Wall clock time and date at job start Mon Mar 30 2020 08:05:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86797 * 120.00098 * 2 1
4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47232 * 300.00064 * 3 2 1
6 6 H 1.48500 * 109.47387 * 59.99949 * 3 2 1
7 7 C 1.37877 * 119.99940 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99689 * 175.14300 * 7 2 1
9 9 C 1.50696 * 119.99957 * 355.42608 * 7 2 1
10 10 C 1.53003 * 115.54453 * 274.92366 * 9 7 2
11 11 N 1.46895 * 109.47038 * 296.30160 * 10 9 7
12 12 C 1.46910 * 110.99971 * 174.87619 * 11 10 9
13 13 C 1.50700 * 109.47012 * 180.02562 * 12 11 10
14 14 C 1.38237 * 120.40850 * 269.72198 * 13 12 11
15 15 N 1.31855 * 120.78947 * 179.70590 * 14 13 12
16 16 C 1.31869 * 121.73890 * 0.58382 * 15 14 13
17 17 C 1.38307 * 120.74774 * 359.70369 * 16 15 14
18 18 Cl 1.73596 * 120.43416 * 179.97438 * 17 16 15
19 19 C 1.38604 * 120.41766 * 90.00288 * 13 12 11
20 20 C 1.52992 * 117.50274 * 129.25327 * 9 7 2
21 21 C 1.52997 * 117.50316 * 60.59202 * 9 7 2
22 22 H 0.97010 * 119.99605 * 0.02562 * 1 2 3
23 23 H 1.08996 * 109.47377 * 56.31067 * 10 9 7
24 24 H 1.09010 * 109.46900 * 176.30945 * 10 9 7
25 25 H 1.00901 * 111.00867 * 298.83269 * 11 10 9
26 26 H 1.08991 * 109.47043 * 300.00189 * 12 11 10
27 27 H 1.09002 * 109.46570 * 60.00438 * 12 11 10
28 28 H 1.07999 * 119.60669 * 359.97438 * 14 13 12
29 29 H 1.08003 * 119.62883 * 179.68550 * 16 15 14
30 30 H 1.08005 * 120.78648 * 359.97380 * 19 13 12
31 31 H 1.08998 * 117.49867 * 359.97438 * 20 9 7
32 32 H 1.09002 * 117.49985 * 145.01605 * 20 9 7
33 33 H 1.09005 * 117.50012 * 214.98240 * 21 9 7
34 34 H 1.09000 * 117.49705 * 359.97308 * 21 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8905 2.3965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0816 -1.1957 -0.0787
9 6 1.2546 -2.4970 0.1052
10 6 0.9188 -2.9526 1.5267
11 7 2.1624 -3.2129 2.2640
12 6 1.8832 -3.5357 3.6698
13 6 3.1798 -3.7953 4.3926
14 6 3.7037 -5.0731 4.4527
15 7 4.8405 -5.3078 5.0782
16 6 5.5142 -4.3454 5.6771
17 6 5.0493 -3.0429 5.6641
18 17 5.9424 -1.7824 6.4558
19 6 3.8590 -2.7569 5.0103
20 6 1.5729 -3.5802 -0.9272
21 6 0.2452 -2.8218 -0.9977
22 1 -0.4850 0.8402 -0.0004
23 1 0.3521 -2.1721 2.0341
24 1 0.3236 -3.8649 1.4847
25 1 2.6970 -3.9468 1.8239
26 1 1.3673 -2.6982 4.1392
27 1 1.2543 -4.4245 3.7204
28 1 3.1778 -5.8883 3.9780
29 1 6.4395 -4.5769 6.1839
30 1 3.4713 -1.7492 4.9831
31 1 2.3244 -3.3504 -1.6825
32 1 1.5428 -4.6176 -0.5939
33 1 -0.6579 -3.3605 -0.7108
34 1 0.1232 -2.0928 -1.7989
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000705455033.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 08:05:05
Heat of formation + Delta-G solvation = 34.279570 kcal
Electronic energy + Delta-G solvation = -17298.640650 eV
Core-core repulsion = 14450.185082 eV
Total energy + Delta-G solvation = -2848.455568 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.088 amu
Computer time = 1.52 seconds
Orbital eigenvalues (eV)
-41.29752 -38.80976 -37.66558 -36.35573 -33.90934 -33.33357 -32.17231 -28.20553
-27.23164 -24.96958 -24.70618 -22.98165 -22.56051 -20.89084 -18.36219 -18.00392
-17.75910 -16.90411 -16.58753 -16.16285 -15.78520 -15.17146 -15.11928 -14.85682
-14.34272 -14.18459 -13.65061 -13.22269 -13.08161 -13.00979 -12.93022 -12.82830
-12.60097 -12.33501 -12.16696 -11.96819 -11.25935 -10.87024 -10.72568 -10.60496
-10.30913 -9.98631 -9.83045 -9.06811 -8.02541 -6.08648 -0.11867 0.10142
0.99044 1.40070 1.44092 1.53925 2.47848 2.58784 3.27476 3.32829
3.46082 3.66608 3.73407 3.78381 3.92507 4.04080 4.37673 4.41540
4.58155 4.63091 4.72838 4.76052 4.84485 4.90910 5.02960 5.08976
5.20031 5.34273 5.46620 5.70975 5.73665 5.89548 6.31339 6.51126
6.70535 6.78366 6.94948 7.56583 9.05803
Molecular weight = 266.09amu
Principal moments of inertia in cm(-1)
A = 0.018020 B = 0.005303 C = 0.004350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1553.467159 B = 5279.078573 C = 6435.693970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.023 3.977
3 Si 0.939 3.061
4 H -0.273 1.273
5 H -0.285 1.285
6 H -0.284 1.284
7 C -0.475 4.475
8 H 0.044 0.956
9 C 0.020 3.980
10 C 0.124 3.876
11 N -0.677 5.677
12 C 0.105 3.895
13 C -0.113 4.113
14 C 0.107 3.893
15 N -0.485 5.485
16 C 0.106 3.894
17 C -0.093 4.093
18 Cl -0.053 7.053
19 C -0.056 4.056
20 C -0.189 4.189
21 C -0.160 4.160
22 H 0.255 0.745
23 H 0.043 0.957
24 H 0.018 0.982
25 H 0.340 0.660
26 H 0.074 0.926
27 H 0.059 0.941
28 H 0.181 0.819
29 H 0.185 0.815
30 H 0.142 0.858
31 H 0.070 0.930
32 H 0.092 0.908
33 H 0.072 0.928
34 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.942 -8.820 11.841 16.315
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.551 5.551
2 C -0.176 4.176
3 Si 0.767 3.233
4 H -0.197 1.197
5 H -0.212 1.212
6 H -0.210 1.210
7 C -0.513 4.513
8 H 0.062 0.938
9 C 0.019 3.981
10 C -0.005 4.005
11 N -0.308 5.308
12 C -0.024 4.024
13 C -0.116 4.116
14 C -0.050 4.050
15 N -0.193 5.193
16 C -0.051 4.051
17 C -0.122 4.122
18 Cl -0.025 7.025
19 C -0.083 4.083
20 C -0.226 4.226
21 C -0.198 4.198
22 H 0.064 0.936
23 H 0.061 0.939
24 H 0.036 0.964
25 H 0.158 0.842
26 H 0.092 0.908
27 H 0.077 0.923
28 H 0.198 0.802
29 H 0.202 0.798
30 H 0.160 0.840
31 H 0.089 0.911
32 H 0.110 0.890
33 H 0.091 0.909
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 7.314 -8.768 12.060 16.607
hybrid contribution -0.444 1.468 -0.279 1.559
sum 6.870 -7.300 11.781 15.468
Atomic orbital electron populations
1.70114 1.06700 1.26415 1.51898 1.25513 0.95449 1.01313 0.95281
0.85796 0.79248 0.81063 0.77221 1.19719 1.21171 1.20982 1.20536
0.92080 0.90176 1.48519 0.93795 1.18986 0.98408 0.93186 0.87528
1.21194 0.89209 0.96287 0.93830 1.60183 1.21058 1.48650 1.00905
1.20796 0.92067 1.00792 0.88793 1.20859 0.98370 0.93881 0.98447
1.23118 0.91440 0.96044 0.94395 1.67890 1.07688 1.34928 1.08782
1.23104 0.99846 0.86320 0.95864 1.22146 0.96057 0.91849 1.02143
1.98379 1.74219 1.51417 1.78468 1.21617 0.92589 1.00767 0.93328
1.22978 0.98755 0.96414 1.04496 1.22386 0.92000 1.01808 1.03596
0.93555 0.93862 0.96388 0.84214 0.90802 0.92300 0.80192 0.79823
0.83987 0.91113 0.88967 0.90917 0.92634
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.69 12.65 21.45 0.27 -51.42 16
2 C 0.02 1.27 5.43 84.65 0.46 1.73 16
3 Si 0.94 44.12 29.54 68.60 2.03 46.15 16
4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16
5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16
6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16
7 C -0.47 -25.54 8.71 25.60 0.22 -25.31 16
8 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16
9 C 0.02 0.92 1.64 -52.93 -0.09 0.83 16
10 C 0.12 5.03 5.51 86.31 0.48 5.51 16
11 N -0.68 -23.41 6.34 -517.91 -3.28 -26.69 16
12 C 0.10 2.83 5.83 85.55 0.50 3.33 16
13 C -0.11 -2.80 5.41 -19.78 -0.11 -2.91 16
14 C 0.11 2.40 10.86 84.69 0.92 3.32 16
15 N -0.48 -11.49 10.36 -195.74 -2.03 -13.52 16
16 C 0.11 2.30 10.99 84.70 0.93 3.23 16
17 C -0.09 -2.16 6.34 22.42 0.14 -2.02 16
18 Cl -0.05 -1.15 28.99 -2.72 -0.08 -1.23 16
19 C -0.06 -1.44 9.67 22.49 0.22 -1.22 16
20 C -0.19 -7.68 9.96 30.61 0.30 -7.38 16
21 C -0.16 -7.31 9.15 30.62 0.28 -7.03 16
22 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16
23 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16
24 H 0.02 0.66 8.10 -2.38 -0.02 0.64 16
25 H 0.34 10.89 8.78 -89.69 -0.79 10.10 16
26 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16
27 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16
28 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16
29 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16
30 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16
31 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16
32 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16
33 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16
34 H 0.05 2.83 8.14 -2.39 -0.02 2.82 16
Total: -1.00 -59.67 312.76 1.48 -58.19
By element:
Atomic # 1 Polarization: 16.13 SS G_CDS: 0.31 Total: 16.45 kcal
Atomic # 6 Polarization: -32.19 SS G_CDS: 4.26 Total: -27.93 kcal
Atomic # 7 Polarization: -86.59 SS G_CDS: -5.04 Total: -91.63 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal
Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal
Total: -59.67 1.48 -58.19 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705455033.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.475 kcal
(2) G-P(sol) polarization free energy of solvation -59.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.800 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.52 seconds