Wall clock time and date at job start Mon Mar 30 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30507 * 1 3 3 Si 1.86802 * 120.00079 * 2 1 4 4 H 1.48499 * 109.46816 * 264.98642 * 3 2 1 5 5 H 1.48499 * 109.47197 * 24.98055 * 3 2 1 6 6 H 1.48500 * 109.47559 * 144.98747 * 3 2 1 7 7 C 1.40459 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00634 * 186.39928 * 7 2 1 9 9 C 1.40343 * 119.99771 * 6.40340 * 7 2 1 10 10 N 1.33334 * 126.79569 * 186.13959 * 9 7 2 11 11 C 1.33568 * 105.51416 * 179.97438 * 10 9 7 12 12 C 1.50693 * 126.07073 * 179.97438 * 11 10 9 13 13 C 1.52470 * 108.79136 * 28.40850 * 12 11 10 14 14 C 1.54741 * 109.28293 * 57.47098 * 13 12 11 15 15 H 1.08996 * 114.19683 * 196.09435 * 14 13 12 16 16 C 1.54971 * 105.19880 * 322.91744 * 14 13 12 17 17 C 1.52449 * 111.72503 * 81.07572 * 16 14 13 18 18 C 1.54972 * 111.71898 * 0.02562 * 17 16 14 19 19 H 1.08998 * 114.36924 * 152.21713 * 18 17 16 20 20 C 1.53823 * 109.04912 * 151.85544 * 12 11 10 21 21 S 1.84394 * 105.03498 * 69.99099 * 14 13 12 22 22 N 1.30446 * 107.85588 * 0.22727 * 11 10 9 23 23 O 1.21282 * 110.68520 * 359.59693 * 22 11 10 24 24 H 0.96999 * 119.99950 * 0.02562 * 1 2 3 25 25 H 1.09000 * 108.76481 * 270.05865 * 12 11 10 26 26 H 1.08996 * 109.50126 * 297.52891 * 13 12 11 27 27 H 1.08996 * 109.50238 * 177.41328 * 13 12 11 28 28 H 1.09001 * 109.03985 * 201.67526 * 16 14 13 29 29 H 1.09008 * 109.04035 * 320.60210 * 16 14 13 30 30 H 1.08997 * 109.04807 * 239.40908 * 17 16 14 31 31 H 1.09001 * 109.04082 * 120.59500 * 17 16 14 32 32 H 1.09001 * 110.20381 * 182.85383 * 20 12 11 33 33 H 1.08996 * 109.50622 * 62.30735 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 2.5925 1.9852 -1.3947 5 1 1.3876 2.6810 0.5913 6 1 3.4797 1.4732 0.8033 7 6 2.0074 -1.2164 0.0005 8 1 3.0824 -1.2193 0.1048 9 6 1.3123 -2.4281 -0.1345 10 7 1.8222 -3.6563 -0.0384 11 6 0.7945 -4.4862 -0.2361 12 6 0.8555 -5.9919 -0.2268 13 6 1.9924 -6.4317 0.6889 14 6 1.7609 -5.8530 2.1052 15 1 2.6415 -5.8773 2.7472 16 6 1.1620 -4.4424 1.8748 17 6 -0.3335 -4.5047 1.5858 18 6 -0.8601 -5.9621 1.5994 19 1 -1.9106 -6.0583 1.8737 20 6 -0.5112 -6.5470 0.2095 21 16 0.3098 -6.7773 2.7684 22 7 -0.2703 -3.7619 -0.4440 23 8 -0.0027 -2.5804 -0.3862 24 1 -0.4850 0.8400 -0.0004 25 1 1.0644 -6.3406 -1.2381 26 1 2.9398 -6.0631 0.2956 27 1 2.0179 -7.5202 0.7403 28 1 1.3271 -3.8361 2.7654 29 1 1.6667 -3.9756 1.0288 30 1 -0.5252 -4.0662 0.6064 31 1 -0.8661 -3.9275 2.3416 32 1 -0.4733 -7.6346 0.2715 33 1 -1.2720 -6.2495 -0.5121 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716064305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:53 Heat of formation + Delta-G solvation = 254.191459 kcal Electronic energy + Delta-G solvation = -19576.772798 eV Core-core repulsion = 16739.897031 eV Total energy + Delta-G solvation = -2836.875767 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 4.58 seconds Orbital eigenvalues (eV) -47.34678 -40.73596 -36.62438 -35.72877 -33.62354 -32.65649 -32.19202 -29.03511 -26.60137 -25.12844 -24.31283 -23.48323 -21.38042 -20.44161 -20.13176 -18.72102 -18.04128 -17.33613 -17.01319 -16.60203 -15.33038 -14.93781 -14.85421 -14.49572 -14.29927 -14.18814 -13.90939 -13.58927 -13.48259 -13.22351 -13.08007 -12.77148 -12.57859 -12.22022 -12.00305 -11.73945 -11.58515 -11.36460 -11.33129 -11.17813 -10.89670 -9.09688 -8.91280 -8.87551 -8.59374 -6.76033 0.68518 0.98357 1.23400 1.40458 1.42691 1.61833 1.73520 2.13469 2.85632 3.00274 3.25601 3.54660 3.66403 3.78907 3.93026 4.05809 4.10182 4.41521 4.47587 4.50281 4.63003 4.87527 4.90527 4.92329 4.98687 5.01722 5.08930 5.18406 5.27208 5.33599 5.57269 5.88080 6.11594 6.14775 6.33732 6.80090 7.93972 8.06808 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.006741 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.947808 B = 4152.785951 C = 4238.005421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.027 3.973 3 Si 1.016 2.984 4 H -0.248 1.248 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.404 4.404 8 H 0.135 0.865 9 C 0.258 3.742 10 N -0.576 5.576 11 C 0.242 3.758 12 C -0.007 4.007 13 C -0.089 4.089 14 C 0.004 3.996 15 H 0.109 0.891 16 C -0.357 4.357 17 C -0.321 4.321 18 C -0.005 4.005 19 H 0.107 0.893 20 C -0.093 4.093 21 S -0.413 6.413 22 N -0.415 5.415 23 O -0.019 6.019 24 H 0.309 0.691 25 H 0.131 0.869 26 H 0.093 0.907 27 H 0.101 0.899 28 H -0.013 1.013 29 H 0.292 0.708 30 H 0.252 0.748 31 H -0.021 1.021 32 H 0.106 0.894 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -3.384 -3.933 6.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.197 4.197 3 Si 0.832 3.168 4 H -0.172 1.172 5 H -0.190 1.190 6 H -0.171 1.171 7 C -0.439 4.439 8 H 0.152 0.848 9 C 0.081 3.919 10 N -0.320 5.320 11 C -0.020 4.020 12 C -0.026 4.026 13 C -0.128 4.128 14 C -0.124 4.124 15 H 0.127 0.873 16 C -0.393 4.393 17 C -0.356 4.356 18 C -0.133 4.133 19 H 0.125 0.875 20 C -0.133 4.133 21 S -0.184 6.184 22 N -0.156 5.156 23 O -0.052 6.052 24 H 0.120 0.880 25 H 0.149 0.851 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.006 0.994 29 H 0.289 0.711 30 H 0.253 0.747 31 H -0.002 1.002 32 H 0.125 0.875 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.429 -4.580 -3.204 6.094 hybrid contribution -0.337 1.545 1.139 1.948 sum 2.092 -3.035 -2.065 4.226 Atomic orbital electron populations 1.69663 1.09749 1.33390 1.27420 1.27371 0.95868 1.05887 0.90598 0.84678 0.78613 0.72772 0.80690 1.17215 1.18977 1.17097 1.19403 0.96842 0.86184 1.41430 0.84763 1.24292 0.80438 0.94507 0.92699 1.68842 1.30556 0.99139 1.33479 1.24766 0.85276 1.00095 0.91858 1.20037 0.96787 0.83102 1.02670 1.21914 0.98262 1.01386 0.91249 1.24560 0.94822 0.94671 0.98317 0.87277 1.28971 0.98023 0.98414 1.13869 1.28815 0.94372 0.97146 1.15312 1.24569 0.98259 0.95262 0.95188 0.87475 1.22210 0.95929 1.01330 0.93810 1.87545 1.13846 1.59596 1.57432 1.70973 1.23941 0.91614 1.29063 1.85540 1.27629 1.17460 1.74557 0.87964 0.85096 0.88880 0.88088 0.99417 0.71068 0.74685 1.00173 0.87523 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.05 12.12 21.91 0.27 -35.78 16 2 C 0.03 1.16 5.50 85.43 0.47 1.63 16 3 Si 1.02 31.03 29.57 68.60 2.03 33.06 16 4 H -0.25 -7.14 7.11 99.48 0.71 -6.43 16 5 H -0.27 -7.83 7.11 99.48 0.71 -7.12 16 6 H -0.25 -7.28 7.11 99.48 0.71 -6.57 16 7 C -0.40 -18.74 9.47 23.32 0.22 -18.52 16 8 H 0.13 5.66 7.86 -2.91 -0.02 5.63 16 9 C 0.26 12.87 6.99 85.06 0.59 13.47 16 10 N -0.58 -26.56 8.19 -457.21 -3.74 -30.30 16 11 C 0.24 10.33 4.01 138.61 0.56 10.88 16 12 C -0.01 -0.22 2.96 -11.44 -0.03 -0.25 16 13 C -0.09 -2.80 5.06 31.01 0.16 -2.65 16 14 C 0.00 0.15 4.87 31.86 0.16 0.30 16 15 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 16 C -0.36 -17.09 4.65 31.09 0.14 -16.95 16 17 C -0.32 -15.46 4.84 31.09 0.15 -15.31 16 18 C 0.00 -0.20 4.84 31.88 0.15 -0.04 16 19 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 20 C -0.09 -2.96 5.18 31.48 0.16 -2.79 16 21 S -0.41 -16.62 21.97 -56.49 -1.24 -17.86 16 22 N -0.41 -19.53 8.47 -187.40 -1.59 -21.12 16 23 O -0.02 -0.97 9.51 64.24 0.61 -0.36 16 24 H 0.31 12.56 8.29 -92.71 -0.77 11.79 16 25 H 0.13 3.42 8.14 -2.39 -0.02 3.40 16 26 H 0.09 2.80 8.07 -2.39 -0.02 2.78 16 27 H 0.10 2.66 8.03 -2.39 -0.02 2.64 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.29 13.76 1.03 -222.31 -0.23 13.53 16 30 H 0.25 12.09 1.15 -222.07 -0.26 11.84 16 31 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 32 H 0.11 2.81 8.03 -2.39 -0.02 2.79 16 33 H 0.09 2.65 8.08 -2.39 -0.02 2.63 16 Total: -1.00 -59.22 260.77 -0.27 -59.49 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: 0.67 Total: 43.11 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 2.73 Total: -30.23 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -5.07 Total: -87.20 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: 0.61 Total: -0.36 kcal Atomic # 14 Polarization: 31.03 SS G_CDS: 2.03 Total: 33.06 kcal Atomic # 16 Polarization: -16.62 SS G_CDS: -1.24 Total: -17.86 kcal Total: -59.22 -0.27 -59.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716064305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 313.677 kcal (2) G-P(sol) polarization free energy of solvation -59.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 254.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 254.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.58 seconds