Wall clock time and date at job start Mon Mar 30 2020 08:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99431 * 2 1 4 4 H 1.48500 * 109.47014 * 270.00077 * 3 2 1 5 5 H 1.48501 * 109.46590 * 150.00339 * 3 2 1 6 6 H 1.48496 * 109.47090 * 30.00371 * 3 2 1 7 7 C 1.37870 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00005 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00354 * 179.97438 * 7 2 1 10 10 H 1.08999 * 110.64471 * 61.68785 * 9 7 2 11 11 C 1.54599 * 110.72129 * 298.54095 * 9 7 2 12 12 C 1.53990 * 105.14340 * 219.68194 * 11 9 7 13 13 N 1.47902 * 107.05672 * 358.77530 * 12 11 9 14 14 C 1.46900 * 111.00346 * 145.83937 * 13 12 11 15 15 C 1.50694 * 109.47269 * 164.48724 * 14 13 12 16 16 N 1.31878 * 119.62767 * 95.35657 * 15 14 13 17 17 C 1.31851 * 121.74185 * 179.97438 * 16 15 14 18 18 C 1.38230 * 120.79334 * 359.97438 * 17 16 15 19 19 C 1.38611 * 119.17217 * 0.02562 * 18 17 16 20 20 C 1.38314 * 119.63098 * 275.08333 * 15 14 13 21 21 Cl 1.73600 * 120.42914 * 359.97438 * 20 15 14 22 22 C 1.48531 * 105.81918 * 25.32847 * 13 12 11 23 23 H 0.96993 * 120.00211 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.30917 * 338.60004 * 11 9 7 25 25 H 1.09007 * 110.31145 * 100.66637 * 11 9 7 26 26 H 1.09001 * 109.91858 * 118.12788 * 12 11 9 27 27 H 1.08993 * 109.91978 * 239.22756 * 12 11 9 28 28 H 1.08993 * 109.47595 * 284.49507 * 14 13 12 29 29 H 1.09007 * 109.46361 * 44.49219 * 14 13 12 30 30 H 1.08002 * 119.60575 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.41098 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.78882 * 180.02562 * 19 18 17 33 33 H 1.09007 * 110.67053 * 202.35994 * 22 13 12 34 34 H 1.09001 * 110.66730 * 79.22961 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 3.5466 1.4403 0.7000 6 1 1.4465 2.6527 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8962 -0.7104 0.8968 11 6 4.0581 -0.5028 -1.2714 12 6 5.2702 -1.3501 -1.7005 13 7 5.4132 -2.4369 -0.7076 14 6 5.9023 -3.6684 -1.3416 15 6 6.3945 -4.6185 -0.2805 16 7 5.5888 -5.5553 0.1803 17 6 5.9761 -6.4086 1.1079 18 6 7.2529 -6.3504 1.6342 19 6 8.1293 -5.3795 1.1753 20 6 7.6880 -4.5017 0.1952 21 17 8.7443 -3.2704 -0.4228 22 6 4.0599 -2.6373 -0.1290 23 1 -0.4850 0.8400 0.0004 24 1 3.3015 -0.5003 -2.0560 25 1 4.3690 0.5168 -1.0434 26 1 5.0966 -1.7721 -2.6904 27 1 6.1688 -0.7334 -1.7124 28 1 5.0917 -4.1361 -1.9004 29 1 6.7200 -3.4272 -2.0209 30 1 5.2877 -7.1626 1.4601 31 1 7.5638 -7.0528 2.3934 32 1 9.1330 -5.3106 1.5680 33 1 4.1265 -3.1117 0.8502 34 1 3.4374 -3.2272 -0.8018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703853630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:00 Heat of formation + Delta-G solvation = 15.617252 kcal Electronic energy + Delta-G solvation = -17834.979622 eV Core-core repulsion = 14985.714795 eV Total energy + Delta-G solvation = -2849.264827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33673 -39.66183 -37.53688 -35.39513 -33.96406 -33.14040 -31.57697 -29.99841 -27.71974 -25.74472 -24.51157 -23.04884 -21.89041 -21.39099 -18.76821 -17.99580 -17.69199 -17.10466 -16.94087 -16.31525 -15.80065 -15.22277 -14.99507 -14.74286 -14.56386 -14.17089 -14.06657 -13.50174 -13.13181 -13.00410 -12.94444 -12.72983 -12.42020 -12.36313 -11.92284 -11.78046 -11.65661 -11.36360 -11.03796 -10.76271 -10.72948 -10.48109 -9.83216 -9.38365 -8.30309 -6.34819 -0.04556 0.19250 1.11781 1.33246 1.37147 1.48135 2.34467 2.58722 3.04210 3.12747 3.43189 3.61683 3.86757 3.94954 4.03762 4.09419 4.25980 4.39979 4.46256 4.49458 4.52632 4.70389 4.78988 4.85300 4.98208 5.05526 5.06724 5.15962 5.26887 5.57188 5.58234 5.61356 5.91618 6.07961 6.32122 6.70654 6.94357 7.30950 8.86604 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.005412 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.640354 B = 5172.907464 C = 5774.563319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.016 3.984 3 Si 0.945 3.055 4 H -0.260 1.260 5 H -0.248 1.248 6 H -0.294 1.294 7 C -0.517 4.517 8 H 0.030 0.970 9 C 0.010 3.990 10 H 0.030 0.970 11 C -0.138 4.138 12 C 0.049 3.951 13 N -0.511 5.511 14 C 0.091 3.909 15 C 0.133 3.867 16 N -0.499 5.499 17 C 0.089 3.911 18 C -0.150 4.150 19 C -0.071 4.071 20 C -0.081 4.081 21 Cl -0.049 7.049 22 C 0.077 3.923 23 H 0.266 0.734 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.171 0.829 33 H 0.054 0.946 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.996 -10.704 0.323 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.181 4.181 3 Si 0.770 3.230 4 H -0.185 1.185 5 H -0.172 1.172 6 H -0.221 1.221 7 C -0.555 4.555 8 H 0.048 0.952 9 C -0.009 4.009 10 H 0.048 0.952 11 C -0.176 4.176 12 C -0.078 4.078 13 N -0.235 5.235 14 C -0.037 4.037 15 C -0.005 4.005 16 N -0.210 5.210 17 C -0.068 4.068 18 C -0.170 4.170 19 C -0.097 4.097 20 C -0.110 4.110 21 Cl -0.020 7.020 22 C -0.051 4.051 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.201 0.799 31 H 0.200 0.800 32 H 0.189 0.811 33 H 0.073 0.927 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 20.485 -10.410 0.300 22.980 hybrid contribution -0.234 0.628 -0.306 0.736 sum 20.251 -9.782 -0.006 22.489 Atomic orbital electron populations 1.70055 1.08258 1.28096 1.52671 1.25846 0.95373 1.02989 0.93920 0.85866 0.79205 0.78486 0.79482 1.18469 1.17172 1.22055 1.21199 0.90984 0.92950 1.50364 0.95215 1.19967 0.93361 0.93308 0.94293 0.95209 1.22763 0.96897 0.98841 0.99144 1.22787 0.98352 0.92906 0.93745 1.64704 1.23840 1.05149 1.29836 1.21147 1.00532 0.88968 0.93095 1.20993 0.89068 0.93853 0.96628 1.67627 1.36266 1.04396 1.12663 1.23416 0.96034 0.96009 0.91319 1.22555 0.93619 0.99394 1.01437 1.21932 1.02181 0.92449 0.93177 1.21934 0.93037 0.95304 1.00763 1.98363 1.64199 1.53122 1.86323 1.22830 0.87428 0.96897 0.97924 0.92488 0.92638 0.92323 0.92828 0.88788 0.93501 0.87557 0.79920 0.80005 0.81114 0.92726 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.94 45.24 24.72 68.60 1.70 46.94 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.25 -11.18 6.38 99.48 0.63 -10.54 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.52 -30.45 9.00 25.60 0.23 -30.22 16 8 H 0.03 1.95 8.03 -2.91 -0.02 1.92 16 9 C 0.01 0.50 2.46 -10.34 -0.03 0.47 16 10 H 0.03 1.49 7.36 -2.39 -0.02 1.48 16 11 C -0.14 -5.79 4.69 31.47 0.15 -5.64 16 12 C 0.05 1.67 6.61 86.44 0.57 2.24 16 13 N -0.51 -18.20 5.20 -887.60 -4.61 -22.82 16 14 C 0.09 2.79 4.53 85.55 0.39 3.17 16 15 C 0.13 3.86 6.06 42.57 0.26 4.12 16 16 N -0.50 -14.77 10.27 -183.80 -1.89 -16.66 16 17 C 0.09 1.88 11.18 84.69 0.95 2.83 16 18 C -0.15 -2.31 10.11 22.36 0.23 -2.09 16 19 C -0.07 -1.26 9.98 22.49 0.22 -1.04 16 20 C -0.08 -1.95 6.34 22.42 0.14 -1.81 16 21 Cl -0.05 -1.11 27.43 -2.72 -0.07 -1.18 16 22 C 0.08 3.33 5.69 86.65 0.49 3.83 16 23 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.05 2.47 7.80 -2.39 -0.02 2.46 16 25 H 0.06 2.34 5.94 -2.38 -0.01 2.33 16 26 H 0.05 1.64 7.77 -2.39 -0.02 1.62 16 27 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.05 1.54 7.71 -2.39 -0.02 1.52 16 29 H 0.11 2.78 6.99 -2.38 -0.02 2.76 16 30 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.03 1.26 7.64 -2.39 -0.02 1.24 16 Total: -1.00 -70.49 292.29 0.51 -69.98 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.02 Total: 6.65 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.06 Total: -22.74 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -6.20 Total: -99.65 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.70 Total: 46.94 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.07 Total: -1.18 kcal Total: -70.49 0.51 -69.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703853630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.594 kcal (2) G-P(sol) polarization free energy of solvation -70.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds