Wall clock time and date at job start Mon Mar 30 2020 08:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99976 * 2 1 4 4 H 1.48494 * 109.47088 * 269.99913 * 3 2 1 5 5 H 1.48493 * 109.46787 * 30.00136 * 3 2 1 6 6 H 1.48499 * 109.46963 * 149.99957 * 3 2 1 7 7 C 1.37880 * 120.00510 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00295 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99552 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46989 * 184.82797 * 9 7 2 11 11 C 1.46894 * 111.00073 * 285.48369 * 10 9 7 12 12 C 1.50704 * 109.47183 * 169.99886 * 11 10 9 13 13 N 1.31875 * 119.62642 * 90.00208 * 12 11 10 14 14 C 1.31850 * 121.74275 * 179.97438 * 13 12 11 15 15 C 1.38235 * 120.78681 * 0.02562 * 14 13 12 16 16 C 1.38603 * 119.17757 * 0.23459 * 15 14 13 17 17 C 1.38310 * 119.62766 * 269.98429 * 12 11 10 18 18 Cl 1.73594 * 120.43159 * 0.04206 * 17 12 11 19 19 C 1.46900 * 110.99616 * 161.53241 * 10 9 7 20 20 C 1.52999 * 117.50265 * 10.66125 * 19 10 9 21 21 C 1.52995 * 60.00098 * 252.50585 * 20 19 10 22 22 H 0.97001 * 120.00040 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46960 * 64.83382 * 9 7 2 24 24 H 1.08999 * 109.47604 * 304.83160 * 9 7 2 25 25 H 1.09006 * 109.47154 * 50.00538 * 11 10 9 26 26 H 1.08999 * 109.47807 * 289.99842 * 11 10 9 27 27 H 1.07997 * 119.60754 * 180.02562 * 14 13 12 28 28 H 1.08001 * 120.40720 * 179.97438 * 15 14 13 29 29 H 1.08010 * 120.79165 * 179.75175 * 16 15 14 30 30 H 1.09005 * 115.54766 * 156.37164 * 19 10 9 31 31 H 1.09000 * 117.49571 * 0.02562 * 20 19 10 32 32 H 1.09007 * 117.49828 * 145.01409 * 20 19 10 33 33 H 1.08988 * 117.50295 * 252.50719 * 21 20 19 34 34 H 1.08997 * 117.51379 * 107.47565 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2016 -3.6131 0.1186 11 6 2.9159 -3.8307 -1.1463 12 6 4.0444 -4.8047 -0.9249 13 7 3.8295 -6.0969 -1.0764 14 6 4.7864 -6.9854 -0.8939 15 6 6.0606 -6.5889 -0.5332 16 6 6.3244 -5.2394 -0.3590 17 6 5.2940 -4.3331 -0.5655 18 17 5.5677 -2.6303 -0.3677 19 6 1.5232 -4.8399 0.5579 20 6 -0.0067 -4.8359 0.5690 21 6 0.7680 -4.7922 1.8876 22 1 -0.4850 0.8400 0.0004 23 1 0.6907 -2.5959 -0.9282 24 1 0.5615 -2.5198 0.8455 25 1 3.3188 -2.8830 -1.5038 26 1 2.2270 -4.2354 -1.8878 27 1 4.5722 -8.0354 -1.0277 28 1 6.8397 -7.3219 -0.3848 29 1 7.3096 -4.9010 -0.0735 30 1 2.0226 -5.7727 0.2959 31 1 -0.5099 -3.9232 0.2500 32 1 -0.5143 -5.7663 0.3141 33 1 0.7701 -5.6936 2.5002 34 1 0.7747 -3.8506 2.4367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703853513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:02 Heat of formation + Delta-G solvation = 48.326907 kcal Electronic energy + Delta-G solvation = -18032.358632 eV Core-core repulsion = 15184.512202 eV Total energy + Delta-G solvation = -2847.846430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33694 -39.48711 -37.47792 -35.47132 -34.59146 -33.28313 -32.08312 -29.10613 -26.89916 -24.69277 -24.31152 -23.19409 -23.06550 -20.60170 -18.76314 -17.87111 -17.63379 -17.10429 -16.90298 -16.41019 -16.01706 -15.18785 -14.96607 -14.41212 -14.32417 -13.96030 -13.83262 -13.43689 -13.08880 -12.94557 -12.85398 -12.58587 -12.51495 -12.33104 -12.05045 -11.90153 -11.51136 -11.17568 -11.10488 -10.69838 -10.57829 -10.42134 -9.78903 -8.85604 -8.16212 -6.23797 -0.00526 0.20517 1.21427 1.39156 1.39957 1.51120 2.40239 2.61810 2.99337 3.14475 3.23821 3.49785 3.68383 3.90418 4.04888 4.08262 4.16442 4.25632 4.43934 4.52316 4.58235 4.76879 4.78177 4.83955 5.04145 5.06820 5.11654 5.21411 5.30966 5.32798 5.62942 5.73469 6.10004 6.32962 6.60950 6.92524 6.94741 7.44426 8.94712 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.007657 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.093305 B = 3655.866372 C = 4897.182932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.211 3.789 10 N -0.497 5.497 11 C 0.111 3.889 12 C 0.137 3.863 13 N -0.492 5.492 14 C 0.095 3.905 15 C -0.148 4.148 16 C -0.071 4.071 17 C -0.088 4.088 18 Cl -0.058 7.058 19 C 0.013 3.987 20 C -0.220 4.220 21 C -0.166 4.166 22 H 0.262 0.738 23 H -0.038 1.038 24 H 0.019 0.981 25 H 0.085 0.915 26 H 0.033 0.967 27 H 0.195 0.805 28 H 0.186 0.814 29 H 0.168 0.832 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.856 -14.610 -0.688 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.091 0.909 9 C 0.086 3.914 10 N -0.219 5.219 11 C -0.017 4.017 12 C -0.001 4.001 13 N -0.202 5.202 14 C -0.063 4.063 15 C -0.168 4.168 16 C -0.097 4.097 17 C -0.117 4.117 18 Cl -0.029 7.029 19 C -0.097 4.097 20 C -0.259 4.259 21 C -0.204 4.204 22 H 0.071 0.929 23 H -0.021 1.021 24 H 0.037 0.963 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.212 0.788 28 H 0.204 0.796 29 H 0.185 0.815 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.256 -14.458 -0.563 18.962 hybrid contribution -0.004 1.552 -0.378 1.597 sum 12.252 -12.907 -0.940 17.821 Atomic orbital electron populations 1.70081 1.07533 1.27563 1.52387 1.25787 0.95587 1.02656 0.95281 0.85585 0.78773 0.79178 0.78403 1.19877 1.20803 1.19092 1.21608 0.94305 0.90665 1.48869 0.90864 1.19460 0.90182 0.88176 0.93624 1.61918 1.28417 1.03709 1.27899 1.20796 0.92853 0.96759 0.91312 1.20899 0.92548 0.91420 0.95200 1.67605 1.36363 1.01143 1.15107 1.23536 0.88910 1.00414 0.93425 1.22569 0.99296 0.95662 0.99279 1.21919 0.99010 0.92890 0.95872 1.22045 0.96588 0.87166 1.05910 1.98403 1.96153 1.12758 1.95620 1.22915 0.90983 0.94692 1.01062 1.23453 0.96512 1.02851 1.03111 1.23000 1.03786 1.02856 0.90726 0.92912 1.02058 0.96343 0.89641 0.94896 0.78816 0.79637 0.81475 0.85202 0.90973 0.87188 0.86221 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.52 -29.50 8.58 25.60 0.22 -29.28 16 8 H 0.07 4.06 7.32 -2.91 -0.02 4.04 16 9 C 0.21 11.43 3.38 85.56 0.29 11.72 16 10 N -0.50 -22.53 4.64 -880.05 -4.08 -26.62 16 11 C 0.11 4.61 4.69 85.56 0.40 5.01 16 12 C 0.14 4.66 5.72 42.57 0.24 4.91 16 13 N -0.49 -14.53 8.78 -183.79 -1.61 -16.14 16 14 C 0.09 1.87 11.18 84.69 0.95 2.82 16 15 C -0.15 -2.35 10.11 22.36 0.23 -2.12 16 16 C -0.07 -1.49 9.98 22.49 0.22 -1.27 16 17 C -0.09 -2.66 6.34 22.42 0.14 -2.52 16 18 Cl -0.06 -1.98 27.07 -2.72 -0.07 -2.06 16 19 C 0.01 0.51 5.83 44.92 0.26 0.78 16 20 C -0.22 -8.40 9.56 30.59 0.29 -8.11 16 21 C -0.17 -6.07 9.91 30.59 0.30 -5.76 16 22 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 23 H -0.04 -2.26 7.82 -2.39 -0.02 -2.28 16 24 H 0.02 1.08 5.62 -2.39 -0.01 1.07 16 25 H 0.09 3.81 5.97 -2.38 -0.01 3.80 16 26 H 0.03 1.40 8.12 -2.39 -0.02 1.38 16 27 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.13 4.71 6.15 -2.38 -0.01 4.69 16 31 H 0.07 3.27 6.02 -2.39 -0.01 3.26 16 32 H 0.11 3.49 8.14 -2.38 -0.02 3.48 16 33 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.07 3.02 7.46 -2.39 -0.02 3.00 16 Total: -1.00 -68.53 298.64 1.66 -66.87 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.11 Total: 10.46 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.01 Total: -23.10 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -5.41 Total: -99.51 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.07 Total: -2.06 kcal Total: -68.53 1.66 -66.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703853513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.197 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds