Wall clock time and date at job start Mon Mar 30 2020 08:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.64720 * 61.69646 * 9 7 2 11 11 C 1.54600 * 110.72387 * 298.54353 * 9 7 2 12 12 C 1.53991 * 105.14041 * 219.69015 * 11 9 7 13 13 N 1.47900 * 107.05523 * 358.77189 * 12 11 9 14 14 C 1.46907 * 110.99721 * 145.84609 * 13 12 11 15 15 C 1.50692 * 109.47289 * 290.12839 * 14 13 12 16 16 C 1.38235 * 119.60554 * 94.99594 * 15 14 13 17 17 C 1.38609 * 119.17870 * 179.97438 * 16 15 14 18 18 C 1.38786 * 118.40610 * 0.02562 * 17 16 15 19 19 Cl 1.73597 * 120.42793 * 180.02562 * 18 17 16 20 20 C 1.38303 * 119.13836 * 359.97438 * 18 17 16 21 21 N 1.31849 * 119.60168 * 274.72887 * 15 14 13 22 22 C 1.48530 * 105.82377 * 25.33817 * 13 12 11 23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.30636 * 338.60376 * 11 9 7 25 25 H 1.09004 * 110.30578 * 100.76835 * 11 9 7 26 26 H 1.08994 * 109.91763 * 118.13210 * 12 11 9 27 27 H 1.09005 * 109.91502 * 239.22690 * 12 11 9 28 28 H 1.09007 * 109.46847 * 50.12594 * 14 13 12 29 29 H 1.08995 * 109.47088 * 170.12028 * 14 13 12 30 30 H 1.07995 * 120.41211 * 0.02672 * 16 15 14 31 31 H 1.07994 * 120.79822 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.63077 * 179.97438 * 20 18 17 33 33 H 1.09001 * 110.66521 * 202.35739 * 22 13 12 34 34 H 1.08995 * 110.66819 * 79.22106 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8956 -0.7102 0.8992 11 6 4.0592 -0.5033 -1.2690 12 6 5.2715 -1.3509 -1.6969 13 7 5.4136 -2.4373 -0.7033 14 6 5.9032 -3.6691 -1.3366 15 6 4.8256 -4.2421 -2.2205 16 6 4.8172 -3.9410 -3.5696 17 6 3.8222 -4.4733 -4.3746 18 6 2.8672 -5.2927 -3.7892 19 17 1.5981 -5.9879 -4.7482 20 6 2.9404 -5.5490 -2.4321 21 7 3.9052 -5.0288 -1.6987 22 6 4.0599 -2.6376 -0.1258 23 1 -0.4850 0.8400 -0.0004 24 1 3.3031 -0.5011 -2.0542 25 1 4.3715 0.5157 -1.0407 26 1 5.0986 -1.7732 -2.6867 27 1 6.1703 -0.7342 -1.7082 28 1 6.7842 -3.4432 -1.9376 29 1 6.1652 -4.3943 -0.5662 30 1 5.5769 -3.2998 -3.9914 31 1 3.7909 -4.2557 -5.4319 32 1 2.2011 -6.1852 -1.9682 33 1 4.1258 -3.1115 0.8535 34 1 3.4380 -3.2275 -0.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703846699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:02 Heat of formation + Delta-G solvation = 20.865595 kcal Electronic energy + Delta-G solvation = -18202.629640 eV Core-core repulsion = 15353.592398 eV Total energy + Delta-G solvation = -2849.037242 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71317 -39.51674 -37.66809 -35.37901 -33.74361 -33.54147 -31.40814 -30.02923 -27.67836 -25.65859 -24.80611 -23.33872 -21.63742 -21.33974 -18.79283 -18.11881 -17.73485 -17.19448 -16.95910 -16.35237 -15.86086 -15.27413 -15.02780 -14.78823 -14.59109 -14.33971 -13.76757 -13.63775 -13.15047 -13.14273 -12.83364 -12.52980 -12.41512 -12.31124 -12.16864 -11.76378 -11.69311 -11.35400 -11.09389 -10.78662 -10.74654 -10.62389 -9.89858 -9.33927 -8.31291 -6.35566 -0.16156 0.13150 0.96259 1.30792 1.35614 1.46422 2.33003 2.56217 3.02993 3.12016 3.36919 3.61654 3.71927 3.88798 3.98908 4.08269 4.20631 4.30907 4.52884 4.57425 4.61262 4.79748 4.83815 4.87859 4.91948 4.96058 5.06264 5.19854 5.30303 5.47349 5.58158 5.62267 5.92423 6.13542 6.32088 6.69993 6.83758 7.29948 8.85701 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.006642 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.470375 B = 4214.690728 C = 5045.536797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.946 3.054 4 H -0.261 1.261 5 H -0.245 1.245 6 H -0.294 1.294 7 C -0.514 4.514 8 H 0.024 0.976 9 C 0.007 3.993 10 H 0.030 0.970 11 C -0.139 4.139 12 C 0.037 3.963 13 N -0.506 5.506 14 C 0.093 3.907 15 C 0.086 3.914 16 C -0.149 4.149 17 C -0.068 4.068 18 C -0.097 4.097 19 Cl -0.053 7.053 20 C 0.097 3.903 21 N -0.479 5.479 22 C 0.057 3.943 23 H 0.265 0.735 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.167 0.833 33 H 0.060 0.940 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.205 -8.294 -11.068 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.169 1.169 6 H -0.221 1.221 7 C -0.552 4.552 8 H 0.043 0.957 9 C -0.012 4.012 10 H 0.048 0.952 11 C -0.178 4.178 12 C -0.090 4.090 13 N -0.228 5.228 14 C -0.035 4.035 15 C -0.052 4.052 16 C -0.169 4.169 17 C -0.094 4.094 18 C -0.126 4.126 19 Cl -0.025 7.025 20 C -0.061 4.061 21 N -0.190 5.190 22 C -0.071 4.071 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.111 0.889 30 H 0.193 0.807 31 H 0.188 0.812 32 H 0.184 0.816 33 H 0.078 0.922 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.398 -8.299 -9.845 18.583 hybrid contribution -1.536 0.453 -1.305 2.066 sum 11.862 -7.846 -11.150 18.072 Atomic orbital electron populations 1.70067 1.08297 1.28030 1.52744 1.25883 0.95398 1.03079 0.94000 0.85853 0.79314 0.78403 0.79385 1.18627 1.16904 1.22094 1.21185 0.91165 0.92663 1.50226 0.95731 1.19995 0.93226 0.93749 0.94269 0.95210 1.22749 0.97071 0.99017 0.98942 1.22979 0.98296 0.93312 0.94458 1.65122 1.24069 1.05282 1.28353 1.21603 0.94189 0.91331 0.96371 1.22566 0.95861 0.93022 0.93798 1.22381 1.00435 1.00689 0.93396 1.21881 0.91836 0.93194 1.02460 1.22176 0.94609 1.02126 0.93716 1.98371 1.50090 1.83047 1.70943 1.22978 0.96311 0.97438 0.89347 1.67757 1.03032 1.09187 1.39011 1.23133 0.88167 0.96959 0.98848 0.92570 0.93466 0.92428 0.92263 0.88153 0.85646 0.88864 0.80729 0.81152 0.81602 0.92160 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 2 C 0.01 0.79 5.46 84.65 0.46 1.25 16 3 Si 0.95 45.01 24.73 68.60 1.70 46.70 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.25 -10.89 6.38 99.48 0.63 -10.26 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 7 C -0.51 -30.23 9.00 25.60 0.23 -30.00 16 8 H 0.02 1.62 8.03 -2.91 -0.02 1.60 16 9 C 0.01 0.34 2.46 -10.33 -0.03 0.32 16 10 H 0.03 1.47 7.36 -2.39 -0.02 1.45 16 11 C -0.14 -5.68 4.69 31.47 0.15 -5.53 16 12 C 0.04 1.13 6.46 86.45 0.56 1.69 16 13 N -0.51 -16.36 5.54 -887.58 -4.91 -21.27 16 14 C 0.09 2.33 5.83 85.55 0.50 2.83 16 15 C 0.09 2.38 4.64 42.55 0.20 2.58 16 16 C -0.15 -3.29 8.21 22.36 0.18 -3.10 16 17 C -0.07 -1.50 9.98 22.49 0.22 -1.27 16 18 C -0.10 -2.53 6.34 22.42 0.14 -2.39 16 19 Cl -0.05 -1.26 28.99 -2.72 -0.08 -1.33 16 20 C 0.10 2.88 10.99 84.70 0.93 3.81 16 21 N -0.48 -15.47 8.37 -183.80 -1.54 -17.01 16 22 C 0.06 2.36 5.57 86.65 0.48 2.84 16 23 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 24 H 0.05 2.09 7.80 -2.39 -0.02 2.07 16 25 H 0.06 2.24 5.94 -2.39 -0.01 2.22 16 26 H 0.06 1.58 5.28 -2.39 -0.01 1.57 16 27 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.13 2.15 7.98 -2.38 -0.02 2.13 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.18 2.59 7.55 -2.91 -0.02 2.57 16 31 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.17 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.05 2.07 4.94 -2.39 -0.01 2.06 16 Total: -1.00 -69.94 285.55 0.53 -69.41 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.03 Total: 10.78 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 4.03 Total: -26.98 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -6.15 Total: -98.58 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.70 Total: 46.70 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.33 kcal Total: -69.94 0.53 -69.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703846699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.279 kcal (2) G-P(sol) polarization free energy of solvation -69.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds