Wall clock time and date at job start Mon Mar 30 2020 08:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48503 * 109.46842 * 239.99951 * 3 2 1 5 5 H 1.48495 * 109.47099 * 119.99988 * 3 2 1 6 6 H 1.48503 * 109.47290 * 359.97438 * 3 2 1 7 7 C 1.37870 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00228 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.62714 * 303.10340 * 9 7 2 11 11 C 1.55138 * 110.70488 * 66.40260 * 9 7 2 12 12 C 1.54907 * 101.65186 * 154.03507 * 11 9 7 13 13 N 1.47839 * 104.79854 * 322.92856 * 12 11 9 14 14 C 1.46901 * 111.00205 * 146.36261 * 13 12 11 15 15 C 1.50690 * 109.47395 * 173.30696 * 14 13 12 16 16 N 1.31879 * 119.63428 * 95.29620 * 15 14 13 17 17 C 1.31846 * 121.74102 * 179.97438 * 16 15 14 18 18 C 1.38229 * 120.79720 * 359.97438 * 17 16 15 19 19 C 1.38605 * 119.17485 * 0.02562 * 18 17 16 20 20 C 1.38312 * 119.62712 * 275.02475 * 15 14 13 21 21 Cl 1.73602 * 120.42939 * 359.97438 * 20 15 14 22 22 C 1.47442 * 108.56586 * 24.09854 * 13 12 11 23 23 H 0.96991 * 120.00224 * 179.97438 * 1 2 3 24 24 H 1.09006 * 110.98957 * 272.12461 * 11 9 7 25 25 H 1.08994 * 110.99258 * 35.94185 * 11 9 7 26 26 H 1.08997 * 110.37575 * 204.09432 * 12 11 9 27 27 H 1.09003 * 110.46660 * 81.80546 * 12 11 9 28 28 H 1.09005 * 109.47339 * 293.30410 * 14 13 12 29 29 H 1.09000 * 109.46813 * 53.30047 * 14 13 12 30 30 H 1.08002 * 119.60281 * 179.97438 * 17 16 15 31 31 H 1.07999 * 120.41313 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.79802 * 179.97438 * 19 18 17 33 33 H 1.09008 * 109.88720 * 239.60509 * 22 13 12 34 34 H 1.08994 * 110.02753 * 118.49331 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2842 2.7465 -0.0006 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.5767 -2.5525 0.8566 11 6 0.4731 -2.6846 -1.3277 12 6 0.3726 -4.2277 -1.4188 13 7 1.6616 -4.7219 -0.8896 14 6 1.4854 -5.9955 -0.1791 15 6 2.8342 -6.5491 0.2018 16 7 3.3207 -6.3114 1.4043 17 6 4.4958 -6.7756 1.7813 18 6 5.2658 -7.5355 0.9209 19 6 4.7886 -7.8070 -0.3518 20 6 3.5456 -7.3055 -0.7118 21 17 2.8940 -7.6200 -2.2899 22 6 2.2282 -3.6935 0.0022 23 1 -0.4850 -0.8400 -0.0004 24 1 -0.5166 -2.2317 -1.2674 25 1 1.0355 -2.2796 -2.1689 26 1 0.2436 -4.5391 -2.4553 27 1 -0.4533 -4.5926 -0.8081 28 1 0.8931 -5.8306 0.7210 29 1 0.9712 -6.7051 -0.8274 30 1 4.8611 -6.5595 2.7744 31 1 6.2276 -7.9123 1.2360 32 1 5.3685 -8.3976 -1.0455 33 1 3.2022 -3.3757 -0.3701 34 1 2.3289 -4.0898 1.0125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703853629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:57 Heat of formation + Delta-G solvation = 8.874404 kcal Electronic energy + Delta-G solvation = -17872.376369 eV Core-core repulsion = 15022.819150 eV Total energy + Delta-G solvation = -2849.557219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42936 -39.71922 -37.57096 -35.69987 -33.81727 -33.04690 -31.05659 -30.03798 -27.27686 -25.93878 -24.55366 -23.24597 -21.90280 -21.47352 -19.01902 -18.00068 -17.81672 -17.16257 -16.76639 -16.28712 -15.66033 -15.12901 -15.01512 -14.55637 -14.40088 -14.18272 -13.89407 -13.56642 -13.25781 -13.00710 -12.78037 -12.70718 -12.60147 -12.22660 -11.95587 -11.92767 -11.67378 -11.50806 -10.78877 -10.59550 -10.51715 -10.47990 -9.87694 -9.30668 -8.60180 -6.32088 -0.09110 0.15000 1.08368 1.52373 1.60286 1.79756 2.54333 2.57472 3.07953 3.19052 3.33014 3.58019 3.83196 3.97970 4.01094 4.10165 4.25709 4.36620 4.42468 4.45573 4.46827 4.64366 4.73427 4.82002 4.94374 5.02249 5.04475 5.17141 5.33614 5.48330 5.54168 5.95354 6.07489 6.11497 6.20671 6.64899 6.89205 7.47060 8.78802 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.005233 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.647961 B = 5349.227692 C = 5912.711934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.028 4.028 3 Si 1.113 2.887 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.604 4.604 8 H 0.041 0.959 9 C 0.009 3.991 10 H -0.007 1.007 11 C -0.110 4.110 12 C 0.052 3.948 13 N -0.519 5.519 14 C 0.096 3.904 15 C 0.129 3.871 16 N -0.500 5.500 17 C 0.089 3.911 18 C -0.148 4.148 19 C -0.071 4.071 20 C -0.081 4.081 21 Cl -0.048 7.048 22 C 0.074 3.926 23 H 0.260 0.740 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.106 0.894 30 H 0.185 0.815 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.044 0.956 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.341 -18.572 -0.834 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.226 4.226 3 Si 0.935 3.065 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.208 1.208 7 C -0.642 4.642 8 H 0.059 0.941 9 C -0.010 4.010 10 H 0.011 0.989 11 C -0.149 4.149 12 C -0.075 4.075 13 N -0.243 5.243 14 C -0.032 4.032 15 C -0.009 4.009 16 N -0.210 5.210 17 C -0.068 4.068 18 C -0.168 4.168 19 C -0.097 4.097 20 C -0.110 4.110 21 Cl -0.019 7.019 22 C -0.053 4.053 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.202 0.798 31 H 0.202 0.798 32 H 0.190 0.810 33 H 0.063 0.937 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.919 -16.583 -0.803 18.847 hybrid contribution -0.250 -1.792 0.111 1.813 sum 8.669 -18.375 -0.692 20.329 Atomic orbital electron populations 1.70908 1.07679 1.30331 1.48347 1.27193 0.96658 1.06108 0.92686 0.82986 0.74191 0.71606 0.77747 1.19770 1.19812 1.20759 1.22219 0.93826 0.92793 1.55372 0.94071 1.19963 0.93940 0.94414 0.92726 0.98878 1.22640 0.99008 0.94337 0.98925 1.23011 0.89691 0.94268 1.00508 1.63649 1.24422 1.02265 1.33974 1.21147 0.91840 0.92673 0.97528 1.20955 0.96747 0.94090 0.89140 1.67612 1.15784 1.20796 1.16811 1.23434 0.88946 0.92818 1.01581 1.22572 1.02642 0.98700 0.92881 1.21950 0.92596 0.97327 0.97829 1.21944 0.97335 1.02984 0.88751 1.98365 1.85927 1.94176 1.23479 1.22536 0.97528 0.91027 0.94250 0.92884 0.93426 0.93422 0.88976 0.93394 0.94131 0.87622 0.79771 0.79792 0.80974 0.93727 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.49 21.45 0.29 -57.39 16 2 C -0.03 -1.64 5.36 84.65 0.45 -1.18 16 3 Si 1.11 51.40 29.90 68.60 2.05 53.45 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.60 -35.32 8.47 25.60 0.22 -35.10 16 8 H 0.04 2.41 7.53 -2.91 -0.02 2.39 16 9 C 0.01 0.48 2.43 -10.36 -0.03 0.45 16 10 H -0.01 -0.40 7.92 -2.38 -0.02 -0.42 16 11 C -0.11 -5.27 5.86 31.98 0.19 -5.08 16 12 C 0.05 1.99 6.71 86.77 0.58 2.57 16 13 N -0.52 -20.07 5.18 -890.12 -4.61 -24.68 16 14 C 0.10 3.18 4.32 85.55 0.37 3.55 16 15 C 0.13 3.96 5.67 42.57 0.24 4.20 16 16 N -0.50 -15.42 9.34 -183.80 -1.72 -17.14 16 17 C 0.09 1.96 11.18 84.69 0.95 2.90 16 18 C -0.15 -2.39 10.11 22.36 0.23 -2.17 16 19 C -0.07 -1.33 9.98 22.49 0.22 -1.10 16 20 C -0.08 -2.07 6.34 22.42 0.14 -1.92 16 21 Cl -0.05 -1.18 27.43 -2.72 -0.07 -1.25 16 22 C 0.07 3.42 5.94 86.65 0.51 3.94 16 23 H 0.26 16.11 5.59 -92.71 -0.52 15.59 16 24 H 0.05 2.36 6.77 -2.38 -0.02 2.35 16 25 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 26 H 0.09 3.07 8.14 -2.39 -0.02 3.06 16 27 H 0.05 1.71 7.81 -2.39 -0.02 1.69 16 28 H 0.04 1.43 8.08 -2.38 -0.02 1.41 16 29 H 0.11 3.03 7.09 -2.39 -0.02 3.01 16 30 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.04 2.20 7.63 -2.38 -0.02 2.19 16 34 H 0.05 2.16 6.50 -2.39 -0.02 2.14 16 Total: -1.00 -69.65 294.30 1.37 -68.29 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.35 Total: 7.67 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 4.08 Total: -28.95 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -6.04 Total: -99.21 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -69.65 1.37 -68.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703853629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.162 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds