Wall clock time and date at job start Mon Mar 30 2020 08:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99976 * 2 1 4 4 H 1.48494 * 109.47088 * 269.99913 * 3 2 1 5 5 H 1.48493 * 109.46787 * 30.00136 * 3 2 1 6 6 H 1.48499 * 109.46963 * 149.99957 * 3 2 1 7 7 C 1.37880 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00295 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99552 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46989 * 184.82797 * 9 7 2 11 11 C 1.46894 * 111.00073 * 285.48369 * 10 9 7 12 12 C 1.50704 * 109.47183 * 169.99886 * 11 10 9 13 13 N 1.31875 * 119.62642 * 90.00208 * 12 11 10 14 14 C 1.31850 * 121.74275 * 179.97438 * 13 12 11 15 15 C 1.38235 * 120.78681 * 0.02562 * 14 13 12 16 16 C 1.38603 * 119.17757 * 0.23459 * 15 14 13 17 17 C 1.38310 * 119.62766 * 269.98429 * 12 11 10 18 18 Cl 1.73594 * 120.43159 * 0.04206 * 17 12 11 19 19 C 1.46900 * 110.99616 * 161.53241 * 10 9 7 20 20 C 1.52999 * 117.50265 * 10.66125 * 19 10 9 21 21 C 1.52995 * 60.00098 * 252.50585 * 20 19 10 22 22 H 0.97001 * 120.00040 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46960 * 64.83382 * 9 7 2 24 24 H 1.08999 * 109.47604 * 304.83160 * 9 7 2 25 25 H 1.09006 * 109.47154 * 50.00538 * 11 10 9 26 26 H 1.08999 * 109.47807 * 289.99842 * 11 10 9 27 27 H 1.07997 * 119.60754 * 180.02562 * 14 13 12 28 28 H 1.08001 * 120.40720 * 179.97438 * 15 14 13 29 29 H 1.08010 * 120.79165 * 179.75175 * 16 15 14 30 30 H 1.09005 * 115.54766 * 156.37164 * 19 10 9 31 31 H 1.09000 * 117.49571 * 0.02562 * 20 19 10 32 32 H 1.09007 * 117.49828 * 145.01409 * 20 19 10 33 33 H 1.08988 * 117.50295 * 252.50719 * 21 20 19 34 34 H 1.08997 * 117.51379 * 107.47565 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2016 -3.6131 0.1186 11 6 2.9159 -3.8307 -1.1463 12 6 4.0444 -4.8047 -0.9249 13 7 3.8295 -6.0969 -1.0764 14 6 4.7864 -6.9854 -0.8939 15 6 6.0606 -6.5889 -0.5332 16 6 6.3244 -5.2394 -0.3590 17 6 5.2940 -4.3331 -0.5655 18 17 5.5677 -2.6303 -0.3677 19 6 1.5232 -4.8399 0.5579 20 6 -0.0067 -4.8359 0.5690 21 6 0.7680 -4.7922 1.8876 22 1 -0.4850 0.8400 0.0004 23 1 0.6907 -2.5959 -0.9282 24 1 0.5615 -2.5198 0.8455 25 1 3.3188 -2.8830 -1.5038 26 1 2.2270 -4.2354 -1.8878 27 1 4.5722 -8.0354 -1.0277 28 1 6.8397 -7.3219 -0.3848 29 1 7.3096 -4.9010 -0.0735 30 1 2.0226 -5.7727 0.2959 31 1 -0.5099 -3.9232 0.2500 32 1 -0.5143 -5.7663 0.3141 33 1 0.7701 -5.6936 2.5002 34 1 0.7747 -3.8506 2.4367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703853513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:03 Heat of formation + Delta-G solvation = 66.942900 kcal Electronic energy + Delta-G solvation = -18031.551382 eV Core-core repulsion = 15184.512202 eV Total energy + Delta-G solvation = -2847.039180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21818 -37.88922 -36.27021 -33.83324 -32.77282 -32.08360 -30.70721 -27.26256 -25.32816 -23.46730 -22.57912 -21.90034 -21.58816 -18.93047 -17.02518 -16.58752 -16.47329 -15.71375 -15.26269 -14.83204 -14.25873 -13.89628 -13.68369 -13.07058 -12.77607 -12.56986 -12.18739 -11.97354 -11.67989 -11.28881 -11.09006 -10.82361 -10.71590 -10.67180 -10.57903 -10.11259 -9.79172 -9.69029 -9.66001 -9.28008 -9.06962 -8.65717 -8.38479 -7.10707 -5.99055 -3.99196 1.04779 1.20616 2.37789 3.33291 3.39851 3.43958 3.71389 4.38415 4.45514 4.54525 4.76585 4.77297 4.99579 5.04399 5.34023 5.37211 5.56662 5.64738 5.69855 5.84454 5.87608 5.98969 6.25262 6.29549 6.32461 6.38569 6.63551 6.68924 6.85845 7.28120 7.32587 7.85966 7.99913 8.11207 8.19193 8.55853 9.09453 9.64464 11.11754 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.007657 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.093305 B = 3655.866372 C = 4897.182932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.190 3.810 10 N -0.492 5.492 11 C 0.104 3.896 12 C 0.162 3.838 13 N -0.469 5.469 14 C 0.096 3.904 15 C -0.173 4.173 16 C -0.073 4.073 17 C -0.071 4.071 18 Cl -0.034 7.034 19 C 0.022 3.978 20 C -0.223 4.223 21 C -0.177 4.177 22 H 0.260 0.740 23 H -0.006 1.006 24 H 0.043 0.957 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.439 -12.335 -1.163 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.088 0.912 9 C 0.066 3.934 10 N -0.215 5.215 11 C -0.024 4.024 12 C 0.024 3.976 13 N -0.179 5.179 14 C -0.062 4.062 15 C -0.194 4.194 16 C -0.100 4.100 17 C -0.101 4.101 18 Cl -0.004 7.004 19 C -0.088 4.088 20 C -0.262 4.262 21 C -0.215 4.215 22 H 0.070 0.930 23 H 0.011 0.989 24 H 0.061 0.939 25 H 0.124 0.876 26 H 0.065 0.935 27 H 0.174 0.826 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.829 -12.175 -1.036 15.682 hybrid contribution 0.695 1.037 -0.207 1.265 sum 10.523 -11.139 -1.243 15.374 Atomic orbital electron populations 1.69949 1.05985 1.26658 1.51321 1.24947 0.94783 0.99088 0.95638 0.86597 0.79941 0.83496 0.78040 1.20750 1.21300 1.19803 1.21255 0.93950 0.89641 1.49456 0.91211 1.19894 0.90325 0.86807 0.96395 1.62022 1.29308 1.03511 1.26614 1.21015 0.92183 0.96553 0.92664 1.21474 0.93076 0.91046 0.92034 1.67702 1.34393 1.01565 1.14237 1.22810 0.88938 0.99448 0.94954 1.22041 0.98860 0.95765 1.02704 1.21518 0.98854 0.92616 0.96967 1.21932 0.95919 0.87819 1.04402 1.98419 1.96145 1.10520 1.95363 1.22797 0.90664 0.95204 1.00146 1.23536 0.96997 1.03045 1.02603 1.22964 1.04970 1.02501 0.91021 0.93007 0.98867 0.93896 0.87605 0.93530 0.82571 0.84448 0.84176 0.86798 0.87552 0.90185 0.89874 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -13.86 8.58 -34.44 -0.30 -14.16 16 8 H 0.07 1.87 7.32 -52.49 -0.38 1.49 16 9 C 0.19 4.85 3.38 -4.97 -0.02 4.84 16 10 N -0.49 -10.74 4.64 -229.52 -1.06 -11.80 16 11 C 0.10 2.07 4.69 -4.98 -0.02 2.05 16 12 C 0.16 2.80 5.72 -82.54 -0.47 2.33 16 13 N -0.47 -7.37 8.78 -9.44 -0.08 -7.45 16 14 C 0.10 1.15 11.18 -17.54 -0.20 0.95 16 15 C -0.17 -1.82 10.11 -39.45 -0.40 -2.22 16 16 C -0.07 -0.90 9.98 -39.25 -0.39 -1.29 16 17 C -0.07 -1.12 6.34 -39.36 -0.25 -1.37 16 18 Cl -0.03 -0.57 27.07 -51.86 -1.40 -1.97 16 19 C 0.02 0.43 5.83 -67.71 -0.39 0.04 16 20 C -0.22 -4.19 9.56 -26.73 -0.26 -4.44 16 21 C -0.18 -3.26 9.91 -26.73 -0.26 -3.52 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H -0.01 -0.18 7.82 -51.93 -0.41 -0.58 16 24 H 0.04 1.17 5.62 -51.93 -0.29 0.88 16 25 H 0.11 2.22 5.97 -51.93 -0.31 1.91 16 26 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.11 2.13 6.15 -51.93 -0.32 1.81 16 31 H 0.11 2.27 6.02 -51.93 -0.31 1.95 16 32 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.08 1.31 8.14 -51.94 -0.42 0.89 16 34 H 0.10 1.99 7.46 -51.93 -0.39 1.60 16 LS Contribution 298.64 15.07 4.50 4.50 Total: -1.00 -29.98 298.64 -9.48 -39.45 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.08 Total: 1.66 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -3.06 Total: -15.31 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.41 Total: -45.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.40 Total: -1.97 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.98 -9.48 -39.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703853513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.397 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds