Wall clock time and date at job start Mon Mar 30 2020 08:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.64720 * 61.69646 * 9 7 2 11 11 C 1.54600 * 110.72387 * 298.54353 * 9 7 2 12 12 C 1.53991 * 105.14041 * 219.69015 * 11 9 7 13 13 N 1.47900 * 107.05523 * 358.77189 * 12 11 9 14 14 C 1.46907 * 110.99721 * 145.84609 * 13 12 11 15 15 C 1.50692 * 109.47289 * 290.12839 * 14 13 12 16 16 C 1.38235 * 119.60554 * 94.99594 * 15 14 13 17 17 C 1.38609 * 119.17870 * 179.97438 * 16 15 14 18 18 C 1.38786 * 118.40610 * 0.02562 * 17 16 15 19 19 Cl 1.73597 * 120.42793 * 180.02562 * 18 17 16 20 20 C 1.38303 * 119.13836 * 359.97438 * 18 17 16 21 21 N 1.31849 * 119.60168 * 274.72887 * 15 14 13 22 22 C 1.48530 * 105.82377 * 25.33817 * 13 12 11 23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.30636 * 338.60376 * 11 9 7 25 25 H 1.09004 * 110.30578 * 100.76835 * 11 9 7 26 26 H 1.08994 * 109.91763 * 118.13210 * 12 11 9 27 27 H 1.09005 * 109.91502 * 239.22690 * 12 11 9 28 28 H 1.09007 * 109.46847 * 50.12594 * 14 13 12 29 29 H 1.08995 * 109.47088 * 170.12028 * 14 13 12 30 30 H 1.07995 * 120.41211 * 0.02672 * 16 15 14 31 31 H 1.07994 * 120.79822 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.63077 * 179.97438 * 20 18 17 33 33 H 1.09001 * 110.66521 * 202.35739 * 22 13 12 34 34 H 1.08995 * 110.66819 * 79.22106 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8956 -0.7102 0.8992 11 6 4.0592 -0.5033 -1.2690 12 6 5.2715 -1.3509 -1.6969 13 7 5.4136 -2.4373 -0.7033 14 6 5.9032 -3.6691 -1.3366 15 6 4.8256 -4.2421 -2.2205 16 6 4.8172 -3.9410 -3.5696 17 6 3.8222 -4.4733 -4.3746 18 6 2.8672 -5.2927 -3.7892 19 17 1.5981 -5.9879 -4.7482 20 6 2.9404 -5.5490 -2.4321 21 7 3.9052 -5.0288 -1.6987 22 6 4.0599 -2.6376 -0.1258 23 1 -0.4850 0.8400 -0.0004 24 1 3.3031 -0.5011 -2.0542 25 1 4.3715 0.5157 -1.0407 26 1 5.0986 -1.7732 -2.6867 27 1 6.1703 -0.7342 -1.7082 28 1 6.7842 -3.4432 -1.9376 29 1 6.1652 -4.3943 -0.5662 30 1 5.5769 -3.2998 -3.9914 31 1 3.7909 -4.2557 -5.4319 32 1 2.2011 -6.1852 -1.9682 33 1 4.1258 -3.1115 0.8535 34 1 3.4380 -3.2275 -0.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703846699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:02 Heat of formation + Delta-G solvation = 42.460111 kcal Electronic energy + Delta-G solvation = -18201.693231 eV Core-core repulsion = 15353.592398 eV Total energy + Delta-G solvation = -2848.100833 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60348 -38.09160 -36.63262 -33.63088 -32.55455 -31.93371 -29.99650 -28.42963 -26.20746 -23.97749 -23.69346 -22.10783 -20.22454 -19.53479 -17.09078 -16.73827 -16.63392 -15.97947 -15.41840 -14.88171 -14.16133 -13.91934 -13.67681 -13.58004 -13.21216 -12.61615 -12.53773 -12.27655 -11.89371 -11.54733 -11.35160 -11.28041 -11.01712 -10.66307 -10.52417 -10.05496 -9.95384 -9.67275 -9.57559 -9.43949 -8.99035 -8.81971 -8.54896 -7.97421 -6.06353 -4.05410 0.88942 1.14151 1.98099 3.28782 3.38342 3.41477 3.63301 4.25081 4.43035 4.54863 4.65458 4.69363 4.87208 5.22971 5.24302 5.36940 5.50575 5.54393 5.68306 5.83579 5.88191 5.94981 6.02146 6.23925 6.32652 6.45581 6.65501 6.76211 6.81313 7.02898 7.28534 7.44927 7.59087 7.81547 7.90039 8.54063 8.97185 9.56303 11.06823 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.006642 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.470375 B = 4214.690728 C = 5045.536797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.263 1.263 6 H -0.293 1.293 7 C -0.509 4.509 8 H 0.072 0.928 9 C 0.015 3.985 10 H 0.038 0.962 11 C -0.141 4.141 12 C 0.031 3.969 13 N -0.507 5.507 14 C 0.093 3.907 15 C 0.106 3.894 16 C -0.154 4.154 17 C -0.066 4.066 18 C -0.091 4.091 19 Cl -0.061 7.061 20 C 0.119 3.881 21 N -0.449 5.449 22 C 0.046 3.954 23 H 0.263 0.737 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.070 0.930 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.250 -9.373 -9.344 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.220 1.220 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.005 4.005 10 H 0.056 0.944 11 C -0.179 4.179 12 C -0.097 4.097 13 N -0.229 5.229 14 C -0.036 4.036 15 C -0.033 4.033 16 C -0.175 4.175 17 C -0.093 4.093 18 C -0.120 4.120 19 Cl -0.032 7.032 20 C -0.039 4.039 21 N -0.158 5.158 22 C -0.080 4.080 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.088 0.912 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.421 -9.352 -8.111 16.182 hybrid contribution -0.535 0.926 -1.837 2.125 sum 9.886 -8.427 -9.948 16.361 Atomic orbital electron populations 1.69908 1.06276 1.26873 1.50920 1.24978 0.94629 0.98957 0.94421 0.86920 0.80226 0.83696 0.78373 1.20473 1.18760 1.22034 1.20949 0.88489 0.94436 1.50836 0.90947 1.20070 0.96292 0.91062 0.93074 0.94404 1.22896 0.95734 0.98009 1.01264 1.22949 0.99127 0.93739 0.93886 1.65179 1.26974 1.03455 1.27314 1.21455 0.93396 0.92912 0.95866 1.22352 0.95828 0.92517 0.92558 1.22022 0.99996 1.01120 0.94322 1.21479 0.92607 0.94197 1.01004 1.22057 0.94058 1.01936 0.93944 1.98371 1.50351 1.83124 1.71399 1.22828 0.95980 0.96652 0.88439 1.67839 1.02124 1.08063 1.37822 1.23434 0.86171 0.99310 0.99117 0.92717 0.91442 0.93161 0.94223 0.91377 0.89632 0.88878 0.84122 0.83998 0.81875 0.91166 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.88 21.93 24.73 -169.99 -4.20 17.73 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.26 -6.32 6.38 56.52 0.36 -5.96 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.51 -14.45 9.00 -34.44 -0.31 -14.76 16 8 H 0.07 2.25 8.03 -52.49 -0.42 1.83 16 9 C 0.01 0.35 2.46 -89.91 -0.22 0.13 16 10 H 0.04 0.94 7.36 -51.93 -0.38 0.56 16 11 C -0.14 -3.03 4.69 -25.37 -0.12 -3.15 16 12 C 0.03 0.53 6.46 -2.76 -0.02 0.51 16 13 N -0.51 -8.90 5.54 -231.89 -1.28 -10.18 16 14 C 0.09 1.31 5.83 -4.98 -0.03 1.28 16 15 C 0.11 1.57 4.64 -82.59 -0.38 1.19 16 16 C -0.15 -1.96 8.21 -39.45 -0.32 -2.29 16 17 C -0.07 -0.82 9.98 -39.24 -0.39 -1.21 16 18 C -0.09 -1.22 6.34 -39.35 -0.25 -1.47 16 19 Cl -0.06 -0.74 28.99 -51.86 -1.50 -2.25 16 20 C 0.12 1.74 10.99 -17.50 -0.19 1.55 16 21 N -0.45 -7.24 8.37 -9.45 -0.08 -7.32 16 22 C 0.05 0.97 5.57 -1.90 -0.01 0.96 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.07 1.55 7.80 -51.93 -0.40 1.14 16 25 H 0.05 1.07 5.94 -51.93 -0.31 0.76 16 26 H 0.04 0.62 5.28 -51.93 -0.27 0.35 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.09 0.96 7.98 -51.93 -0.41 0.55 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.14 1.43 7.55 -52.49 -0.40 1.04 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.06 1.31 4.94 -51.93 -0.26 1.05 16 LS Contribution 285.55 15.07 4.30 4.30 Total: -1.00 -31.07 285.55 -8.49 -39.56 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.15 Total: 0.45 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.35 Total: -15.27 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.59 Total: -44.53 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.20 Total: 17.73 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.07 -8.49 -39.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703846699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.016 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds