Wall clock time and date at job start Mon Mar 30 2020 08:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48503 * 109.46842 * 239.99951 * 3 2 1 5 5 H 1.48495 * 109.47099 * 119.99988 * 3 2 1 6 6 H 1.48503 * 109.47290 * 359.97438 * 3 2 1 7 7 C 1.37870 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00228 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.62714 * 303.10340 * 9 7 2 11 11 C 1.55138 * 110.70488 * 66.40260 * 9 7 2 12 12 C 1.54907 * 101.65186 * 154.03507 * 11 9 7 13 13 N 1.47839 * 104.79854 * 322.92856 * 12 11 9 14 14 C 1.46901 * 111.00205 * 146.36261 * 13 12 11 15 15 C 1.50690 * 109.47395 * 173.30696 * 14 13 12 16 16 N 1.31879 * 119.63428 * 95.29620 * 15 14 13 17 17 C 1.31846 * 121.74102 * 179.97438 * 16 15 14 18 18 C 1.38229 * 120.79720 * 359.97438 * 17 16 15 19 19 C 1.38605 * 119.17485 * 0.02562 * 18 17 16 20 20 C 1.38312 * 119.62712 * 275.02475 * 15 14 13 21 21 Cl 1.73602 * 120.42939 * 359.97438 * 20 15 14 22 22 C 1.47442 * 108.56586 * 24.09854 * 13 12 11 23 23 H 0.96991 * 120.00224 * 179.97438 * 1 2 3 24 24 H 1.09006 * 110.98957 * 272.12461 * 11 9 7 25 25 H 1.08994 * 110.99258 * 35.94185 * 11 9 7 26 26 H 1.08997 * 110.37575 * 204.09432 * 12 11 9 27 27 H 1.09003 * 110.46660 * 81.80546 * 12 11 9 28 28 H 1.09005 * 109.47339 * 293.30410 * 14 13 12 29 29 H 1.09000 * 109.46813 * 53.30047 * 14 13 12 30 30 H 1.08002 * 119.60281 * 179.97438 * 17 16 15 31 31 H 1.07999 * 120.41313 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.79802 * 179.97438 * 19 18 17 33 33 H 1.09008 * 109.88720 * 239.60509 * 22 13 12 34 34 H 1.08994 * 110.02753 * 118.49331 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2842 2.7465 -0.0006 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.5767 -2.5525 0.8566 11 6 0.4731 -2.6846 -1.3277 12 6 0.3726 -4.2277 -1.4188 13 7 1.6616 -4.7219 -0.8896 14 6 1.4854 -5.9955 -0.1791 15 6 2.8342 -6.5491 0.2018 16 7 3.3207 -6.3114 1.4043 17 6 4.4958 -6.7756 1.7813 18 6 5.2658 -7.5355 0.9209 19 6 4.7886 -7.8070 -0.3518 20 6 3.5456 -7.3055 -0.7118 21 17 2.8940 -7.6200 -2.2899 22 6 2.2282 -3.6935 0.0022 23 1 -0.4850 -0.8400 -0.0004 24 1 -0.5166 -2.2317 -1.2674 25 1 1.0355 -2.2796 -2.1689 26 1 0.2436 -4.5391 -2.4553 27 1 -0.4533 -4.5926 -0.8081 28 1 0.8931 -5.8306 0.7210 29 1 0.9712 -6.7051 -0.8274 30 1 4.8611 -6.5595 2.7744 31 1 6.2276 -7.9123 1.2360 32 1 5.3685 -8.3976 -1.0455 33 1 3.2022 -3.3757 -0.3701 34 1 2.3289 -4.0898 1.0125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703853629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:57 Heat of formation + Delta-G solvation = 28.963423 kcal Electronic energy + Delta-G solvation = -17871.505244 eV Core-core repulsion = 15022.819150 eV Total energy + Delta-G solvation = -2848.686094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40023 -38.05647 -36.58147 -33.88365 -32.55961 -31.79762 -29.51810 -28.22650 -25.81788 -23.94595 -23.60127 -22.03337 -20.14500 -19.66887 -17.05552 -16.91210 -16.72422 -15.85259 -15.52874 -14.62989 -13.98833 -13.84495 -13.70777 -13.33936 -12.75096 -12.60820 -12.50471 -12.07274 -11.98410 -11.45579 -11.29336 -11.04126 -10.78813 -10.67962 -10.47392 -10.07338 -9.86355 -9.73623 -9.56411 -9.47667 -8.88319 -8.44688 -8.30547 -7.69526 -6.29486 -4.00426 0.86692 1.05688 2.06760 3.46825 3.48489 3.55653 3.67039 4.18220 4.54559 4.57438 4.64159 4.77569 4.85821 5.20674 5.33968 5.42418 5.49270 5.71487 5.80895 5.81998 5.95360 6.01717 6.13333 6.32962 6.41085 6.43299 6.79341 6.98125 7.01148 7.29939 7.43361 7.66701 7.78428 7.87570 8.28880 8.48222 8.93150 9.70758 11.08752 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.005233 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.647961 B = 5349.227692 C = 5912.711934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 1.067 2.933 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.587 4.587 8 H 0.049 0.951 9 C 0.019 3.981 10 H 0.021 0.979 11 C -0.118 4.118 12 C 0.043 3.957 13 N -0.521 5.521 14 C 0.093 3.907 15 C 0.160 3.840 16 N -0.462 5.462 17 C 0.103 3.897 18 C -0.169 4.169 19 C -0.072 4.072 20 C -0.070 4.070 21 Cl -0.048 7.048 22 C 0.052 3.948 23 H 0.270 0.730 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.064 0.936 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.403 -17.168 -0.557 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.185 4.185 3 Si 0.895 3.105 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.625 4.625 8 H 0.067 0.933 9 C 0.000 4.000 10 H 0.039 0.961 11 C -0.157 4.157 12 C -0.085 4.085 13 N -0.246 5.246 14 C -0.036 4.036 15 C 0.021 3.979 16 N -0.171 5.171 17 C -0.054 4.054 18 C -0.189 4.189 19 C -0.098 4.098 20 C -0.100 4.100 21 Cl -0.019 7.019 22 C -0.075 4.075 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.178 0.822 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.983 -15.144 -0.521 16.684 hybrid contribution 0.292 -2.136 -0.033 2.156 sum 7.275 -17.280 -0.554 18.757 Atomic orbital electron populations 1.70799 1.06828 1.30811 1.46580 1.25770 0.96557 1.02470 0.93656 0.83575 0.74913 0.75495 0.76485 1.21494 1.21541 1.20843 1.21885 0.93919 0.91189 1.55550 0.93313 1.19963 0.93508 0.93908 0.92620 0.96107 1.22868 1.00581 0.91163 1.01109 1.23054 0.89199 0.97545 0.98676 1.63687 1.24498 1.02003 1.34376 1.21149 0.90354 0.94027 0.98045 1.21161 0.96646 0.92022 0.88093 1.67708 1.13747 1.19318 1.16352 1.22881 0.89744 0.92805 1.00003 1.22111 1.01764 1.00988 0.94049 1.21508 0.93586 0.97875 0.96838 1.21824 0.96360 1.02767 0.89038 1.98371 1.85732 1.94202 1.23584 1.22933 0.99253 0.91408 0.93882 0.91821 0.92092 0.91707 0.91527 0.94680 0.92846 0.89425 0.82173 0.84102 0.83998 0.91760 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.55 13.49 55.43 0.75 -26.80 16 2 C 0.02 0.56 5.36 -17.82 -0.10 0.47 16 3 Si 1.07 25.51 29.90 -169.99 -5.08 20.43 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.59 -16.74 8.47 -34.44 -0.29 -17.03 16 8 H 0.05 1.40 7.53 -52.48 -0.40 1.00 16 9 C 0.02 0.50 2.43 -89.95 -0.22 0.28 16 10 H 0.02 0.57 7.92 -51.93 -0.41 0.16 16 11 C -0.12 -2.76 5.86 -24.59 -0.14 -2.90 16 12 C 0.04 0.82 6.71 -2.30 -0.02 0.80 16 13 N -0.52 -10.12 5.18 -232.70 -1.21 -11.32 16 14 C 0.09 1.55 4.32 -4.98 -0.02 1.53 16 15 C 0.16 2.52 5.67 -82.55 -0.47 2.05 16 16 N -0.46 -7.27 9.34 -9.45 -0.09 -7.36 16 17 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 18 C -0.17 -1.68 10.11 -39.45 -0.40 -2.08 16 19 C -0.07 -0.79 9.98 -39.24 -0.39 -1.18 16 20 C -0.07 -0.97 6.34 -39.35 -0.25 -1.22 16 21 Cl -0.05 -0.62 27.43 -51.86 -1.42 -2.05 16 22 C 0.05 1.17 5.94 -2.84 -0.02 1.16 16 23 H 0.27 8.05 5.59 -40.82 -0.23 7.82 16 24 H 0.06 1.46 6.77 -51.93 -0.35 1.11 16 25 H 0.06 1.60 8.04 -51.93 -0.42 1.18 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.03 0.64 7.81 -51.93 -0.41 0.23 16 28 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.09 1.30 7.09 -51.93 -0.37 0.93 16 30 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.06 1.55 7.63 -51.92 -0.40 1.16 16 34 H 0.05 1.11 6.50 -51.93 -0.34 0.78 16 LS Contribution 294.30 15.07 4.44 4.44 Total: -1.00 -31.32 294.30 -9.34 -40.66 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.22 Total: -0.91 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.51 Total: -17.08 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.55 Total: -45.48 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.42 Total: -2.05 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.32 -9.34 -40.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703853629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.624 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds