Wall clock time and date at job start Mon Mar 30 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 120.00341 * 2 1 4 4 H 1.48503 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46989 * 299.99923 * 3 2 1 6 6 H 1.48498 * 109.46986 * 59.99910 * 3 2 1 7 7 C 1.38970 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99878 * 186.77753 * 7 2 1 9 9 N 1.36983 * 120.00358 * 6.77556 * 7 2 1 10 10 C 1.34773 * 120.00344 * 221.88950 * 9 7 2 11 11 O 1.21647 * 119.99976 * 185.02502 * 10 9 7 12 12 C 1.47267 * 119.99978 * 5.02530 * 10 9 7 13 13 C 1.39276 * 123.09611 * 188.09582 * 12 10 9 14 14 N 1.29503 * 116.93519 * 179.97438 * 13 12 10 15 15 S 1.69487 * 107.85781 * 0.02562 * 14 13 12 16 16 C 1.37954 * 123.09515 * 7.80429 * 12 10 9 17 17 C 1.46504 * 119.99569 * 41.88872 * 9 7 2 18 18 C 1.54265 * 110.03258 * 112.14243 * 17 9 7 19 19 C 1.54967 * 104.15974 * 95.75494 * 18 17 9 20 20 C 1.54889 * 102.77762 * 37.88722 * 19 18 17 21 21 C 1.53880 * 110.03293 * 229.35970 * 17 9 7 22 22 H 0.97002 * 119.99388 * 4.99042 * 1 2 3 23 23 H 1.08001 * 121.53543 * 0.02639 * 13 12 10 24 24 H 1.07994 * 127.31981 * 0.02562 * 16 12 10 25 25 H 1.09004 * 110.02008 * 350.75257 * 17 9 7 26 26 H 1.09001 * 110.48889 * 214.40186 * 18 17 9 27 27 H 1.09004 * 110.48800 * 337.04517 * 18 17 9 28 28 H 1.09008 * 110.71851 * 279.57250 * 19 18 17 29 29 H 1.09003 * 110.92403 * 156.30050 * 19 18 17 30 30 H 1.09003 * 110.48666 * 203.40580 * 20 19 18 31 31 H 1.08999 * 110.59756 * 80.81922 * 20 19 18 32 32 H 1.09000 * 110.02831 * 359.95174 * 21 17 9 33 33 H 1.08997 * 110.03042 * 121.38353 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7083 1.3462 0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2036 0.0005 8 1 3.0833 -1.2069 0.1109 9 7 1.3312 -2.3858 -0.1389 10 6 1.6679 -3.4490 0.6178 11 8 1.1291 -4.5235 0.4312 12 6 2.6882 -3.3099 1.6707 13 6 3.2033 -4.3932 2.3783 14 7 4.0971 -4.1340 3.2789 15 16 4.3517 -2.4584 3.2915 16 6 3.2259 -2.0952 2.0428 17 6 0.2402 -2.4944 -1.1107 18 6 0.6451 -3.4458 -2.2555 19 6 0.0473 -4.8140 -1.8407 20 6 -1.3084 -4.4171 -1.2053 21 6 -1.0011 -3.1118 -0.4428 22 1 -0.4849 0.8369 -0.0731 23 1 2.8733 -5.4031 2.1844 24 1 2.9887 -1.1225 1.6377 25 1 -0.0021 -1.5100 -1.5113 26 1 0.2142 -3.1118 -3.1995 27 1 1.7305 -3.5102 -2.3322 28 1 0.6868 -5.3084 -1.1094 29 1 -0.1060 -5.4518 -2.7113 30 1 -1.6477 -5.1906 -0.5163 31 1 -2.0568 -4.2405 -1.9778 32 1 -0.7914 -3.3314 0.6040 33 1 -1.8456 -2.4270 -0.5193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687183874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:18 Heat of formation + Delta-G solvation = 11.641842 kcal Electronic energy + Delta-G solvation = -18885.173087 eV Core-core repulsion = 16037.779580 eV Total energy + Delta-G solvation = -2847.393507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32688 -39.26724 -37.18770 -36.38586 -33.43095 -32.01158 -29.39018 -28.59771 -27.25937 -25.76554 -23.26988 -21.34452 -21.18940 -20.44931 -19.46945 -18.04891 -17.43877 -16.50711 -16.36901 -16.13525 -15.87021 -15.31910 -15.09040 -14.69481 -14.37381 -14.09616 -13.71134 -13.17139 -13.05840 -12.85868 -12.41416 -12.28303 -12.01878 -11.77688 -11.75889 -11.72610 -11.66469 -11.54361 -11.26024 -10.76076 -10.50787 -10.04630 -9.59468 -9.27403 -8.27936 -6.11680 -0.27941 0.64035 0.92980 1.08041 1.46979 1.50467 1.60226 2.26697 2.60413 2.98595 3.12375 3.98030 3.99435 4.05596 4.18044 4.39387 4.52670 4.70760 4.81472 4.89926 4.95980 4.99345 5.02459 5.07543 5.12147 5.25948 5.31288 5.36948 5.56775 5.66041 5.72957 5.83784 6.08018 6.48489 7.08933 7.64449 8.08134 8.70543 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.011139 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.427574 B = 2513.035996 C = 4122.456784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.011 3.989 3 Si 0.968 3.032 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.355 4.355 8 H 0.107 0.893 9 N -0.433 5.433 10 C 0.520 3.480 11 O -0.598 6.598 12 C -0.221 4.221 13 C 0.133 3.867 14 N -0.496 5.496 15 S 0.256 5.744 16 C -0.153 4.153 17 C 0.153 3.847 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.103 4.103 21 C -0.099 4.099 22 H 0.274 0.726 23 H 0.193 0.807 24 H 0.224 0.776 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -0.285 -0.374 3.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.172 1.172 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.484 4.484 8 H 0.124 0.876 9 N -0.150 5.150 10 C 0.309 3.691 11 O -0.486 6.486 12 C -0.240 4.240 13 C -0.066 4.066 14 N -0.315 5.315 15 S 0.408 5.592 16 C -0.302 4.302 17 C 0.050 3.950 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.141 4.141 21 C -0.137 4.137 22 H 0.084 0.916 23 H 0.209 0.791 24 H 0.240 0.760 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.391 -0.580 1.202 4.589 hybrid contribution -1.277 0.763 -1.323 1.990 sum 3.114 0.182 -0.121 3.122 Atomic orbital electron populations 1.69995 1.07402 1.29017 1.44909 1.26232 0.96038 1.02348 0.94843 0.85242 0.79708 0.77897 0.78104 1.17153 1.20412 1.20267 1.20002 0.92565 0.83516 1.52316 0.87564 1.43588 1.30411 1.09873 1.31102 1.17870 0.84016 0.85213 0.81989 1.90466 1.58519 1.28167 1.71466 1.20741 1.05325 0.92844 1.05122 1.22817 0.91714 1.01532 0.90503 1.76359 1.22041 1.08900 1.24180 1.83576 1.39068 1.02832 1.33735 1.29386 0.97585 1.05060 0.98175 1.21539 0.86316 0.98810 0.88381 1.22726 0.99500 0.96496 0.97822 1.22797 0.97182 0.96350 0.99892 1.22135 0.97356 0.96094 0.98524 1.22046 0.96833 0.96074 0.98748 0.91603 0.79077 0.75998 0.89566 0.90960 0.93629 0.89460 0.92036 0.92816 0.91343 0.94718 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.24 11.27 21.67 0.24 -42.00 16 2 C 0.01 0.49 5.09 84.93 0.43 0.93 16 3 Si 0.97 34.77 29.52 68.60 2.03 36.80 16 4 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 5 H -0.28 -10.15 7.11 99.48 0.71 -9.45 16 6 H -0.28 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.36 -16.07 6.30 84.06 0.53 -15.54 16 8 H 0.11 4.54 5.64 -2.91 -0.02 4.52 16 9 N -0.43 -20.24 2.44 -613.17 -1.50 -21.73 16 10 C 0.52 24.08 6.65 86.62 0.58 24.65 16 11 O -0.60 -28.41 10.92 -4.18 -0.05 -28.46 16 12 C -0.22 -9.06 5.79 -20.72 -0.12 -9.18 16 13 C 0.13 4.96 10.88 85.29 0.93 5.89 16 14 N -0.50 -17.63 12.02 -60.97 -0.73 -18.36 16 15 S 0.26 8.07 23.69 -56.49 -1.34 6.74 16 16 C -0.15 -5.70 9.31 67.75 0.63 -5.07 16 17 C 0.15 6.87 2.56 45.72 0.12 6.99 16 18 C -0.13 -4.99 6.23 31.70 0.20 -4.79 16 19 C -0.13 -4.66 6.25 31.91 0.20 -4.46 16 20 C -0.10 -3.80 6.60 31.67 0.21 -3.59 16 21 C -0.10 -4.29 5.85 31.32 0.18 -4.11 16 22 H 0.27 12.50 8.32 -92.71 -0.77 11.73 16 23 H 0.19 6.63 7.94 -2.91 -0.02 6.61 16 24 H 0.22 8.47 4.58 -2.91 -0.01 8.46 16 25 H 0.09 4.17 5.98 -2.38 -0.01 4.15 16 26 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.04 1.87 8.04 -2.38 -0.02 1.85 16 28 H 0.09 3.72 5.02 -4.85 -0.02 3.70 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.03 1.69 6.47 -2.39 -0.02 1.68 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -52.06 275.38 3.67 -48.39 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 1.13 Total: 26.92 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 3.88 Total: -8.30 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.98 Total: -82.10 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.05 Total: -28.46 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Atomic # 16 Polarization: 8.07 SS G_CDS: -1.34 Total: 6.74 kcal Total: -52.06 3.67 -48.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.035 kcal (2) G-P(sol) polarization free energy of solvation -52.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds