Wall clock time and date at job start Mon Mar 30 2020 08:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99431 * 2 1 4 4 H 1.48500 * 109.47014 * 270.00077 * 3 2 1 5 5 H 1.48501 * 109.46590 * 150.00339 * 3 2 1 6 6 H 1.48496 * 109.47090 * 30.00371 * 3 2 1 7 7 C 1.37870 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00005 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00354 * 179.97438 * 7 2 1 10 10 H 1.08999 * 110.64471 * 61.68785 * 9 7 2 11 11 C 1.54599 * 110.72129 * 298.54095 * 9 7 2 12 12 C 1.53990 * 105.14340 * 219.68194 * 11 9 7 13 13 N 1.47902 * 107.05672 * 358.77530 * 12 11 9 14 14 C 1.46900 * 111.00346 * 145.83937 * 13 12 11 15 15 C 1.50694 * 109.47269 * 164.48724 * 14 13 12 16 16 N 1.31878 * 119.62767 * 95.35657 * 15 14 13 17 17 C 1.31851 * 121.74185 * 179.97438 * 16 15 14 18 18 C 1.38230 * 120.79334 * 359.97438 * 17 16 15 19 19 C 1.38611 * 119.17217 * 0.02562 * 18 17 16 20 20 C 1.38314 * 119.63098 * 275.08333 * 15 14 13 21 21 Cl 1.73600 * 120.42914 * 359.97438 * 20 15 14 22 22 C 1.48531 * 105.81918 * 25.32847 * 13 12 11 23 23 H 0.96993 * 120.00211 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.30917 * 338.60004 * 11 9 7 25 25 H 1.09007 * 110.31145 * 100.66637 * 11 9 7 26 26 H 1.09001 * 109.91858 * 118.12788 * 12 11 9 27 27 H 1.08993 * 109.91978 * 239.22756 * 12 11 9 28 28 H 1.08993 * 109.47595 * 284.49507 * 14 13 12 29 29 H 1.09007 * 109.46361 * 44.49219 * 14 13 12 30 30 H 1.08002 * 119.60575 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.41098 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.78882 * 180.02562 * 19 18 17 33 33 H 1.09007 * 110.67053 * 202.35994 * 22 13 12 34 34 H 1.09001 * 110.66730 * 79.22961 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 3.5466 1.4403 0.7000 6 1 1.4465 2.6527 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8962 -0.7104 0.8968 11 6 4.0581 -0.5028 -1.2714 12 6 5.2702 -1.3501 -1.7005 13 7 5.4132 -2.4369 -0.7076 14 6 5.9023 -3.6684 -1.3416 15 6 6.3945 -4.6185 -0.2805 16 7 5.5888 -5.5553 0.1803 17 6 5.9761 -6.4086 1.1079 18 6 7.2529 -6.3504 1.6342 19 6 8.1293 -5.3795 1.1753 20 6 7.6880 -4.5017 0.1952 21 17 8.7443 -3.2704 -0.4228 22 6 4.0599 -2.6373 -0.1290 23 1 -0.4850 0.8400 0.0004 24 1 3.3015 -0.5003 -2.0560 25 1 4.3690 0.5168 -1.0434 26 1 5.0966 -1.7721 -2.6904 27 1 6.1688 -0.7334 -1.7124 28 1 5.0917 -4.1361 -1.9004 29 1 6.7200 -3.4272 -2.0209 30 1 5.2877 -7.1626 1.4601 31 1 7.5638 -7.0528 2.3934 32 1 9.1330 -5.3106 1.5680 33 1 4.1265 -3.1117 0.8502 34 1 3.4374 -3.2272 -0.8018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703853630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:00 Heat of formation + Delta-G solvation = 37.396907 kcal Electronic energy + Delta-G solvation = -17834.035186 eV Core-core repulsion = 14985.714795 eV Total energy + Delta-G solvation = -2848.320390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37753 -38.11005 -36.60548 -33.72391 -32.51854 -31.90486 -30.14704 -28.34253 -26.26936 -23.97945 -23.61817 -21.89820 -20.37292 -19.50598 -17.15111 -16.76836 -16.56367 -15.92518 -15.51526 -14.70173 -14.30240 -13.85316 -13.66085 -13.54298 -13.05402 -12.65061 -12.57591 -12.35798 -12.00971 -11.49906 -11.43259 -11.24238 -10.86050 -10.63341 -10.49525 -9.97779 -9.88719 -9.75114 -9.54392 -9.45093 -8.96259 -8.88885 -8.52551 -7.91055 -6.04366 -4.03438 0.85870 1.04961 2.04647 3.31780 3.40909 3.44678 3.54471 4.16425 4.45598 4.53573 4.63429 4.75376 4.84999 5.20114 5.26040 5.32655 5.42756 5.56764 5.75834 5.79448 5.84935 5.94758 6.03550 6.27192 6.34695 6.40823 6.62907 6.81247 6.85220 7.06152 7.34373 7.49612 7.62272 7.83428 7.87419 8.56179 8.99288 9.58509 11.08831 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.005412 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.640354 B = 5172.907464 C = 5774.563319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.294 1.294 7 C -0.510 4.510 8 H 0.074 0.926 9 C 0.016 3.984 10 H 0.037 0.963 11 C -0.141 4.141 12 C 0.045 3.955 13 N -0.514 5.514 14 C 0.088 3.912 15 C 0.163 3.837 16 N -0.461 5.461 17 C 0.104 3.896 18 C -0.169 4.169 19 C -0.071 4.071 20 C -0.071 4.071 21 Cl -0.050 7.050 22 C 0.059 3.941 23 H 0.263 0.737 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.064 0.936 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.816 -10.712 -0.060 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.221 1.221 7 C -0.548 4.548 8 H 0.092 0.908 9 C -0.004 4.004 10 H 0.055 0.945 11 C -0.179 4.179 12 C -0.082 4.082 13 N -0.239 5.239 14 C -0.041 4.041 15 C 0.023 3.977 16 N -0.170 5.170 17 C -0.054 4.054 18 C -0.190 4.190 19 C -0.098 4.098 20 C -0.101 4.101 21 Cl -0.021 7.021 22 C -0.068 4.068 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.179 0.821 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.279 -10.403 -0.071 20.169 hybrid contribution 0.787 0.805 -0.251 1.153 sum 18.066 -9.598 -0.322 20.460 Atomic orbital electron populations 1.69907 1.06296 1.26889 1.51003 1.24970 0.94618 0.98971 0.94399 0.86914 0.80180 0.83643 0.78447 1.20347 1.18803 1.22119 1.20970 0.88501 0.94504 1.50807 0.90819 1.20052 0.96213 0.90965 0.93174 0.94462 1.22902 0.95793 0.97955 1.01242 1.22759 0.99023 0.93219 0.93235 1.64723 1.26436 1.03656 1.29051 1.21142 1.00541 0.89991 0.92435 1.21151 0.87931 0.93055 0.95515 1.67711 1.35044 1.03272 1.10999 1.22891 0.94387 0.96168 0.91940 1.22117 0.95018 0.99808 1.02017 1.21503 1.00721 0.93278 0.94288 1.21826 0.93594 0.94620 1.00036 1.98370 1.64506 1.53008 1.86201 1.23195 0.85933 0.99132 0.98492 0.92717 0.91107 0.93167 0.94456 0.91460 0.92242 0.89434 0.82146 0.84121 0.84040 0.91720 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.88 21.99 24.72 -169.99 -4.20 17.79 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.26 -6.38 6.38 56.52 0.36 -6.02 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.51 -14.46 9.00 -34.45 -0.31 -14.77 16 8 H 0.07 2.27 8.03 -52.49 -0.42 1.85 16 9 C 0.02 0.37 2.46 -89.91 -0.22 0.15 16 10 H 0.04 0.94 7.36 -51.93 -0.38 0.56 16 11 C -0.14 -3.04 4.69 -25.37 -0.12 -3.16 16 12 C 0.05 0.81 6.61 -2.76 -0.02 0.79 16 13 N -0.51 -9.42 5.20 -231.90 -1.21 -10.63 16 14 C 0.09 1.38 4.53 -4.98 -0.02 1.35 16 15 C 0.16 2.44 6.06 -82.55 -0.50 1.94 16 16 N -0.46 -6.92 10.27 -9.45 -0.10 -7.01 16 17 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 18 C -0.17 -1.60 10.11 -39.45 -0.40 -2.00 16 19 C -0.07 -0.75 9.98 -39.25 -0.39 -1.14 16 20 C -0.07 -0.93 6.34 -39.36 -0.25 -1.18 16 21 Cl -0.05 -0.62 27.43 -51.86 -1.42 -2.04 16 22 C 0.06 1.26 5.69 -1.90 -0.01 1.25 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.07 1.60 7.80 -51.93 -0.41 1.20 16 25 H 0.05 1.07 5.94 -51.92 -0.31 0.76 16 26 H 0.04 0.61 7.77 -51.93 -0.40 0.21 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.96 7.71 -51.93 -0.40 0.56 16 29 H 0.09 1.22 6.99 -51.92 -0.36 0.85 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.05 1.02 7.64 -51.93 -0.40 0.62 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -31.37 292.29 -8.65 -40.03 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.37 Total: -1.69 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.54 Total: -13.79 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.53 Total: -44.70 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.20 Total: 17.79 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.42 Total: -2.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.37 -8.65 -40.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703853630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.423 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds