Wall clock time and date at job start Mon Mar 30 2020 08:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48501 * 109.47441 * 239.99648 * 3 2 1 5 5 H 1.48502 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46917 * 120.00197 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09011 * 110.27033 * 302.09207 * 9 7 2 11 11 C 1.54594 * 110.30989 * 64.28222 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.87684 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.50694 * 109.47194 * 52.66331 * 14 13 12 16 16 C 1.38232 * 120.41499 * 269.72427 * 15 14 13 17 17 N 1.31854 * 120.79265 * 179.72859 * 16 15 14 18 18 C 1.31875 * 121.74064 * 0.58674 * 17 16 15 19 19 C 1.38310 * 120.74282 * 359.67163 * 18 17 16 20 20 Cl 1.73605 * 120.42978 * 180.02562 * 19 18 17 21 21 C 1.38610 * 120.41102 * 89.99945 * 15 14 13 22 22 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 23 23 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.72754 * 259.23584 * 11 9 7 25 25 H 1.08999 * 110.72080 * 22.51964 * 11 9 7 26 26 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 27 27 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 28 28 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 29 29 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 30 30 H 1.07997 * 119.60221 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.62857 * 179.70767 * 18 17 16 32 32 H 1.08001 * 120.79221 * 359.95742 * 21 15 14 33 33 H 1.09002 * 109.91668 * 215.45268 * 22 13 12 34 34 H 1.09002 * 109.91761 * 94.35443 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4384 -2.6484 -1.3083 12 6 0.6034 -4.1508 -1.6491 13 7 2.0080 -4.4410 -1.2524 14 6 2.2135 -5.8801 -1.0412 15 6 1.7406 -6.6385 -2.2545 16 6 0.4337 -7.0809 -2.3378 17 7 0.0107 -7.7405 -3.3983 18 6 0.8110 -8.0138 -4.4102 19 6 2.1331 -7.6077 -4.3956 20 17 3.1793 -7.9714 -5.7324 21 6 2.6124 -6.9059 -3.2985 22 6 2.2345 -3.6841 -0.0020 23 1 -0.4851 0.8401 -0.0004 24 1 -0.6104 -2.4039 -1.1404 25 1 0.8593 -2.0254 -2.0975 26 1 -0.0910 -4.7560 -1.0663 27 1 0.4615 -4.3210 -2.7164 28 1 3.2736 -6.0760 -0.8805 29 1 1.6477 -6.2035 -0.1673 30 1 -0.2501 -6.8806 -1.5263 31 1 0.4297 -8.5604 -5.2600 32 1 3.6399 -6.5757 -3.2591 33 1 3.2599 -3.3156 0.0284 34 1 2.0446 -4.3245 0.8594 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703668222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:43 Heat of formation + Delta-G solvation = 11.477140 kcal Electronic energy + Delta-G solvation = -17552.296429 eV Core-core repulsion = 14702.852073 eV Total energy + Delta-G solvation = -2849.444356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.45900 -39.54194 -37.64249 -35.56541 -34.04087 -32.69153 -31.20597 -29.98195 -27.26299 -25.80904 -24.78223 -23.24082 -21.54100 -21.25470 -18.57208 -18.17713 -17.76194 -17.15441 -16.64940 -16.35387 -15.87220 -15.18019 -14.92493 -14.56017 -14.31840 -14.18436 -13.79114 -13.36916 -13.05519 -12.98194 -12.92927 -12.64457 -12.45503 -12.41730 -12.20070 -11.94071 -11.60044 -11.22953 -10.83323 -10.72954 -10.59494 -10.48450 -9.92826 -9.23604 -8.11579 -6.19793 -0.14304 0.09937 0.98274 1.43154 1.44372 1.51636 2.44925 2.55316 3.19497 3.28715 3.37693 3.59798 3.73674 3.89474 4.00528 4.13385 4.24099 4.40405 4.53382 4.54376 4.65819 4.73776 4.85511 4.89519 5.04948 5.13399 5.25446 5.34790 5.44271 5.56100 5.71954 5.86161 6.13244 6.23534 6.39469 6.77427 6.88890 7.47046 8.97713 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.004089 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.926059 B = 6846.793322 C = 7143.576799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.030 3.970 10 H 0.004 0.996 11 C -0.085 4.085 12 C 0.048 3.952 13 N -0.518 5.518 14 C 0.088 3.912 15 C -0.115 4.115 16 C 0.103 3.897 17 N -0.487 5.487 18 C 0.104 3.896 19 C -0.092 4.092 20 Cl -0.049 7.049 21 C -0.051 4.051 22 C 0.056 3.944 23 H 0.260 0.740 24 H 0.038 0.962 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.167 0.833 31 H 0.184 0.816 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 -16.908 -7.021 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.011 3.989 10 H 0.022 0.978 11 C -0.124 4.124 12 C -0.080 4.080 13 N -0.243 5.243 14 C -0.040 4.040 15 C -0.117 4.117 16 C -0.054 4.054 17 N -0.195 5.195 18 C -0.053 4.053 19 C -0.121 4.121 20 Cl -0.020 7.020 21 C -0.078 4.078 22 C -0.071 4.071 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.184 0.816 31 H 0.201 0.799 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.640 -16.950 -7.560 18.914 hybrid contribution 0.553 1.240 0.590 1.480 sum 4.192 -15.710 -6.970 17.691 Atomic orbital electron populations 1.70076 1.07217 1.27229 1.51503 1.25732 0.95630 1.02364 0.94955 0.85704 0.78415 0.79258 0.78840 1.19867 1.21214 1.19436 1.21516 0.92893 0.91661 1.50293 0.92667 1.19488 0.93074 0.92946 0.93361 0.97804 1.22162 0.98514 0.93330 0.98408 1.23201 0.89076 0.96249 0.99443 1.64928 1.23112 1.06244 1.30010 1.21266 1.02753 0.86778 0.93204 1.20814 0.94698 0.98938 0.97288 1.23038 0.93814 0.92603 0.95966 1.67876 1.37092 1.13323 1.01248 1.23129 0.88107 0.96672 0.97425 1.22137 0.93801 1.03861 0.92271 1.98382 1.65856 1.93321 1.44463 1.21631 1.01683 0.93798 0.90711 1.22866 1.00354 0.94508 0.89366 0.93166 0.94283 0.94881 0.93333 0.91572 0.88115 0.92279 0.81569 0.79926 0.82609 0.91467 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 12.63 21.45 0.27 -53.21 16 2 C 0.01 0.65 5.34 84.65 0.45 1.11 16 3 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.53 -28.67 8.37 25.60 0.21 -28.46 16 8 H 0.06 2.95 7.34 -2.91 -0.02 2.93 16 9 C 0.03 1.49 2.87 -10.66 -0.03 1.46 16 10 H 0.00 0.20 8.14 -2.38 -0.02 0.19 16 11 C -0.09 -3.99 5.75 31.80 0.18 -3.81 16 12 C 0.05 1.73 5.00 86.59 0.43 2.16 16 13 N -0.52 -17.71 5.40 -886.79 -4.78 -22.49 16 14 C 0.09 2.21 5.21 85.56 0.45 2.65 16 15 C -0.11 -2.72 4.61 -19.78 -0.09 -2.81 16 16 C 0.10 2.46 9.56 84.69 0.81 3.27 16 17 N -0.49 -11.98 10.36 -195.75 -2.03 -14.01 16 18 C 0.10 2.20 10.99 84.70 0.93 3.13 16 19 C -0.09 -1.92 6.34 22.42 0.14 -1.77 16 20 Cl -0.05 -0.90 28.99 -2.72 -0.08 -0.98 16 21 C -0.05 -1.13 9.67 22.49 0.22 -0.92 16 22 C 0.06 2.20 6.34 86.44 0.55 2.75 16 23 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 24 H 0.04 1.94 8.12 -2.39 -0.02 1.92 16 25 H 0.03 1.69 7.86 -2.39 -0.02 1.67 16 26 H 0.05 1.59 7.14 -2.39 -0.02 1.57 16 27 H 0.07 2.33 7.77 -2.38 -0.02 2.31 16 28 H 0.10 2.21 8.10 -2.39 -0.02 2.19 16 29 H 0.06 1.37 7.76 -2.38 -0.02 1.35 16 30 H 0.17 3.60 7.43 -2.91 -0.02 3.58 16 31 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.07 2.70 7.39 -2.39 -0.02 2.68 16 34 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 Total: -1.00 -60.63 297.32 0.75 -59.88 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.09 Total: 6.38 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 4.25 Total: -21.25 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -6.54 Total: -89.71 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -60.63 0.75 -59.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703668222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.356 kcal (2) G-P(sol) polarization free energy of solvation -60.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds