Wall clock time and date at job start Mon Mar 30 2020 08:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 300.00064 * 3 2 1 6 6 H 1.48500 * 109.47387 * 59.99949 * 3 2 1 7 7 C 1.37877 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99689 * 175.14300 * 7 2 1 9 9 C 1.50696 * 119.99957 * 355.42608 * 7 2 1 10 10 C 1.53003 * 115.54453 * 274.92366 * 9 7 2 11 11 N 1.46895 * 109.47038 * 296.30160 * 10 9 7 12 12 C 1.46910 * 110.99971 * 174.87619 * 11 10 9 13 13 C 1.50700 * 109.47012 * 180.02562 * 12 11 10 14 14 C 1.38237 * 120.40850 * 269.72198 * 13 12 11 15 15 N 1.31855 * 120.78947 * 179.70590 * 14 13 12 16 16 C 1.31869 * 121.73890 * 0.58382 * 15 14 13 17 17 C 1.38307 * 120.74774 * 359.70369 * 16 15 14 18 18 Cl 1.73596 * 120.43416 * 179.97438 * 17 16 15 19 19 C 1.38604 * 120.41766 * 90.00288 * 13 12 11 20 20 C 1.52992 * 117.50274 * 129.25327 * 9 7 2 21 21 C 1.52997 * 117.50316 * 60.59202 * 9 7 2 22 22 H 0.97010 * 119.99605 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47377 * 56.31067 * 10 9 7 24 24 H 1.09010 * 109.46900 * 176.30945 * 10 9 7 25 25 H 1.00901 * 111.00867 * 298.83269 * 11 10 9 26 26 H 1.08991 * 109.47043 * 300.00189 * 12 11 10 27 27 H 1.09002 * 109.46570 * 60.00438 * 12 11 10 28 28 H 1.07999 * 119.60669 * 359.97438 * 14 13 12 29 29 H 1.08003 * 119.62883 * 179.68550 * 16 15 14 30 30 H 1.08005 * 120.78648 * 359.97380 * 19 13 12 31 31 H 1.08998 * 117.49867 * 359.97438 * 20 9 7 32 32 H 1.09002 * 117.49985 * 145.01605 * 20 9 7 33 33 H 1.09005 * 117.50012 * 214.98240 * 21 9 7 34 34 H 1.09000 * 117.49705 * 359.97308 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9526 1.5267 11 7 2.1624 -3.2129 2.2640 12 6 1.8832 -3.5357 3.6698 13 6 3.1798 -3.7953 4.3926 14 6 3.7037 -5.0731 4.4527 15 7 4.8405 -5.3078 5.0782 16 6 5.5142 -4.3454 5.6771 17 6 5.0493 -3.0429 5.6641 18 17 5.9424 -1.7824 6.4558 19 6 3.8590 -2.7569 5.0103 20 6 1.5729 -3.5802 -0.9272 21 6 0.2452 -2.8218 -0.9977 22 1 -0.4850 0.8402 -0.0004 23 1 0.3521 -2.1721 2.0341 24 1 0.3236 -3.8649 1.4847 25 1 2.6970 -3.9468 1.8239 26 1 1.3673 -2.6982 4.1392 27 1 1.2543 -4.4245 3.7204 28 1 3.1778 -5.8883 3.9780 29 1 6.4395 -4.5769 6.1839 30 1 3.4713 -1.7492 4.9831 31 1 2.3244 -3.3504 -1.6825 32 1 1.5428 -4.6176 -0.5939 33 1 -0.6579 -3.3605 -0.7108 34 1 0.1232 -2.0928 -1.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705455033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:07 Heat of formation + Delta-G solvation = 50.622108 kcal Electronic energy + Delta-G solvation = -17297.931984 eV Core-core repulsion = 14450.185082 eV Total energy + Delta-G solvation = -2847.746903 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32507 -37.15395 -36.71370 -34.99891 -32.29065 -31.81946 -31.10572 -26.78216 -25.36215 -23.74046 -23.54628 -21.71996 -20.95315 -19.03871 -17.30054 -16.83161 -16.30092 -15.66478 -14.95848 -14.58161 -14.41881 -13.81763 -13.69883 -13.45752 -13.19976 -12.89633 -12.21600 -12.10569 -11.83312 -11.60975 -11.28104 -11.21237 -10.90826 -10.70551 -10.43268 -10.16062 -9.75957 -9.63956 -9.36753 -8.99679 -8.90787 -8.34671 -8.05227 -7.68925 -5.95759 -3.97950 0.83279 1.10013 1.92697 3.32625 3.41114 3.46581 3.56765 4.30082 4.47379 4.60466 4.67861 4.86205 4.92572 5.08004 5.33399 5.39083 5.45403 5.60374 5.84191 5.87399 6.10597 6.22236 6.27730 6.41564 6.45499 6.56502 6.73831 6.83302 7.14562 7.48002 7.51857 7.72672 7.82919 7.96658 8.01721 8.54319 9.01716 9.65508 11.13374 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.018020 B = 0.005303 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.467159 B = 5279.078573 C = 6435.693970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.466 4.466 8 H 0.059 0.941 9 C 0.047 3.953 10 C 0.108 3.892 11 N -0.663 5.663 12 C 0.099 3.901 13 C -0.106 4.106 14 C 0.103 3.897 15 N -0.471 5.471 16 C 0.103 3.897 17 C -0.088 4.088 18 Cl -0.060 7.060 19 C -0.044 4.044 20 C -0.217 4.217 21 C -0.151 4.151 22 H 0.256 0.744 23 H 0.074 0.926 24 H -0.001 1.001 25 H 0.333 0.667 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 -7.541 11.122 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.505 4.505 8 H 0.077 0.923 9 C 0.046 3.954 10 C -0.021 4.021 11 N -0.293 5.293 12 C -0.031 4.031 13 C -0.108 4.108 14 C -0.054 4.054 15 N -0.179 5.179 16 C -0.055 4.055 17 C -0.117 4.117 18 Cl -0.032 7.032 19 C -0.071 4.071 20 C -0.254 4.254 21 C -0.189 4.189 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.017 0.983 25 H 0.150 0.850 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.166 0.834 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.439 -7.483 11.336 15.032 hybrid contribution -0.233 1.090 -0.074 1.117 sum 6.206 -6.393 11.262 14.360 Atomic orbital electron populations 1.70027 1.05764 1.26005 1.50706 1.24934 0.94763 0.98732 0.95077 0.86614 0.80389 0.84103 0.77338 1.19755 1.21363 1.21156 1.20327 0.92562 0.88371 1.49194 0.92317 1.18835 0.97872 0.93148 0.85564 1.21574 0.88187 0.96598 0.95701 1.60344 1.22104 1.47560 0.99327 1.20856 0.91079 1.00184 0.91005 1.20977 0.98619 0.93393 0.97838 1.22802 0.91670 0.95882 0.95049 1.67808 1.07315 1.34567 1.08238 1.22699 0.99373 0.86776 0.96633 1.22110 0.96227 0.91316 1.02058 1.98377 1.74486 1.51645 1.78654 1.21526 0.91962 1.00804 0.92788 1.22998 1.00656 0.95432 1.06301 1.22494 0.90552 1.01509 1.04370 0.93389 0.90781 0.98305 0.84971 0.89877 0.94606 0.82370 0.82182 0.83381 0.90561 0.92252 0.92284 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 12.65 55.43 0.70 -24.10 16 2 C 0.07 1.80 5.43 -17.82 -0.10 1.71 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.47 -12.48 8.71 -34.44 -0.30 -12.78 16 8 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 9 C 0.05 1.10 1.64 -155.67 -0.25 0.85 16 10 C 0.11 2.24 5.51 -3.83 -0.02 2.22 16 11 N -0.66 -11.92 6.34 -115.05 -0.73 -12.65 16 12 C 0.10 1.41 5.83 -4.97 -0.03 1.38 16 13 C -0.11 -1.40 5.41 -104.49 -0.57 -1.96 16 14 C 0.10 1.28 10.86 -17.54 -0.19 1.09 16 15 N -0.47 -6.14 10.36 -13.22 -0.14 -6.28 16 16 C 0.10 1.23 10.99 -17.51 -0.19 1.03 16 17 C -0.09 -1.09 6.34 -39.36 -0.25 -1.34 16 18 Cl -0.06 -0.69 28.99 -51.86 -1.50 -2.19 16 19 C -0.04 -0.58 9.67 -39.25 -0.38 -0.96 16 20 C -0.22 -4.60 9.96 -26.70 -0.27 -4.86 16 21 C -0.15 -3.50 9.15 -26.70 -0.24 -3.74 16 22 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 23 H 0.07 1.71 8.13 -51.93 -0.42 1.29 16 24 H 0.00 -0.02 8.10 -51.92 -0.42 -0.44 16 25 H 0.33 5.69 8.78 -39.29 -0.34 5.35 16 26 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 27 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.15 1.95 8.06 -52.48 -0.42 1.52 16 31 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -28.27 312.76 -9.30 -37.57 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.53 Total: 4.02 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.79 Total: -17.37 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.17 Total: -43.03 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.27 -9.30 -37.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705455033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.194 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds