Wall clock time and date at job start Mon Mar 30 2020 08:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 300.00064 * 3 2 1 6 6 H 1.48500 * 109.47387 * 59.99949 * 3 2 1 7 7 C 1.37877 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99689 * 175.14300 * 7 2 1 9 9 C 1.50696 * 119.99957 * 355.42608 * 7 2 1 10 10 C 1.53003 * 115.54453 * 274.92366 * 9 7 2 11 11 N 1.46895 * 109.47038 * 296.30160 * 10 9 7 12 12 C 1.46910 * 110.99971 * 174.87619 * 11 10 9 13 13 C 1.50700 * 109.47012 * 180.02562 * 12 11 10 14 14 C 1.38237 * 120.40850 * 269.72198 * 13 12 11 15 15 N 1.31855 * 120.78947 * 179.70590 * 14 13 12 16 16 C 1.31869 * 121.73890 * 0.58382 * 15 14 13 17 17 C 1.38307 * 120.74774 * 359.70369 * 16 15 14 18 18 Cl 1.73596 * 120.43416 * 179.97438 * 17 16 15 19 19 C 1.38604 * 120.41766 * 90.00288 * 13 12 11 20 20 C 1.52992 * 117.50274 * 129.25327 * 9 7 2 21 21 C 1.52997 * 117.50316 * 60.59202 * 9 7 2 22 22 H 0.97010 * 119.99605 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47377 * 56.31067 * 10 9 7 24 24 H 1.09010 * 109.46900 * 176.30945 * 10 9 7 25 25 H 1.00901 * 111.00867 * 298.83269 * 11 10 9 26 26 H 1.08991 * 109.47043 * 300.00189 * 12 11 10 27 27 H 1.09002 * 109.46570 * 60.00438 * 12 11 10 28 28 H 1.07999 * 119.60669 * 359.97438 * 14 13 12 29 29 H 1.08003 * 119.62883 * 179.68550 * 16 15 14 30 30 H 1.08005 * 120.78648 * 359.97380 * 19 13 12 31 31 H 1.08998 * 117.49867 * 359.97438 * 20 9 7 32 32 H 1.09002 * 117.49985 * 145.01605 * 20 9 7 33 33 H 1.09005 * 117.50012 * 214.98240 * 21 9 7 34 34 H 1.09000 * 117.49705 * 359.97308 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9526 1.5267 11 7 2.1624 -3.2129 2.2640 12 6 1.8832 -3.5357 3.6698 13 6 3.1798 -3.7953 4.3926 14 6 3.7037 -5.0731 4.4527 15 7 4.8405 -5.3078 5.0782 16 6 5.5142 -4.3454 5.6771 17 6 5.0493 -3.0429 5.6641 18 17 5.9424 -1.7824 6.4558 19 6 3.8590 -2.7569 5.0103 20 6 1.5729 -3.5802 -0.9272 21 6 0.2452 -2.8218 -0.9977 22 1 -0.4850 0.8402 -0.0004 23 1 0.3521 -2.1721 2.0341 24 1 0.3236 -3.8649 1.4847 25 1 2.6970 -3.9468 1.8239 26 1 1.3673 -2.6982 4.1392 27 1 1.2543 -4.4245 3.7204 28 1 3.1778 -5.8883 3.9780 29 1 6.4395 -4.5769 6.1839 30 1 3.4713 -1.7492 4.9831 31 1 2.3244 -3.3504 -1.6825 32 1 1.5428 -4.6176 -0.5939 33 1 -0.6579 -3.3605 -0.7108 34 1 0.1232 -2.0928 -1.7989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705455033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:05 Heat of formation + Delta-G solvation = 34.279570 kcal Electronic energy + Delta-G solvation = -17298.640650 eV Core-core repulsion = 14450.185082 eV Total energy + Delta-G solvation = -2848.455568 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.29752 -38.80976 -37.66558 -36.35573 -33.90934 -33.33357 -32.17231 -28.20553 -27.23164 -24.96958 -24.70618 -22.98165 -22.56051 -20.89084 -18.36219 -18.00392 -17.75910 -16.90411 -16.58753 -16.16285 -15.78520 -15.17146 -15.11928 -14.85682 -14.34272 -14.18459 -13.65061 -13.22269 -13.08161 -13.00979 -12.93022 -12.82830 -12.60097 -12.33501 -12.16696 -11.96819 -11.25935 -10.87024 -10.72568 -10.60496 -10.30913 -9.98631 -9.83045 -9.06811 -8.02541 -6.08648 -0.11867 0.10142 0.99044 1.40070 1.44092 1.53925 2.47848 2.58784 3.27476 3.32829 3.46082 3.66608 3.73407 3.78381 3.92507 4.04080 4.37673 4.41540 4.58155 4.63091 4.72838 4.76052 4.84485 4.90910 5.02960 5.08976 5.20031 5.34273 5.46620 5.70975 5.73665 5.89548 6.31339 6.51126 6.70535 6.78366 6.94948 7.56583 9.05803 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.018020 B = 0.005303 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.467159 B = 5279.078573 C = 6435.693970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.475 4.475 8 H 0.044 0.956 9 C 0.020 3.980 10 C 0.124 3.876 11 N -0.677 5.677 12 C 0.105 3.895 13 C -0.113 4.113 14 C 0.107 3.893 15 N -0.485 5.485 16 C 0.106 3.894 17 C -0.093 4.093 18 Cl -0.053 7.053 19 C -0.056 4.056 20 C -0.189 4.189 21 C -0.160 4.160 22 H 0.255 0.745 23 H 0.043 0.957 24 H 0.018 0.982 25 H 0.340 0.660 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.181 0.819 29 H 0.185 0.815 30 H 0.142 0.858 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.942 -8.820 11.841 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.019 3.981 10 C -0.005 4.005 11 N -0.308 5.308 12 C -0.024 4.024 13 C -0.116 4.116 14 C -0.050 4.050 15 N -0.193 5.193 16 C -0.051 4.051 17 C -0.122 4.122 18 Cl -0.025 7.025 19 C -0.083 4.083 20 C -0.226 4.226 21 C -0.198 4.198 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.158 0.842 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.198 0.802 29 H 0.202 0.798 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.314 -8.768 12.060 16.607 hybrid contribution -0.444 1.468 -0.279 1.559 sum 6.870 -7.300 11.781 15.468 Atomic orbital electron populations 1.70114 1.06700 1.26415 1.51898 1.25513 0.95449 1.01313 0.95281 0.85796 0.79248 0.81063 0.77221 1.19719 1.21171 1.20982 1.20536 0.92080 0.90176 1.48519 0.93795 1.18986 0.98408 0.93186 0.87528 1.21194 0.89209 0.96287 0.93830 1.60183 1.21058 1.48650 1.00905 1.20796 0.92067 1.00792 0.88793 1.20859 0.98370 0.93881 0.98447 1.23118 0.91440 0.96044 0.94395 1.67890 1.07688 1.34928 1.08782 1.23104 0.99846 0.86320 0.95864 1.22146 0.96057 0.91849 1.02143 1.98379 1.74219 1.51417 1.78468 1.21617 0.92589 1.00767 0.93328 1.22978 0.98755 0.96414 1.04496 1.22386 0.92000 1.01808 1.03596 0.93555 0.93862 0.96388 0.84214 0.90802 0.92300 0.80192 0.79823 0.83987 0.91113 0.88967 0.90917 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.69 12.65 21.45 0.27 -51.42 16 2 C 0.02 1.27 5.43 84.65 0.46 1.73 16 3 Si 0.94 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.47 -25.54 8.71 25.60 0.22 -25.31 16 8 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 9 C 0.02 0.92 1.64 -52.93 -0.09 0.83 16 10 C 0.12 5.03 5.51 86.31 0.48 5.51 16 11 N -0.68 -23.41 6.34 -517.91 -3.28 -26.69 16 12 C 0.10 2.83 5.83 85.55 0.50 3.33 16 13 C -0.11 -2.80 5.41 -19.78 -0.11 -2.91 16 14 C 0.11 2.40 10.86 84.69 0.92 3.32 16 15 N -0.48 -11.49 10.36 -195.74 -2.03 -13.52 16 16 C 0.11 2.30 10.99 84.70 0.93 3.23 16 17 C -0.09 -2.16 6.34 22.42 0.14 -2.02 16 18 Cl -0.05 -1.15 28.99 -2.72 -0.08 -1.23 16 19 C -0.06 -1.44 9.67 22.49 0.22 -1.22 16 20 C -0.19 -7.68 9.96 30.61 0.30 -7.38 16 21 C -0.16 -7.31 9.15 30.62 0.28 -7.03 16 22 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 23 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 24 H 0.02 0.66 8.10 -2.38 -0.02 0.64 16 25 H 0.34 10.89 8.78 -89.69 -0.79 10.10 16 26 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 27 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 28 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 29 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 34 H 0.05 2.83 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -59.67 312.76 1.48 -58.19 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.31 Total: 16.45 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 4.26 Total: -27.93 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -5.04 Total: -91.63 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -59.67 1.48 -58.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705455033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.475 kcal (2) G-P(sol) polarization free energy of solvation -59.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds