Wall clock time and date at job start Mon Mar 30 2020 06:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30507 * 1 3 3 Si 1.86802 * 120.00079 * 2 1 4 4 H 1.48499 * 109.46816 * 264.98642 * 3 2 1 5 5 H 1.48499 * 109.47197 * 24.98055 * 3 2 1 6 6 H 1.48500 * 109.47559 * 144.98747 * 3 2 1 7 7 C 1.40459 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00634 * 186.39928 * 7 2 1 9 9 C 1.40343 * 119.99771 * 6.40340 * 7 2 1 10 10 N 1.33334 * 126.79569 * 186.13959 * 9 7 2 11 11 C 1.33568 * 105.51416 * 179.97438 * 10 9 7 12 12 C 1.50693 * 126.07073 * 179.97438 * 11 10 9 13 13 C 1.52470 * 108.79136 * 28.40850 * 12 11 10 14 14 C 1.54741 * 109.28293 * 57.47098 * 13 12 11 15 15 H 1.08996 * 114.19683 * 196.09435 * 14 13 12 16 16 C 1.54971 * 105.19880 * 322.91744 * 14 13 12 17 17 C 1.52449 * 111.72503 * 81.07572 * 16 14 13 18 18 C 1.54972 * 111.71898 * 0.02562 * 17 16 14 19 19 H 1.08998 * 114.36924 * 152.21713 * 18 17 16 20 20 C 1.53823 * 109.04912 * 151.85544 * 12 11 10 21 21 S 1.84394 * 105.03498 * 69.99099 * 14 13 12 22 22 N 1.30446 * 107.85588 * 0.22727 * 11 10 9 23 23 O 1.21282 * 110.68520 * 359.59693 * 22 11 10 24 24 H 0.96999 * 119.99950 * 0.02562 * 1 2 3 25 25 H 1.09000 * 108.76481 * 270.05865 * 12 11 10 26 26 H 1.08996 * 109.50126 * 297.52891 * 13 12 11 27 27 H 1.08996 * 109.50238 * 177.41328 * 13 12 11 28 28 H 1.09001 * 109.03985 * 201.67526 * 16 14 13 29 29 H 1.09008 * 109.04035 * 320.60210 * 16 14 13 30 30 H 1.08997 * 109.04807 * 239.40908 * 17 16 14 31 31 H 1.09001 * 109.04082 * 120.59500 * 17 16 14 32 32 H 1.09001 * 110.20381 * 182.85383 * 20 12 11 33 33 H 1.08996 * 109.50622 * 62.30735 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 2.5925 1.9852 -1.3947 5 1 1.3876 2.6810 0.5913 6 1 3.4797 1.4732 0.8033 7 6 2.0074 -1.2164 0.0005 8 1 3.0824 -1.2193 0.1048 9 6 1.3123 -2.4281 -0.1345 10 7 1.8222 -3.6563 -0.0384 11 6 0.7945 -4.4862 -0.2361 12 6 0.8555 -5.9919 -0.2268 13 6 1.9924 -6.4317 0.6889 14 6 1.7609 -5.8530 2.1052 15 1 2.6415 -5.8773 2.7472 16 6 1.1620 -4.4424 1.8748 17 6 -0.3335 -4.5047 1.5858 18 6 -0.8601 -5.9621 1.5994 19 1 -1.9106 -6.0583 1.8737 20 6 -0.5112 -6.5470 0.2095 21 16 0.3098 -6.7773 2.7684 22 7 -0.2703 -3.7619 -0.4440 23 8 -0.0027 -2.5804 -0.3862 24 1 -0.4850 0.8400 -0.0004 25 1 1.0644 -6.3406 -1.2381 26 1 2.9398 -6.0631 0.2956 27 1 2.0179 -7.5202 0.7403 28 1 1.3271 -3.8361 2.7654 29 1 1.6667 -3.9756 1.0288 30 1 -0.5252 -4.0662 0.6064 31 1 -0.8661 -3.9275 2.3416 32 1 -0.4733 -7.6346 0.2715 33 1 -1.2720 -6.2495 -0.5121 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716064305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:55 Heat of formation + Delta-G solvation = 271.079424 kcal Electronic energy + Delta-G solvation = -19576.040481 eV Core-core repulsion = 16739.897031 eV Total energy + Delta-G solvation = -2836.143450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 4.46 seconds Orbital eigenvalues (eV) -45.60577 -39.08919 -34.89422 -34.03010 -31.96822 -31.00530 -30.55580 -27.26956 -24.95561 -23.56474 -22.56517 -21.79059 -19.77337 -18.72264 -18.39110 -17.02450 -16.41752 -15.66822 -15.38520 -14.92861 -13.80413 -13.35069 -13.19042 -12.93848 -12.67134 -12.52869 -12.40968 -11.97805 -11.78071 -11.70076 -11.49492 -11.24130 -10.93131 -10.77452 -10.59064 -10.10044 -9.94651 -9.81871 -9.63599 -9.48839 -9.18165 -7.40819 -7.21988 -7.08974 -6.87483 -4.94820 2.40057 2.59628 2.81893 2.82599 2.88521 3.00836 3.25052 3.54291 4.57228 4.64851 4.96782 5.07536 5.15314 5.35346 5.45326 5.65918 5.75790 5.96627 5.97749 6.05285 6.18322 6.31168 6.36868 6.51878 6.55324 6.58607 6.67452 6.85643 6.86854 7.23017 7.34624 7.65074 7.88307 7.93482 8.10374 8.63669 9.58810 9.85854 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.006741 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.947808 B = 4152.785951 C = 4238.005421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.066 3.934 3 Si 0.939 3.061 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.388 4.388 8 H 0.121 0.879 9 C 0.283 3.717 10 N -0.567 5.567 11 C 0.226 3.774 12 C 0.001 3.999 13 C -0.097 4.097 14 C 0.007 3.993 15 H 0.103 0.897 16 C -0.351 4.351 17 C -0.309 4.309 18 C -0.002 4.002 19 H 0.102 0.898 20 C -0.103 4.103 21 S -0.403 6.403 22 N -0.396 5.396 23 O 0.011 5.989 24 H 0.298 0.702 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.289 0.711 30 H 0.246 0.754 31 H 0.025 0.975 32 H 0.076 0.924 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -2.656 -2.674 4.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.162 4.162 3 Si 0.761 3.239 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.423 4.423 8 H 0.139 0.861 9 C 0.105 3.895 10 N -0.311 5.311 11 C -0.037 4.037 12 C -0.019 4.019 13 C -0.137 4.137 14 C -0.121 4.121 15 H 0.121 0.879 16 C -0.387 4.387 17 C -0.345 4.345 18 C -0.130 4.130 19 H 0.120 0.880 20 C -0.142 4.142 21 S -0.174 6.174 22 N -0.133 5.133 23 O -0.026 6.026 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.287 0.713 30 H 0.248 0.752 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.237 -3.859 -1.940 4.493 hybrid contribution 0.051 1.279 0.693 1.455 sum 1.288 -2.580 -1.247 3.142 Atomic orbital electron populations 1.69605 1.07941 1.31645 1.27571 1.26288 0.95231 1.02671 0.91983 0.85781 0.80081 0.77910 0.80163 1.18419 1.19557 1.17763 1.18814 0.95897 0.85613 1.42000 0.86109 1.23802 0.80287 0.93414 0.92028 1.68901 1.30019 0.99329 1.32841 1.23959 0.86169 0.98422 0.95109 1.19645 0.96047 0.85937 1.00230 1.21910 0.98136 0.99746 0.93921 1.24456 0.95075 0.96588 0.95951 0.87930 1.28796 0.97468 0.96552 1.15892 1.28550 0.94620 0.95040 1.16257 1.24456 0.98099 0.97334 0.93136 0.87985 1.22191 0.96132 0.99837 0.96077 1.87572 1.13315 1.60320 1.56175 1.71087 1.23306 0.92003 1.26871 1.85584 1.27179 1.16419 1.73448 0.89055 0.89080 0.89939 0.91163 0.94981 0.71336 0.75240 0.95567 0.90581 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -16.91 12.12 55.57 0.67 -16.23 16 2 C 0.07 1.41 5.50 -17.28 -0.09 1.32 16 3 Si 0.94 15.65 29.57 -169.99 -5.03 10.62 16 4 H -0.26 -4.24 7.11 56.52 0.40 -3.83 16 5 H -0.27 -4.45 7.11 56.52 0.40 -4.04 16 6 H -0.25 -4.18 7.11 56.52 0.40 -3.78 16 7 C -0.39 -8.89 9.47 -37.95 -0.36 -9.25 16 8 H 0.12 2.55 7.86 -52.49 -0.41 2.14 16 9 C 0.28 6.90 6.99 -16.35 -0.11 6.79 16 10 N -0.57 -13.03 8.19 -59.55 -0.49 -13.51 16 11 C 0.23 4.88 4.01 -156.79 -0.63 4.25 16 12 C 0.00 0.02 2.96 -91.62 -0.27 -0.25 16 13 C -0.10 -1.70 5.06 -26.09 -0.13 -1.83 16 14 C 0.01 0.14 4.87 -24.77 -0.12 0.02 16 15 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 16 C -0.35 -8.17 4.65 -25.97 -0.12 -8.29 16 17 C -0.31 -7.20 4.84 -25.97 -0.13 -7.32 16 18 C 0.00 -0.05 4.84 -24.75 -0.12 -0.17 16 19 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 20 C -0.10 -1.78 5.18 -25.36 -0.13 -1.91 16 21 S -0.40 -8.34 21.97 -107.50 -2.36 -10.70 16 22 N -0.40 -9.18 8.47 -9.82 -0.08 -9.26 16 23 O 0.01 0.27 9.51 15.14 0.14 0.42 16 24 H 0.30 6.00 8.29 -40.82 -0.34 5.66 16 25 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 27 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.29 6.69 1.03 -186.32 -0.19 6.49 16 30 H 0.25 5.74 1.15 -185.96 -0.21 5.53 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 33 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 LS Contribution 260.77 15.07 3.93 3.93 Total: -1.00 -26.09 260.77 -9.17 -35.26 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -3.74 Total: 16.13 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.22 Total: -16.65 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.10 Total: -39.01 kcal Atomic # 8 Polarization: 0.27 SS G_CDS: 0.14 Total: 0.42 kcal Atomic # 14 Polarization: 15.65 SS G_CDS: -5.03 Total: 10.62 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -2.36 Total: -10.70 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.09 -9.17 -35.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716064305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 306.342 kcal (2) G-P(sol) polarization free energy of solvation -26.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 280.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 271.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.46 seconds