Wall clock time and date at job start Mon Mar 30 2020 08:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48501 * 109.47369 * 270.00189 * 3 2 1 5 5 H 1.48507 * 109.47087 * 30.00125 * 3 2 1 6 6 H 1.48499 * 109.47281 * 149.99730 * 3 2 1 7 7 C 1.37875 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99583 * 359.72883 * 7 2 1 10 10 N 1.46900 * 109.47100 * 176.21146 * 9 7 2 11 11 C 1.46900 * 110.99848 * 292.84643 * 10 9 7 12 12 C 1.50698 * 109.47300 * 170.00006 * 11 10 9 13 13 C 1.38233 * 119.60789 * 95.00165 * 12 11 10 14 14 C 1.38607 * 119.17626 * 180.02562 * 13 12 11 15 15 C 1.38772 * 118.41168 * 359.97438 * 14 13 12 16 16 Cl 1.73602 * 120.43124 * 180.02562 * 15 14 13 17 17 C 1.38306 * 119.13983 * 0.02562 * 15 14 13 18 18 N 1.31858 * 119.60192 * 274.72701 * 12 11 10 19 19 C 1.46900 * 111.00300 * 168.89236 * 10 9 7 20 20 C 1.52997 * 117.49669 * 4.57343 * 19 10 9 21 21 C 1.52998 * 117.49828 * 295.91592 * 19 10 9 22 22 H 0.97004 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47019 * 296.20485 * 9 7 2 24 24 H 1.08998 * 109.47172 * 56.20950 * 9 7 2 25 25 H 1.08997 * 109.47318 * 289.99636 * 11 10 9 26 26 H 1.09010 * 109.47477 * 49.99773 * 11 10 9 27 27 H 1.08001 * 120.40477 * 359.97293 * 13 12 11 28 28 H 1.08003 * 120.78971 * 180.02562 * 14 13 12 29 29 H 1.07995 * 119.63115 * 179.97438 * 17 15 14 30 30 H 1.09000 * 115.55056 * 150.24532 * 19 10 9 31 31 H 1.09000 * 117.49861 * 0.02562 * 20 19 10 32 32 H 1.09007 * 117.49517 * 145.02177 * 20 19 10 33 33 H 1.09000 * 117.49915 * 214.98233 * 21 19 10 34 34 H 1.09002 * 117.49551 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0073 10 7 2.2026 -3.6144 -0.0850 11 6 2.8704 -3.6297 -1.3933 12 6 4.0040 -4.6224 -1.3671 13 6 3.7952 -5.9098 -1.8252 14 6 4.8439 -6.8156 -1.7965 15 6 6.0704 -6.3904 -1.3060 16 17 7.4197 -7.4811 -1.2469 17 6 6.2039 -5.0864 -0.8649 18 7 5.1847 -4.2509 -0.9125 19 6 1.5379 -4.8970 0.1818 20 6 0.0223 -4.8774 0.3901 21 6 0.9557 -5.1136 1.5800 22 1 -0.4850 0.8401 0.0004 23 1 0.6801 -2.5842 0.9319 24 1 0.5709 -2.5304 -0.8439 25 1 2.1543 -3.9163 -2.1635 26 1 3.2622 -2.6365 -1.6130 27 1 2.8266 -6.2062 -2.2000 28 1 4.7098 -7.8279 -2.1483 29 1 7.1548 -4.7472 -0.4812 30 1 1.9652 -5.7623 -0.3250 31 1 -0.4816 -3.9128 0.3287 32 1 -0.5475 -5.7300 0.0206 33 1 0.9996 -6.1214 1.9929 34 1 1.0663 -4.3045 2.3020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703851072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:32 Heat of formation + Delta-G solvation = 45.252529 kcal Electronic energy + Delta-G solvation = -17623.974605 eV Core-core repulsion = 14775.994860 eV Total energy + Delta-G solvation = -2847.979745 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39147 -39.50399 -37.62173 -35.49996 -34.50993 -33.46079 -32.21534 -29.06537 -26.86753 -24.84058 -24.46172 -23.13122 -23.07701 -20.60420 -18.76837 -18.01974 -17.60034 -17.22236 -16.91223 -16.30493 -15.99567 -15.21316 -15.03263 -14.55815 -14.33163 -14.08775 -13.71380 -13.63590 -13.19168 -12.89903 -12.80222 -12.59676 -12.50490 -12.34372 -12.13614 -11.89980 -11.67262 -11.18397 -11.11537 -10.80805 -10.59971 -10.42796 -9.83333 -8.83099 -8.19983 -6.29008 -0.10836 0.21270 1.01449 1.40271 1.41173 1.53389 2.39848 2.56543 2.99260 3.12535 3.28528 3.38705 3.70773 3.78830 3.95876 4.05528 4.10170 4.21902 4.27115 4.55768 4.66007 4.72619 4.80666 4.86523 4.92952 5.02648 5.10425 5.19958 5.31974 5.33828 5.51300 5.66848 6.07103 6.28092 6.62896 6.87310 6.99073 7.40450 8.90256 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.005088 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.873762 B = 5502.038676 C = 6476.113760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.215 3.785 10 N -0.509 5.509 11 C 0.112 3.888 12 C 0.138 3.862 13 C -0.153 4.153 14 C -0.056 4.056 15 C -0.096 4.096 16 Cl -0.048 7.048 17 C 0.106 3.894 18 N -0.487 5.487 19 C 0.008 3.992 20 C -0.216 4.216 21 C -0.170 4.170 22 H 0.264 0.736 23 H 0.010 0.990 24 H -0.025 1.025 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.166 0.834 28 H 0.177 0.823 29 H 0.175 0.825 30 H 0.134 0.866 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.101 -16.884 -4.390 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.075 0.925 9 C 0.089 3.911 10 N -0.232 5.232 11 C -0.016 4.016 12 C 0.001 3.999 13 C -0.173 4.173 14 C -0.082 4.082 15 C -0.125 4.125 16 Cl -0.019 7.019 17 C -0.052 4.052 18 N -0.196 5.196 19 C -0.101 4.101 20 C -0.255 4.255 21 C -0.208 4.208 22 H 0.073 0.927 23 H 0.028 0.972 24 H -0.007 1.007 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.183 0.817 28 H 0.194 0.806 29 H 0.192 0.808 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.549 -15.899 -3.743 18.920 hybrid contribution -0.504 0.319 -0.609 0.853 sum 9.045 -15.580 -4.352 18.533 Atomic orbital electron populations 1.70062 1.07441 1.27809 1.51770 1.25779 0.95660 1.02735 0.94832 0.85492 0.78538 0.78800 0.78468 1.19703 1.20590 1.19517 1.21474 0.93465 0.91363 1.50047 0.92548 1.19389 0.89695 0.87783 0.94191 1.61793 1.30555 1.01986 1.28841 1.20777 0.92170 0.98116 0.90562 1.21309 0.92103 0.93773 0.92742 1.22217 1.01436 0.92478 1.01214 1.21814 0.89751 1.01608 0.95034 1.22141 0.91488 0.93083 1.05807 1.98373 1.43867 1.62609 1.97099 1.23086 0.98267 0.88359 0.95534 1.67627 1.00422 1.37546 1.14043 1.22920 0.92698 0.93855 1.00644 1.23502 0.94403 1.03083 1.04481 1.23024 1.03705 1.02689 0.91353 0.92683 0.97174 1.00712 0.92642 0.90868 0.81694 0.80552 0.80847 0.84853 0.90963 0.86502 0.86016 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.53 -30.26 8.30 25.60 0.21 -30.04 16 8 H 0.06 3.30 7.41 -2.91 -0.02 3.28 16 9 C 0.21 11.35 3.35 85.56 0.29 11.64 16 10 N -0.51 -22.10 4.68 -880.07 -4.12 -26.22 16 11 C 0.11 4.33 5.14 85.56 0.44 4.77 16 12 C 0.14 4.44 5.82 42.55 0.25 4.69 16 13 C -0.15 -3.52 8.12 22.36 0.18 -3.34 16 14 C -0.06 -1.06 9.98 22.49 0.22 -0.84 16 15 C -0.10 -2.07 6.34 22.41 0.14 -1.92 16 16 Cl -0.05 -0.86 28.99 -2.72 -0.08 -0.94 16 17 C 0.11 2.80 10.99 84.70 0.93 3.73 16 18 N -0.49 -16.63 10.27 -183.79 -1.89 -18.52 16 19 C 0.01 0.28 5.79 44.91 0.26 0.54 16 20 C -0.22 -7.32 9.51 30.62 0.29 -7.03 16 21 C -0.17 -5.63 10.00 30.62 0.31 -5.32 16 22 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 23 H 0.01 0.59 6.16 -2.39 -0.01 0.57 16 24 H -0.02 -1.40 7.79 -2.39 -0.02 -1.42 16 25 H 0.06 1.96 8.02 -2.39 -0.02 1.94 16 26 H 0.07 3.30 6.81 -2.38 -0.02 3.28 16 27 H 0.17 2.92 7.67 -2.91 -0.02 2.90 16 28 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 29 H 0.17 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.13 3.75 5.60 -2.39 -0.01 3.74 16 31 H 0.07 3.03 5.89 -2.39 -0.01 3.02 16 32 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 33 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.07 2.66 7.78 -2.39 -0.02 2.64 16 Total: -1.00 -66.79 300.73 1.32 -65.47 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.11 Total: 10.65 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 3.98 Total: -22.18 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -5.72 Total: -100.28 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -66.79 1.32 -65.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703851072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.723 kcal (2) G-P(sol) polarization free energy of solvation -66.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds