Wall clock time and date at job start Mon Mar 30 2020 08:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48501 * 109.47369 * 270.00189 * 3 2 1 5 5 H 1.48507 * 109.47087 * 30.00125 * 3 2 1 6 6 H 1.48499 * 109.47281 * 149.99730 * 3 2 1 7 7 C 1.37875 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99583 * 359.72883 * 7 2 1 10 10 N 1.46900 * 109.47100 * 176.21146 * 9 7 2 11 11 C 1.46900 * 110.99848 * 292.84643 * 10 9 7 12 12 C 1.50698 * 109.47300 * 170.00006 * 11 10 9 13 13 C 1.38233 * 119.60789 * 95.00165 * 12 11 10 14 14 C 1.38607 * 119.17626 * 180.02562 * 13 12 11 15 15 C 1.38772 * 118.41168 * 359.97438 * 14 13 12 16 16 Cl 1.73602 * 120.43124 * 180.02562 * 15 14 13 17 17 C 1.38306 * 119.13983 * 0.02562 * 15 14 13 18 18 N 1.31858 * 119.60192 * 274.72701 * 12 11 10 19 19 C 1.46900 * 111.00300 * 168.89236 * 10 9 7 20 20 C 1.52997 * 117.49669 * 4.57343 * 19 10 9 21 21 C 1.52998 * 117.49828 * 295.91592 * 19 10 9 22 22 H 0.97004 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47019 * 296.20485 * 9 7 2 24 24 H 1.08998 * 109.47172 * 56.20950 * 9 7 2 25 25 H 1.08997 * 109.47318 * 289.99636 * 11 10 9 26 26 H 1.09010 * 109.47477 * 49.99773 * 11 10 9 27 27 H 1.08001 * 120.40477 * 359.97293 * 13 12 11 28 28 H 1.08003 * 120.78971 * 180.02562 * 14 13 12 29 29 H 1.07995 * 119.63115 * 179.97438 * 17 15 14 30 30 H 1.09000 * 115.55056 * 150.24532 * 19 10 9 31 31 H 1.09000 * 117.49861 * 0.02562 * 20 19 10 32 32 H 1.09007 * 117.49517 * 145.02177 * 20 19 10 33 33 H 1.09000 * 117.49915 * 214.98233 * 21 19 10 34 34 H 1.09002 * 117.49551 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0073 10 7 2.2026 -3.6144 -0.0850 11 6 2.8704 -3.6297 -1.3933 12 6 4.0040 -4.6224 -1.3671 13 6 3.7952 -5.9098 -1.8252 14 6 4.8439 -6.8156 -1.7965 15 6 6.0704 -6.3904 -1.3060 16 17 7.4197 -7.4811 -1.2469 17 6 6.2039 -5.0864 -0.8649 18 7 5.1847 -4.2509 -0.9125 19 6 1.5379 -4.8970 0.1818 20 6 0.0223 -4.8774 0.3901 21 6 0.9557 -5.1136 1.5800 22 1 -0.4850 0.8401 0.0004 23 1 0.6801 -2.5842 0.9319 24 1 0.5709 -2.5304 -0.8439 25 1 2.1543 -3.9163 -2.1635 26 1 3.2622 -2.6365 -1.6130 27 1 2.8266 -6.2062 -2.2000 28 1 4.7098 -7.8279 -2.1483 29 1 7.1548 -4.7472 -0.4812 30 1 1.9652 -5.7623 -0.3250 31 1 -0.4816 -3.9128 0.3287 32 1 -0.5475 -5.7300 0.0206 33 1 0.9996 -6.1214 1.9929 34 1 1.0663 -4.3045 2.3020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703851072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:32 Heat of formation + Delta-G solvation = 63.580310 kcal Electronic energy + Delta-G solvation = -17623.179853 eV Core-core repulsion = 14775.994860 eV Total energy + Delta-G solvation = -2847.184993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -40.27529 -38.01673 -36.69780 -33.88333 -32.65364 -32.42305 -30.80480 -27.24858 -25.31769 -23.75380 -22.67602 -21.90342 -21.69476 -19.04430 -17.06322 -16.85142 -16.45186 -15.74568 -15.33368 -14.78323 -14.29337 -14.05393 -13.69077 -13.37360 -12.97904 -12.59949 -12.21566 -12.10119 -11.85105 -11.44985 -11.31227 -11.01999 -10.84613 -10.74781 -10.66702 -10.15493 -9.91883 -9.90643 -9.65806 -9.33279 -9.14750 -8.76623 -8.43738 -7.18601 -6.04053 -4.05218 0.95476 1.19336 1.95214 3.33130 3.39527 3.45513 3.69511 4.37283 4.42621 4.45136 4.66301 4.70364 4.88121 4.99020 5.31939 5.32445 5.44805 5.52098 5.60046 5.64046 5.80917 5.94223 6.11282 6.13754 6.16458 6.40297 6.55115 6.63373 6.74360 7.21269 7.26758 7.79622 7.99076 8.08713 8.10631 8.49282 9.04127 9.59616 11.06529 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.005088 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.873762 B = 5502.038676 C = 6476.113760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.192 3.808 10 N -0.494 5.494 11 C 0.106 3.894 12 C 0.162 3.838 13 C -0.163 4.163 14 C -0.067 4.067 15 C -0.102 4.102 16 Cl -0.068 7.068 17 C 0.118 3.882 18 N -0.445 5.445 19 C 0.016 3.984 20 C -0.220 4.220 21 C -0.174 4.174 22 H 0.261 0.739 23 H 0.036 0.964 24 H 0.000 1.000 25 H 0.044 0.956 26 H 0.109 0.891 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.161 0.839 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 -14.522 -3.812 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.068 3.932 10 N -0.216 5.216 11 C -0.022 4.022 12 C 0.024 3.976 13 C -0.183 4.183 14 C -0.094 4.094 15 C -0.132 4.132 16 Cl -0.040 7.040 17 C -0.041 4.041 18 N -0.153 5.153 19 C -0.094 4.094 20 C -0.260 4.260 21 C -0.212 4.212 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.127 0.873 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.178 0.822 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.421 -13.520 -3.161 16.239 hybrid contribution -0.241 -0.315 -0.787 0.881 sum 8.181 -13.834 -3.948 16.550 Atomic orbital electron populations 1.69951 1.06057 1.26834 1.51004 1.24962 0.94827 0.99290 0.95327 0.86508 0.79927 0.83020 0.78078 1.20720 1.21332 1.19646 1.21215 0.93816 0.89743 1.50118 0.91455 1.19867 0.89909 0.86718 0.96690 1.61960 1.31199 1.01477 1.27012 1.20951 0.91057 0.98710 0.91456 1.21697 0.92987 0.92893 0.90058 1.22086 0.99827 0.94016 1.02402 1.21437 0.90914 1.00445 0.96573 1.22072 0.90494 0.93413 1.07174 1.98359 1.44785 1.63585 1.97272 1.22872 0.98499 0.87658 0.95082 1.67792 0.99376 1.35560 1.12619 1.22721 0.92385 0.94632 0.99665 1.23587 0.94681 1.03609 1.04075 1.22967 1.04343 1.01744 0.92167 0.92922 0.94585 0.98187 0.93746 0.87288 0.84144 0.84180 0.82165 0.88018 0.87184 0.90049 0.89712 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.06 8.30 -34.44 -0.29 -14.34 16 8 H 0.07 1.88 7.41 -52.49 -0.39 1.49 16 9 C 0.19 4.81 3.35 -4.97 -0.02 4.80 16 10 N -0.49 -10.41 4.68 -229.52 -1.07 -11.49 16 11 C 0.11 2.01 5.14 -4.98 -0.03 1.98 16 12 C 0.16 2.65 5.82 -82.58 -0.48 2.17 16 13 C -0.16 -2.11 8.12 -39.45 -0.32 -2.43 16 14 C -0.07 -0.77 9.98 -39.25 -0.39 -1.16 16 15 C -0.10 -1.25 6.34 -39.36 -0.25 -1.50 16 16 Cl -0.07 -0.72 28.99 -51.86 -1.50 -2.22 16 17 C 0.12 1.63 10.99 -17.51 -0.19 1.44 16 18 N -0.44 -7.61 10.27 -9.44 -0.10 -7.70 16 19 C 0.02 0.29 5.79 -67.72 -0.39 -0.11 16 20 C -0.22 -3.80 9.51 -26.70 -0.25 -4.05 16 21 C -0.17 -2.96 10.00 -26.70 -0.27 -3.23 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.04 0.97 6.16 -51.93 -0.32 0.65 16 24 H 0.00 0.01 7.79 -51.93 -0.40 -0.40 16 25 H 0.04 0.77 8.02 -51.93 -0.42 0.35 16 26 H 0.11 2.31 6.81 -51.92 -0.35 1.95 16 27 H 0.14 1.53 7.67 -52.49 -0.40 1.12 16 28 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.10 1.58 5.60 -51.93 -0.29 1.29 16 31 H 0.11 2.21 5.89 -51.93 -0.31 1.90 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.84 7.78 -51.93 -0.40 1.44 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -29.50 300.73 -9.51 -39.01 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.11 Total: 1.66 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.97 Total: -14.93 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.44 Total: -44.59 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.50 -9.51 -39.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703851072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.592 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds