116 * 179.70154 * 8 7 6 10 10 C 1.34784 * 120.00116 * 359.97438 * 9 8 7 11 11 O 1.21285 * 119.99338 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00202 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.47308 * 59.99433 * 12 10 9 14 14 C 1.53012 * 109.46975 * 300.00023 * 12 10 9 15 15 C 1.50692 * 109.47113 * 180.02562 * 12 10 9 16 16 H 1.08000 * 120.00226 * 359.97438 * 15 12 10 17 17 C 1.37885 * 120.00021 * 180.02562 * 15 12 10 18 18 N 1.31515 * 119.99891 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00180 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.47145 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47360 * 119.99592 * 19 17 15 22 22 H 1.48505 * 109.47212 * 240.00213 * 19 17 15 23 23 H 1.08995 * 109.47341 * 59.99892 * 1 2 3 24 24 H 1.08997 * 109.47270 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46841 * 299.99651 * 1 2 3 26 26 H 1.08004 * 120.78370 * 359.95099 * 4 3 2 27 27 H 1.08002 * 120.30837 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.49199 * 179.72274 * 6 5 4 29 29 H 0.97000 * 120.00380 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.47088 * 59.99711 * 14 12 10 31 31 H 1.08999 * 109.46449 * 180.02562 * 14 12 10 32 32 H 1.09002 * 109.46621 * 299.99830 * 14 12 10 33 33 H 0.96995 * 119.99575 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7167 0.0000 4 6 1.2022 2.6742 0.0005 5 6 1.5635 4.0137 0.0011 6 6 2.9019 4.3543 -0.0042 7 7 3.8398 3.4256 0.0011 8 6 3.5424 2.1373 0.0002 9 7 4.5676 1.1900 -0.0004 10 6 5.8548 1.5899 -0.0005 11 8 6.1221 2.7729 -0.0006 12 6 6.9616 0.5672 -0.0005 13 1 6.8796 -0.0570 -0.8903 14 6 6.8467 -0.3086 1.2490 15 6 8.2947 1.2697 0.0000 16 1 8.3364 2.3489 -0.0001 17 6 9.4613 0.5348 -0.0004 18 7 9.4106 -0.7794 -0.0008 19 14 11.1139 1.4057 -0.0005 20 1 10.8990 2.8751 -0.0007 21 1 11.8784 1.0169 1.2117 22 1 11.8779 1.0175 -1.2133 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.1624 2.3821 0.0002 27 1 0.8052 4.7827 0.0011 28 1 3.1853 5.3964 -0.0084 29 1 4.3538 0.2438 -0.0006 30 1 5.8824 -0.8168 1.2491 31 1 7.6476 -1.0480 1.2491 32 1 6.9286 0.3155 2.1388 33 1 10.2313 -1.2963 -0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597816016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:24 Heat of formation + Delta-G solvation = -12.126858 kcal Electronic energy + Delta-G solvation = -17628.429759 eV Core-core repulsion = 14780.005564 eV Total energy + Delta-G solvation = -2848.424196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71372 -39.99870 -35.95117 -35.79346 -33.67124 -32.69628 -30.81241 -29.77921 -27.24837 -25.53837 -24.86048 -23.51453 -21.17147 -19.45533 -18.43585 -18.14309 -17.86516 -16.87512 -16.40735 -16.24547 -16.18219 -15.27680 -15.10011 -14.85675 -14.49294 -14.44621 -14.25329 -13.54514 -13.40023 -13.33116 -12.98496 -12.73589 -12.61551 -12.29251 -12.04850 -11.79745 -11.45310 -11.27960 -11.09321 -10.94317 -10.53017 -9.92582 -9.77145 -8.32940 -8.17332 -6.28226 -0.03624 0.28138 0.45546 1.39568 1.40953 1.43272 1.55064 1.86350 1.99349 2.44539 2.84844 3.12315 3.52471 3.74147 4.02212 4.10591 4.31974 4.32264 4.34803 4.53375 4.67504 4.79976 4.87813 4.90345 4.93891 5.07329 5.31315 5.42318 5.68932 5.71162 5.89400 6.10554 6.34318 6.78905 7.09134 7.35588 7.46724 8.89177 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.029840 B = 0.005104 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.099381 B = 5484.134776 C = 6327.660183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.148 6.148 3 C -0.183 4.183 4 C -0.059 4.059 5 C -0.175 4.175 6 C 0.104 3.896 7 N -0.515 5.515 8 C 0.354 3.646 9 N -0.657 5.657 10 C 0.511 3.489 11 O -0.516 6.516 12 C 0.029 3.971 13 H 0.045 0.955 14 C -0.120 4.120 15 C -0.530 4.530 16 H 0.049 0.951 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.959 3.041 20 H -0.280 1.280 21 H -0.272 1.272 22 H -0.273 1.273 23 H 0.100 0.900 24 H 0.128 0.872 25 H 0.100 0.900 26 H 0.177 0.823 27 H 0.181 0.819 28 H 0.175 0.825 29 H 0.422 0.578 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.602 1.607 0.410 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.091 5.909 3 C -0.301 4.301 4 C -0.091 4.091 5 C -0.197 4.197 6 C -0.056 4.056 7 N -0.230 5.230 8 C 0.117 3.883 9 N -0.305 5.305 10 C 0.299 3.701 11 O -0.387 6.387 12 C 0.007 3.993 13 H 0.062 0.938 14 C -0.178 4.178 15 C -0.568 4.568 16 H 0.067 0.933 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.785 3.215 20 H -0.206 1.206 21 H -0.197 1.197 22 H -0.198 1.198 23 H 0.118 0.882 24 H 0.147 0.853 25 H 0.118 0.882 26 H 0.194 0.806 27 H 0.198 0.802 28 H 0.192 0.808 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.628 1.448 0.413 20.682 hybrid contribution -0.408 0.770 -0.054 0.873 sum -21.036 2.218 0.358 21.155 Atomic orbital electron populations 1.23828 0.89838 1.08981 1.07057 1.85583 1.11841 1.00606 1.92909 1.22323 0.94510 1.00133 1.13158 1.21855 0.99308 0.92142 0.95789 1.22345 0.97322 0.97293 1.02754 1.23222 0.89394 0.98965 0.94006 1.67661 1.39276 1.00148 1.15954 1.18499 0.85952 0.88081 0.95728 1.44045 1.04776 1.09499 1.72212 1.22030 0.83267 0.91085 0.73671 1.90603 1.83009 1.19715 1.45378 1.18857 0.90595 0.92383 0.97433 0.93769 1.21584 1.00977 0.99599 0.95685 1.21253 0.90749 0.93229 1.51567 0.93284 1.25604 1.02212 0.95643 0.94355 1.69950 1.28866 1.05362 1.50697 0.85488 0.79457 0.78414 0.78184 1.20553 1.19729 1.19801 0.88162 0.85324 0.88158 0.80580 0.80168 0.80785 0.73893 0.93336 0.90381 0.95757 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.17 113.37 1.04 -0.25 16 2 S -0.15 -3.29 21.10 -56.49 -1.19 -4.48 16 3 C -0.18 -5.05 6.14 22.81 0.14 -4.91 16 4 C -0.06 -1.16 9.46 22.58 0.21 -0.95 16 5 C -0.17 -3.39 10.10 22.36 0.23 -3.16 16 6 C 0.10 2.95 11.17 84.64 0.95 3.89 16 7 N -0.51 -20.76 7.87 -192.40 -1.52 -22.27 16 8 C 0.35 13.37 7.45 133.05 0.99 14.36 16 9 N -0.66 -27.10 5.24 -307.88 -1.61 -28.71 16 10 C 0.51 25.94 7.11 87.65 0.62 26.56 16 11 O -0.52 -29.79 13.71 -3.05 -0.04 -29.83 16 12 C 0.03 1.52 2.64 -12.29 -0.03 1.49 16 13 H 0.04 2.42 8.14 -2.39 -0.02 2.40 16 14 C -0.12 -5.79 8.87 71.99 0.64 -5.15 16 15 C -0.53 -31.74 8.37 25.60 0.21 -31.52 16 16 H 0.05 3.15 6.75 -2.91 -0.02 3.13 16 17 C 0.02 1.21 5.30 84.66 0.45 1.66 16 18 N -0.91 -51.85 11.32 21.45 0.24 -51.61 16 19 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 20 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 23 H 0.10 0.74 7.78 -2.39 -0.02 0.72 16 24 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 0.74 7.78 -2.39 -0.02 0.72 16 26 H 0.18 1.87 6.04 -2.91 -0.02 1.85 16 27 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 28 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.42 15.22 6.65 -92.71 -0.62 14.60 16 30 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 31 H 0.08 4.05 6.07 -2.39 -0.01 4.04 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -76.74 293.39 3.88 -72.86 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.52 Total: 14.06 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.45 Total: 2.03 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -2.88 Total: -102.59 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.04 Total: -29.83 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.19 Total: -4.48 kcal Total: -76.74 3.88 -72.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597816016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.738 kcal (2) G-P(sol) polarization free energy of solvation -76.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds