Wall clock time and date at job start Mon Mar 30 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 120.00341 * 2 1 4 4 H 1.48503 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46989 * 299.99923 * 3 2 1 6 6 H 1.48498 * 109.46986 * 59.99910 * 3 2 1 7 7 C 1.38970 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99878 * 186.77753 * 7 2 1 9 9 N 1.36983 * 120.00358 * 6.77556 * 7 2 1 10 10 C 1.34773 * 120.00344 * 221.88950 * 9 7 2 11 11 O 1.21647 * 119.99976 * 185.02502 * 10 9 7 12 12 C 1.47267 * 119.99978 * 5.02530 * 10 9 7 13 13 C 1.39276 * 123.09611 * 188.09582 * 12 10 9 14 14 N 1.29503 * 116.93519 * 179.97438 * 13 12 10 15 15 S 1.69487 * 107.85781 * 0.02562 * 14 13 12 16 16 C 1.37954 * 123.09515 * 7.80429 * 12 10 9 17 17 C 1.46504 * 119.99569 * 41.88872 * 9 7 2 18 18 C 1.54265 * 110.03258 * 112.14243 * 17 9 7 19 19 C 1.54967 * 104.15974 * 95.75494 * 18 17 9 20 20 C 1.54889 * 102.77762 * 37.88722 * 19 18 17 21 21 C 1.53880 * 110.03293 * 229.35970 * 17 9 7 22 22 H 0.97002 * 119.99388 * 4.99042 * 1 2 3 23 23 H 1.08001 * 121.53543 * 0.02639 * 13 12 10 24 24 H 1.07994 * 127.31981 * 0.02562 * 16 12 10 25 25 H 1.09004 * 110.02008 * 350.75257 * 17 9 7 26 26 H 1.09001 * 110.48889 * 214.40186 * 18 17 9 27 27 H 1.09004 * 110.48800 * 337.04517 * 18 17 9 28 28 H 1.09008 * 110.71851 * 279.57250 * 19 18 17 29 29 H 1.09003 * 110.92403 * 156.30050 * 19 18 17 30 30 H 1.09003 * 110.48666 * 203.40580 * 20 19 18 31 31 H 1.08999 * 110.59756 * 80.81922 * 20 19 18 32 32 H 1.09000 * 110.02831 * 359.95174 * 21 17 9 33 33 H 1.08997 * 110.03042 * 121.38353 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7083 1.3462 0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2036 0.0005 8 1 3.0833 -1.2069 0.1109 9 7 1.3312 -2.3858 -0.1389 10 6 1.6679 -3.4490 0.6178 11 8 1.1291 -4.5235 0.4312 12 6 2.6882 -3.3099 1.6707 13 6 3.2033 -4.3932 2.3783 14 7 4.0971 -4.1340 3.2789 15 16 4.3517 -2.4584 3.2915 16 6 3.2259 -2.0952 2.0428 17 6 0.2402 -2.4944 -1.1107 18 6 0.6451 -3.4458 -2.2555 19 6 0.0473 -4.8140 -1.8407 20 6 -1.3084 -4.4171 -1.2053 21 6 -1.0011 -3.1118 -0.4428 22 1 -0.4849 0.8369 -0.0731 23 1 2.8733 -5.4031 2.1844 24 1 2.9887 -1.1225 1.6377 25 1 -0.0021 -1.5100 -1.5113 26 1 0.2142 -3.1118 -3.1995 27 1 1.7305 -3.5102 -2.3322 28 1 0.6868 -5.3084 -1.1094 29 1 -0.1060 -5.4518 -2.7113 30 1 -1.6477 -5.1906 -0.5163 31 1 -2.0568 -4.2405 -1.9778 32 1 -0.7914 -3.3314 0.6040 33 1 -1.8456 -2.4270 -0.5193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687183874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:18 Heat of formation + Delta-G solvation = 23.816368 kcal Electronic energy + Delta-G solvation = -18884.645160 eV Core-core repulsion = 16037.779580 eV Total energy + Delta-G solvation = -2846.865580 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.65746 -37.71533 -35.51353 -34.70630 -31.71598 -30.45179 -27.75738 -26.95681 -25.58001 -24.17597 -21.63402 -19.75369 -19.61835 -18.74354 -17.84570 -16.51379 -15.76055 -14.87161 -14.71619 -14.56438 -14.20812 -13.73963 -13.49534 -13.12547 -12.75542 -12.52552 -12.10185 -11.51973 -11.41699 -11.30811 -10.83145 -10.73468 -10.47467 -10.23545 -10.19044 -10.12909 -10.04237 -9.87721 -9.67957 -9.09073 -8.95965 -8.35016 -8.11520 -7.55316 -6.58146 -4.35856 1.24878 2.12289 2.40040 2.65419 2.97372 3.05693 3.07308 3.85439 4.29587 4.64123 4.82436 5.48954 5.60578 5.66595 5.76891 5.92756 6.11975 6.28598 6.31268 6.51676 6.56761 6.59193 6.62207 6.69861 6.77756 6.85167 6.90044 7.08412 7.18059 7.28731 7.41761 7.43283 7.78716 8.20970 8.81249 9.36815 9.80943 10.39415 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.011139 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.427574 B = 2513.035996 C = 4122.456784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.046 3.954 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.344 4.344 8 H 0.100 0.900 9 N -0.422 5.422 10 C 0.532 3.468 11 O -0.585 6.585 12 C -0.198 4.198 13 C 0.133 3.867 14 N -0.483 5.483 15 S 0.182 5.818 16 C -0.147 4.147 17 C 0.159 3.841 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.105 4.105 22 H 0.274 0.726 23 H 0.185 0.815 24 H 0.228 0.772 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -0.540 -0.367 2.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.163 4.163 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.473 4.473 8 H 0.117 0.883 9 N -0.139 5.139 10 C 0.320 3.680 11 O -0.472 6.472 12 C -0.217 4.217 13 C -0.067 4.067 14 N -0.301 5.301 15 S 0.334 5.666 16 C -0.295 4.295 17 C 0.055 3.945 18 C -0.171 4.171 19 C -0.168 4.168 20 C -0.149 4.149 21 C -0.143 4.143 22 H 0.085 0.915 23 H 0.201 0.799 24 H 0.243 0.757 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.378 -0.829 1.208 3.682 hybrid contribution -1.021 0.838 -1.407 1.930 sum 2.357 0.009 -0.199 2.365 Atomic orbital electron populations 1.69887 1.06026 1.28393 1.43667 1.25547 0.95531 0.99786 0.95449 0.86165 0.80120 0.81799 0.78701 1.18649 1.19975 1.20054 1.19736 0.92133 0.83375 1.52035 0.88254 1.43423 1.30183 1.09552 1.30713 1.17522 0.83506 0.85359 0.81609 1.90475 1.57887 1.27839 1.71003 1.20749 1.04644 0.91632 1.04663 1.22845 0.91719 1.01453 0.90644 1.76461 1.22099 1.07261 1.24255 1.83853 1.41587 1.04673 1.36496 1.29495 0.97214 1.05534 0.97293 1.21523 0.86044 0.99274 0.87688 1.22773 1.00093 0.96476 0.97768 1.22911 0.97726 0.96680 0.99472 1.22167 0.96812 0.97670 0.98206 1.22143 0.97121 0.94736 1.00295 0.91531 0.79866 0.75655 0.87670 0.92956 0.92470 0.87197 0.94750 0.92983 0.93817 0.91603 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.01 11.27 55.50 0.63 -19.39 16 2 C 0.05 1.02 5.09 -17.46 -0.09 0.93 16 3 Si 0.91 17.19 29.52 -169.99 -5.02 12.18 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.34 -7.74 6.30 -14.98 -0.09 -7.84 16 8 H 0.10 2.15 5.64 -52.48 -0.30 1.85 16 9 N -0.42 -9.72 2.44 -107.79 -0.26 -9.98 16 10 C 0.53 12.13 6.65 -12.59 -0.08 12.05 16 11 O -0.58 -13.66 10.92 5.24 0.06 -13.61 16 12 C -0.20 -4.08 5.79 -105.95 -0.61 -4.70 16 13 C 0.13 2.53 10.88 -18.15 -0.20 2.34 16 14 N -0.48 -9.02 12.02 29.38 0.35 -8.67 16 15 S 0.18 3.10 23.69 -107.50 -2.55 0.55 16 16 C -0.15 -2.81 9.31 30.63 0.29 -2.53 16 17 C 0.16 3.50 2.56 -66.81 -0.17 3.33 16 18 C -0.13 -2.64 6.23 -25.03 -0.16 -2.80 16 19 C -0.13 -2.52 6.25 -24.70 -0.15 -2.67 16 20 C -0.11 -2.09 6.60 -25.07 -0.17 -2.26 16 21 C -0.10 -2.24 5.85 -25.61 -0.15 -2.39 16 22 H 0.27 6.15 8.32 -40.82 -0.34 5.81 16 23 H 0.18 3.21 7.94 -52.49 -0.42 2.80 16 24 H 0.23 4.40 4.58 -52.49 -0.24 4.16 16 25 H 0.11 2.49 5.98 -51.93 -0.31 2.18 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 28 H 0.11 2.36 5.02 -52.08 -0.26 2.09 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.57 6.47 -51.93 -0.34 1.23 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 275.38 15.07 4.15 4.15 Total: -1.00 -24.61 275.38 -7.76 -32.37 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -3.53 Total: 8.93 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.59 Total: -6.53 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.72 Total: -38.04 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.06 Total: -13.61 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.02 Total: 12.18 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.55 Total: 0.55 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -24.61 -7.76 -32.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.184 kcal (2) G-P(sol) polarization free energy of solvation -24.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds