Wall clock time and date at job start Mon Mar 30 2020 08:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48501 * 109.47441 * 239.99648 * 3 2 1 5 5 H 1.48502 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46917 * 120.00197 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09011 * 110.27033 * 302.09207 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.50694 * 109.47194 * 52.66331 * 14 13 12 16 16 C 1.38232 * 120.41499 * 269.72427 * 15 14 13 17 17 N 1.31854 * 120.79265 * 179.72859 * 16 15 14 18 18 C 1.31875 * 121.74064 * 0.58674 * 17 16 15 19 19 C 1.38310 * 120.74282 * 359.67163 * 18 17 16 20 20 Cl 1.73605 * 120.42978 * 180.02562 * 19 18 17 21 21 C 1.38610 * 120.41102 * 89.99945 * 15 14 13 22 22 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 23 23 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 25 25 H 1.08999 * 110.72080 * 22.51964 * 11 9 7 26 26 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 27 27 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 28 28 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 29 29 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 30 30 H 1.07997 * 119.60221 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.62857 * 179.70767 * 18 17 16 32 32 H 1.08001 * 120.79221 * 359.95742 * 21 15 14 33 33 H 1.09002 * 109.91668 * 215.45268 * 22 13 12 34 34 H 1.09002 * 109.91761 * 94.35443 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 1.7406 -6.6385 -2.2545 16 6 0.4337 -7.0809 -2.3378 17 7 0.0107 -7.7405 -3.3983 18 6 0.8110 -8.0138 -4.4102 19 6 2.1331 -7.6077 -4.3956 20 17 3.1793 -7.9714 -5.7324 21 6 2.6124 -6.9059 -3.2985 22 6 2.2345 -3.6841 -0.0020 23 1 -0.4851 0.8401 -0.0004 24 1 -0.6104 -2.4039 -1.1404 25 1 0.8593 -2.0254 -2.0975 26 1 -0.0910 -4.7560 -1.0663 27 1 0.4615 -4.3210 -2.7164 28 1 3.2736 -6.0760 -0.8805 29 1 1.6477 -6.2035 -0.1673 30 1 -0.2501 -6.8806 -1.5263 31 1 0.4297 -8.5604 -5.2600 32 1 3.6399 -6.5757 -3.2591 33 1 3.2599 -3.3156 0.0284 34 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703668222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:46 Heat of formation + Delta-G solvation = 28.637620 kcal Electronic energy + Delta-G solvation = -17551.552295 eV Core-core repulsion = 14702.852073 eV Total energy + Delta-G solvation = -2848.700222 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -40.48003 -38.04915 -36.77815 -34.04224 -32.50683 -31.57810 -29.76865 -28.26864 -25.87865 -24.03687 -23.81640 -22.11366 -20.09202 -19.43557 -17.26550 -16.86958 -16.47899 -16.03060 -15.27165 -14.52524 -14.39289 -14.08573 -13.66382 -13.34883 -13.27754 -12.58944 -12.30006 -12.17297 -11.87822 -11.54961 -11.28526 -11.13619 -10.95059 -10.69376 -10.64422 -10.27877 -9.83632 -9.69671 -9.66204 -9.32832 -9.00087 -8.81479 -8.40580 -7.83470 -6.02298 -4.04425 0.78574 1.03926 1.85331 3.32631 3.37286 3.40045 3.51663 4.26620 4.43805 4.55343 4.60894 4.67167 4.83221 5.00904 5.27291 5.32424 5.52107 5.68735 5.76102 5.79093 5.97963 6.08529 6.17949 6.21588 6.36812 6.49853 6.81120 7.07368 7.13218 7.36520 7.59460 7.65958 7.70279 7.86769 7.98877 8.41580 8.96595 9.59199 11.07735 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.004089 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.926059 B = 6846.793322 C = 7143.576799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.031 0.969 11 C -0.091 4.091 12 C 0.029 3.971 13 N -0.510 5.510 14 C 0.085 3.915 15 C -0.106 4.106 16 C 0.109 3.891 17 N -0.469 5.469 18 C 0.104 3.896 19 C -0.089 4.089 20 Cl -0.061 7.061 21 C -0.049 4.049 22 C 0.044 3.956 23 H 0.260 0.740 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 -15.724 -6.479 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.049 0.951 11 C -0.130 4.130 12 C -0.098 4.098 13 N -0.235 5.235 14 C -0.044 4.044 15 C -0.109 4.109 16 C -0.048 4.048 17 N -0.177 5.177 18 C -0.054 4.054 19 C -0.118 4.118 20 Cl -0.032 7.032 21 C -0.076 4.076 22 C -0.083 4.083 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.177 0.823 31 H 0.179 0.821 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.601 -15.750 -7.019 17.438 hybrid contribution 0.862 0.936 0.471 1.357 sum 3.463 -14.814 -6.548 16.562 Atomic orbital electron populations 1.69952 1.05901 1.26633 1.50469 1.24972 0.94845 0.99063 0.95112 0.86677 0.79604 0.83206 0.78619 1.20247 1.21386 1.20321 1.21128 0.92694 0.90157 1.50794 0.92508 1.19493 0.92455 0.91874 0.94007 0.95072 1.22406 1.00366 0.90375 0.99856 1.23435 0.87990 0.99554 0.98839 1.65019 1.23867 1.03504 1.31073 1.21223 1.01354 0.89575 0.92216 1.20923 0.94466 0.98211 0.97251 1.22881 0.93615 0.92648 0.95702 1.67843 1.36439 1.12688 1.00714 1.22734 0.88122 0.97257 0.97287 1.22096 0.93553 1.04118 0.92033 1.98375 1.66252 1.93444 1.45153 1.21452 1.01244 0.94103 0.90801 1.23146 1.02146 0.95481 0.87518 0.93008 0.92171 0.91997 0.95083 0.92143 0.89819 0.93530 0.82277 0.82116 0.83572 0.90854 0.95892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 12.63 55.43 0.70 -24.60 16 2 C 0.06 1.69 5.34 -17.82 -0.10 1.59 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.72 8.37 -34.44 -0.29 -14.00 16 8 H 0.06 1.51 7.34 -52.48 -0.39 1.13 16 9 C 0.04 0.98 2.87 -90.42 -0.26 0.72 16 10 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 11 C -0.09 -2.09 5.75 -24.87 -0.14 -2.24 16 12 C 0.03 0.54 5.00 -1.74 -0.01 0.53 16 13 N -0.51 -9.15 5.40 -231.64 -1.25 -10.40 16 14 C 0.08 1.18 5.21 -4.98 -0.03 1.15 16 15 C -0.11 -1.38 4.61 -104.49 -0.48 -1.86 16 16 C 0.11 1.42 9.56 -17.54 -0.17 1.25 16 17 N -0.47 -6.22 10.36 -13.22 -0.14 -6.36 16 18 C 0.10 1.21 10.99 -17.51 -0.19 1.02 16 19 C -0.09 -1.03 6.34 -39.35 -0.25 -1.28 16 20 Cl -0.06 -0.63 28.99 -51.86 -1.50 -2.13 16 21 C -0.05 -0.60 9.67 -39.24 -0.38 -0.98 16 22 C 0.04 0.88 6.34 -2.75 -0.02 0.86 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.06 1.44 8.12 -51.93 -0.42 1.02 16 25 H 0.06 1.55 7.86 -51.93 -0.41 1.14 16 26 H 0.03 0.53 7.14 -51.93 -0.37 0.16 16 27 H 0.06 1.10 7.77 -51.93 -0.40 0.70 16 28 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.05 0.61 7.76 -51.92 -0.40 0.21 16 30 H 0.16 1.88 7.43 -52.49 -0.39 1.49 16 31 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.07 1.51 7.39 -51.93 -0.38 1.13 16 34 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -28.28 297.32 -9.42 -37.70 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.38 Total: -1.60 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.31 Total: -13.22 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.69 Total: -41.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.28 -9.42 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703668222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.340 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds