Wall clock time and date at job start Mon Mar 30 2020 08:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99683 * 2 1 4 4 H 1.48498 * 109.47153 * 239.99403 * 3 2 1 5 5 H 1.48503 * 109.47433 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47179 * 119.99743 * 3 2 1 7 7 C 1.37874 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00164 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46819 * 184.83239 * 9 7 2 11 11 C 1.46903 * 110.99967 * 285.67139 * 10 9 7 12 12 C 1.50703 * 109.47086 * 170.00401 * 11 10 9 13 13 C 1.38238 * 120.40989 * 269.98121 * 12 11 10 14 14 N 1.31852 * 120.79117 * 179.97438 * 13 12 11 15 15 C 1.31882 * 121.74074 * 359.76991 * 14 13 12 16 16 C 1.38311 * 120.74068 * 0.49341 * 15 14 13 17 17 Cl 1.73602 * 120.42686 * 179.77183 * 16 15 14 18 18 C 1.38610 * 120.41692 * 89.99607 * 12 11 10 19 19 C 1.46900 * 110.99827 * 161.71885 * 10 9 7 20 20 C 1.53002 * 117.49851 * 10.86608 * 19 10 9 21 21 C 1.53000 * 59.99946 * 252.51013 * 20 19 10 22 22 H 0.96996 * 120.00620 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47196 * 64.83460 * 9 7 2 24 24 H 1.08999 * 109.46788 * 304.82716 * 9 7 2 25 25 H 1.08996 * 109.46872 * 50.00431 * 11 10 9 26 26 H 1.08999 * 109.46988 * 289.99762 * 11 10 9 27 27 H 1.07994 * 119.60413 * 0.02562 * 13 12 11 28 28 H 1.07990 * 119.62936 * 180.23978 * 15 14 13 29 29 H 1.08006 * 120.78926 * 359.96075 * 18 12 11 30 30 H 1.09001 * 115.54910 * 156.57347 * 19 10 9 31 31 H 1.08991 * 117.49733 * 0.02562 * 20 19 10 32 32 H 1.09004 * 117.49761 * 145.01574 * 20 19 10 33 33 H 1.09005 * 117.49654 * 252.51329 * 21 20 19 34 34 H 1.08998 * 117.52157 * 107.48184 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2015 -3.6131 0.1178 11 6 2.9201 -3.8273 -1.1454 12 6 4.0481 -4.8015 -0.9228 13 6 5.3022 -4.3485 -0.5578 14 7 6.2943 -5.1943 -0.3606 15 6 6.1337 -6.4961 -0.4972 16 6 4.9089 -7.0226 -0.8655 17 17 4.7082 -8.7373 -1.0486 18 6 3.8413 -6.1629 -1.0816 19 6 1.5221 -4.8412 0.5517 20 6 -0.0079 -4.8393 0.5532 21 6 0.7585 -4.7956 1.8767 22 1 -0.4851 0.8400 -0.0004 23 1 0.6913 -2.5956 -0.9298 24 1 0.5609 -2.5201 0.8439 25 1 3.3238 -2.8786 -1.4990 26 1 2.2337 -4.2303 -1.8901 27 1 5.4710 -3.2893 -0.4320 28 1 6.9690 -7.1582 -0.3234 29 1 2.8720 -6.5453 -1.3657 30 1 2.0244 -5.7731 0.2921 31 1 -0.5103 -3.9271 0.2318 32 1 -0.5126 -5.7701 0.2943 33 1 0.7580 -5.6977 2.4886 34 1 0.7605 -3.8545 2.4267 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705873741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:40 Heat of formation + Delta-G solvation = 44.707711 kcal Electronic energy + Delta-G solvation = -17693.060038 eV Core-core repulsion = 14845.056667 eV Total energy + Delta-G solvation = -2848.003370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.40753 -39.58931 -37.63880 -35.59116 -34.83474 -33.17457 -32.10105 -29.06559 -26.78479 -24.92634 -24.36939 -23.20622 -23.07576 -20.62307 -18.75929 -18.13264 -17.69014 -17.20535 -16.90584 -16.39841 -15.95626 -15.24029 -15.07744 -14.54357 -14.29702 -14.12061 -13.86144 -13.48021 -13.17614 -12.99338 -12.84048 -12.58305 -12.49723 -12.33873 -12.14254 -11.95214 -11.67226 -11.19504 -11.16205 -10.70769 -10.61321 -10.52674 -9.87466 -8.86761 -8.17886 -6.27538 -0.08767 0.09272 0.98121 1.43574 1.45683 1.53198 2.41037 2.57787 2.95679 3.14456 3.35325 3.43457 3.69710 3.71589 3.90169 4.00380 4.06777 4.10726 4.20948 4.47394 4.65568 4.73452 4.78202 4.80299 4.90366 5.06796 5.14752 5.21115 5.30802 5.31598 5.50015 5.67273 6.07458 6.31978 6.59037 6.82160 6.87550 7.41876 8.92074 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.005231 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.307483 B = 5351.410977 C = 6240.569209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.210 3.790 10 N -0.508 5.508 11 C 0.107 3.893 12 C -0.105 4.105 13 C 0.113 3.887 14 N -0.486 5.486 15 C 0.105 3.895 16 C -0.087 4.087 17 Cl -0.046 7.046 18 C -0.064 4.064 19 C 0.012 3.988 20 C -0.219 4.219 21 C -0.170 4.170 22 H 0.263 0.737 23 H -0.032 1.032 24 H 0.016 0.984 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.163 0.837 28 H 0.187 0.813 29 H 0.154 0.846 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 -15.443 -2.245 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.085 3.915 10 N -0.230 5.230 11 C -0.021 4.021 12 C -0.108 4.108 13 C -0.043 4.043 14 N -0.194 5.194 15 C -0.053 4.053 16 C -0.116 4.116 17 Cl -0.017 7.017 18 C -0.091 4.091 19 C -0.098 4.098 20 C -0.258 4.258 21 C -0.208 4.208 22 H 0.072 0.928 23 H -0.015 1.015 24 H 0.034 0.966 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.180 0.820 28 H 0.204 0.796 29 H 0.172 0.828 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.991 -14.995 -1.677 17.564 hybrid contribution -1.582 0.563 -0.744 1.837 sum 7.409 -14.432 -2.421 16.402 Atomic orbital electron populations 1.70065 1.07628 1.27838 1.51830 1.25819 0.95629 1.02892 0.94926 0.85523 0.78211 0.78328 0.79102 1.19064 1.21195 1.19603 1.21469 0.93756 0.91033 1.49881 0.91739 1.19450 0.90237 0.88011 0.93852 1.61947 1.28361 1.03636 1.29013 1.20827 0.92773 0.97781 0.90740 1.20793 0.96330 0.94069 0.99561 1.22895 0.88035 1.00490 0.92899 1.67901 1.33450 1.03579 1.14477 1.23174 0.95885 0.91701 0.94559 1.22049 0.96592 0.86681 1.06258 1.98378 1.97569 1.09788 1.95997 1.21609 0.99229 0.91797 0.96463 1.22896 0.90839 0.94552 1.01466 1.23498 0.96406 1.03119 1.02823 1.23011 1.03982 1.02889 0.90917 0.92804 1.01458 0.96551 0.89844 0.93818 0.82015 0.79637 0.82794 0.85167 0.90935 0.86804 0.86234 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.52 -28.46 8.58 25.60 0.22 -28.24 16 8 H 0.06 3.41 7.57 -2.91 -0.02 3.39 16 9 C 0.21 10.60 3.37 85.56 0.29 10.89 16 10 N -0.51 -20.60 4.64 -880.05 -4.09 -24.68 16 11 C 0.11 3.71 4.97 85.56 0.43 4.13 16 12 C -0.10 -3.02 5.02 -19.77 -0.10 -3.12 16 13 C 0.11 3.31 10.86 84.69 0.92 4.23 16 14 N -0.49 -13.39 10.36 -195.75 -2.03 -15.42 16 15 C 0.10 2.36 10.99 84.70 0.93 3.29 16 16 C -0.09 -1.90 6.34 22.42 0.14 -1.76 16 17 Cl -0.05 -0.84 28.99 -2.72 -0.08 -0.92 16 18 C -0.06 -1.55 7.96 22.49 0.18 -1.37 16 19 C 0.01 0.41 5.83 44.92 0.26 0.67 16 20 C -0.22 -7.41 9.56 30.60 0.29 -7.12 16 21 C -0.17 -5.67 9.91 30.59 0.30 -5.37 16 22 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 23 H -0.03 -1.76 7.81 -2.39 -0.02 -1.78 16 24 H 0.02 0.91 5.63 -2.39 -0.01 0.90 16 25 H 0.08 3.15 7.16 -2.39 -0.02 3.13 16 26 H 0.04 1.46 8.07 -2.39 -0.02 1.44 16 27 H 0.16 4.71 8.06 -2.91 -0.02 4.69 16 28 H 0.19 3.05 8.06 -2.92 -0.02 3.03 16 29 H 0.15 3.26 7.47 -2.91 -0.02 3.24 16 30 H 0.13 3.73 5.29 -2.39 -0.01 3.72 16 31 H 0.07 3.00 6.03 -2.39 -0.01 2.99 16 32 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.12 3.15 8.14 -2.38 -0.02 3.13 16 34 H 0.07 2.76 7.44 -2.39 -0.02 2.74 16 Total: -1.00 -61.15 300.18 1.55 -59.60 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.11 Total: 13.65 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 4.33 Total: -23.00 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -5.83 Total: -94.73 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -61.15 1.55 -59.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705873741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.310 kcal (2) G-P(sol) polarization free energy of solvation -61.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds