Wall clock time and date at job start Mon Mar 30 2020 08:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99683 * 2 1 4 4 H 1.48498 * 109.47153 * 239.99403 * 3 2 1 5 5 H 1.48503 * 109.47433 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47179 * 119.99743 * 3 2 1 7 7 C 1.37874 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00164 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46819 * 184.83239 * 9 7 2 11 11 C 1.46903 * 110.99967 * 285.67139 * 10 9 7 12 12 C 1.50703 * 109.47086 * 170.00401 * 11 10 9 13 13 C 1.38238 * 120.40989 * 269.98121 * 12 11 10 14 14 N 1.31852 * 120.79117 * 179.97438 * 13 12 11 15 15 C 1.31882 * 121.74074 * 359.76991 * 14 13 12 16 16 C 1.38311 * 120.74068 * 0.49341 * 15 14 13 17 17 Cl 1.73602 * 120.42686 * 179.77183 * 16 15 14 18 18 C 1.38610 * 120.41692 * 89.99607 * 12 11 10 19 19 C 1.46900 * 110.99827 * 161.71885 * 10 9 7 20 20 C 1.53002 * 117.49851 * 10.86608 * 19 10 9 21 21 C 1.53000 * 59.99946 * 252.51013 * 20 19 10 22 22 H 0.96996 * 120.00620 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47196 * 64.83460 * 9 7 2 24 24 H 1.08999 * 109.46788 * 304.82716 * 9 7 2 25 25 H 1.08996 * 109.46872 * 50.00431 * 11 10 9 26 26 H 1.08999 * 109.46988 * 289.99762 * 11 10 9 27 27 H 1.07994 * 119.60413 * 0.02562 * 13 12 11 28 28 H 1.07990 * 119.62936 * 180.23978 * 15 14 13 29 29 H 1.08006 * 120.78926 * 359.96075 * 18 12 11 30 30 H 1.09001 * 115.54910 * 156.57347 * 19 10 9 31 31 H 1.08991 * 117.49733 * 0.02562 * 20 19 10 32 32 H 1.09004 * 117.49761 * 145.01574 * 20 19 10 33 33 H 1.09005 * 117.49654 * 252.51329 * 21 20 19 34 34 H 1.08998 * 117.52157 * 107.48184 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2015 -3.6131 0.1178 11 6 2.9201 -3.8273 -1.1454 12 6 4.0481 -4.8015 -0.9228 13 6 5.3022 -4.3485 -0.5578 14 7 6.2943 -5.1943 -0.3606 15 6 6.1337 -6.4961 -0.4972 16 6 4.9089 -7.0226 -0.8655 17 17 4.7082 -8.7373 -1.0486 18 6 3.8413 -6.1629 -1.0816 19 6 1.5221 -4.8412 0.5517 20 6 -0.0079 -4.8393 0.5532 21 6 0.7585 -4.7956 1.8767 22 1 -0.4851 0.8400 -0.0004 23 1 0.6913 -2.5956 -0.9298 24 1 0.5609 -2.5201 0.8439 25 1 3.3238 -2.8786 -1.4990 26 1 2.2337 -4.2303 -1.8901 27 1 5.4710 -3.2893 -0.4320 28 1 6.9690 -7.1582 -0.3234 29 1 2.8720 -6.5453 -1.3657 30 1 2.0244 -5.7731 0.2921 31 1 -0.5103 -3.9271 0.2318 32 1 -0.5126 -5.7701 0.2943 33 1 0.7580 -5.6977 2.4886 34 1 0.7605 -3.8545 2.4267 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705873741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:42 Heat of formation + Delta-G solvation = 61.051910 kcal Electronic energy + Delta-G solvation = -17692.351300 eV Core-core repulsion = 14845.056667 eV Total energy + Delta-G solvation = -2847.294633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.29037 -38.12563 -36.70732 -34.16318 -33.01402 -31.85979 -30.81897 -27.27344 -25.33316 -23.69581 -22.69383 -21.95104 -21.72940 -19.09321 -17.10224 -16.91078 -16.55065 -15.77970 -15.35782 -14.89182 -14.32377 -14.07211 -13.65573 -13.23041 -13.05387 -12.73543 -12.20780 -12.08859 -12.01944 -11.48397 -11.31289 -11.03270 -10.90596 -10.80026 -10.71686 -10.26990 -9.95147 -9.80224 -9.64999 -9.45192 -9.23089 -8.80460 -8.48031 -7.26578 -6.09261 -4.11469 0.97452 1.16795 1.94305 3.30033 3.34829 3.37341 3.69141 4.32711 4.39865 4.45406 4.70944 4.75744 4.89313 4.99577 5.23950 5.26888 5.43164 5.47493 5.54288 5.65034 5.86183 5.92007 6.11433 6.12790 6.25168 6.34064 6.53199 6.60930 6.72262 7.13472 7.18779 7.70892 7.88957 7.97670 8.05745 8.41209 8.94816 9.53159 11.01111 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.005231 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.307483 B = 5351.410977 C = 6240.569209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.189 3.811 10 N -0.497 5.497 11 C 0.101 3.899 12 C -0.096 4.096 13 C 0.123 3.877 14 N -0.471 5.471 15 C 0.101 3.899 16 C -0.090 4.090 17 Cl -0.067 7.067 18 C -0.069 4.069 19 C 0.017 3.983 20 C -0.224 4.224 21 C -0.172 4.172 22 H 0.263 0.737 23 H -0.006 1.006 24 H 0.043 0.957 25 H 0.101 0.899 26 H 0.039 0.961 27 H 0.167 0.833 28 H 0.159 0.841 29 H 0.141 0.859 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -13.629 -2.210 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.219 5.219 11 C -0.028 4.028 12 C -0.099 4.099 13 C -0.034 4.034 14 N -0.179 5.179 15 C -0.057 4.057 16 C -0.119 4.119 17 Cl -0.038 7.038 18 C -0.095 4.095 19 C -0.093 4.093 20 C -0.263 4.263 21 C -0.210 4.210 22 H 0.072 0.928 23 H 0.012 0.988 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.184 0.816 28 H 0.176 0.824 29 H 0.158 0.842 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.631 -13.166 -1.638 15.306 hybrid contribution -1.188 0.139 -0.747 1.411 sum 6.443 -13.027 -2.385 14.728 Atomic orbital electron populations 1.69933 1.06064 1.27041 1.50633 1.24964 0.94853 0.99296 0.95279 0.86563 0.79462 0.82703 0.78719 1.20212 1.21371 1.20113 1.21097 0.93487 0.89801 1.50546 0.91893 1.19897 0.90388 0.86757 0.96427 1.62087 1.29167 1.03329 1.27310 1.20961 0.92227 0.97671 0.91903 1.21131 0.97309 0.93782 0.97658 1.22918 0.87733 1.00311 0.92431 1.67872 1.33561 1.02644 1.13795 1.22692 0.94908 0.92083 0.96057 1.22049 0.97042 0.85674 1.07123 1.98363 1.97635 1.11653 1.96170 1.21503 0.98256 0.92534 0.97252 1.22725 0.90574 0.94838 1.01164 1.23581 0.96733 1.03243 1.02724 1.22974 1.04324 1.02814 0.90913 0.92778 0.98817 0.93910 0.88093 0.94263 0.81558 0.82366 0.84167 0.87839 0.87387 0.90066 0.89630 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.51 8.58 -34.44 -0.30 -13.81 16 8 H 0.06 1.63 7.57 -52.49 -0.40 1.23 16 9 C 0.19 4.58 3.37 -4.98 -0.02 4.57 16 10 N -0.50 -9.93 4.64 -229.52 -1.07 -11.00 16 11 C 0.10 1.74 4.97 -4.97 -0.02 1.71 16 12 C -0.10 -1.43 5.02 -104.48 -0.52 -1.96 16 13 C 0.12 1.84 10.86 -17.54 -0.19 1.65 16 14 N -0.47 -6.88 10.36 -13.22 -0.14 -7.01 16 15 C 0.10 1.27 10.99 -17.50 -0.19 1.08 16 16 C -0.09 -1.12 6.34 -39.36 -0.25 -1.37 16 17 Cl -0.07 -0.72 28.99 -51.86 -1.50 -2.23 16 18 C -0.07 -0.91 7.96 -39.25 -0.31 -1.22 16 19 C 0.02 0.30 5.83 -67.71 -0.39 -0.10 16 20 C -0.22 -3.83 9.56 -26.73 -0.26 -4.08 16 21 C -0.17 -2.94 9.91 -26.73 -0.26 -3.20 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 23 H -0.01 -0.15 7.81 -51.93 -0.41 -0.56 16 24 H 0.04 1.12 5.63 -51.93 -0.29 0.83 16 25 H 0.10 1.84 7.16 -51.93 -0.37 1.47 16 26 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 27 H 0.17 2.39 8.06 -52.49 -0.42 1.96 16 28 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.14 1.70 7.47 -52.48 -0.39 1.31 16 30 H 0.10 1.62 5.29 -51.93 -0.27 1.34 16 31 H 0.11 2.14 6.03 -51.93 -0.31 1.83 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.91 7.44 -51.93 -0.39 1.52 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -28.06 300.18 -9.36 -37.42 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.08 Total: 2.56 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.82 Total: -15.26 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.47 Total: -42.91 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.06 -9.36 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705873741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.473 kcal (2) G-P(sol) polarization free energy of solvation -28.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds