Wall clock time and date at job start Mon Mar 30 2020 06:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81407 * 103.00127 * 2 1 4 4 C 1.52995 * 109.46944 * 179.97438 * 3 2 1 5 5 O 1.45203 * 109.47237 * 180.02562 * 4 3 2 6 6 C 1.34771 * 117.00457 * 180.02562 * 5 4 3 7 7 O 1.21515 * 120.00026 * 359.97438 * 6 5 4 8 8 C 1.47501 * 120.00094 * 179.97438 * 6 5 4 9 9 C 1.40073 * 119.90212 * 180.02562 * 8 6 5 10 10 C 1.36300 * 120.10206 * 180.25905 * 9 8 6 11 11 C 1.40893 * 119.89711 * 359.51403 * 10 9 8 12 12 C 1.41091 * 120.10255 * 180.23496 * 11 10 9 13 13 H 1.08001 * 120.00415 * 204.81651 * 12 11 10 14 14 C 1.40248 * 119.99756 * 24.80634 * 12 11 10 15 15 N 1.30632 * 119.99956 * 17.73115 * 14 12 11 16 16 Si 1.86797 * 120.00167 * 197.73172 * 14 12 11 17 17 H 1.48501 * 109.47351 * 90.00385 * 16 14 12 18 18 H 1.48499 * 109.47050 * 210.00026 * 16 14 12 19 19 H 1.48500 * 109.47161 * 329.99778 * 16 14 12 20 20 C 1.40906 * 119.80286 * 0.50317 * 11 10 9 21 21 C 1.36297 * 119.89800 * 359.73440 * 20 11 10 22 22 H 1.08997 * 109.47557 * 59.99704 * 1 2 3 23 23 H 1.09000 * 109.47539 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47292 * 300.00162 * 1 2 3 25 25 H 1.08996 * 109.46598 * 60.00157 * 3 2 1 26 26 H 1.08989 * 109.47006 * 299.99845 * 3 2 1 27 27 H 1.09003 * 109.47363 * 60.00368 * 4 3 2 28 28 H 1.09003 * 109.47813 * 299.99840 * 4 3 2 29 29 H 1.08002 * 119.94534 * 359.97438 * 9 8 6 30 30 H 1.08004 * 120.05042 * 179.74750 * 10 9 8 31 31 H 0.97000 * 120.00424 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.05172 * 179.70589 * 20 11 10 33 33 H 1.07997 * 119.94971 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9399 0.0006 5 8 4.0690 3.3547 0.0013 6 6 5.3767 3.6808 0.0013 7 8 6.2208 2.8067 0.0014 8 6 5.7833 5.0986 0.0014 9 6 7.1429 5.4352 0.0009 10 6 7.5232 6.7440 0.0063 11 6 6.5463 7.7592 0.0019 12 6 6.9351 9.1155 0.0025 13 1 6.2664 9.8689 0.3920 14 6 8.1901 9.4854 -0.5027 15 7 8.8505 8.6652 -1.2758 16 14 8.9172 11.1507 -0.0701 17 1 9.7279 11.0303 1.1683 18 1 9.7813 11.6179 -1.1838 19 1 7.8207 12.1278 0.1491 20 6 5.1796 7.4160 0.0028 21 6 4.8085 6.1045 0.0023 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8031 2.2371 0.8900 26 1 1.8032 2.2371 -0.8899 27 1 4.1616 1.4703 -0.8891 28 1 4.1609 1.4704 0.8909 29 1 7.8911 4.6563 0.0009 30 1 8.5719 7.0026 0.0100 31 1 9.7183 8.9211 -1.6255 32 1 4.4274 8.1909 0.0043 33 1 3.7613 5.8405 0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773542262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:20 Heat of formation + Delta-G solvation = -83.154426 kcal Electronic energy + Delta-G solvation = -16771.256008 eV Core-core repulsion = 13887.459074 eV Total energy + Delta-G solvation = -2883.796933 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.61275 -37.50846 -35.80253 -33.99224 -31.79244 -30.21446 -29.58349 -29.20780 -26.25067 -23.56636 -22.04868 -21.06379 -19.92225 -17.62285 -17.14917 -16.23441 -16.20166 -16.10134 -15.42081 -14.39751 -14.14272 -14.04619 -13.82648 -13.51337 -13.33451 -12.94231 -12.38815 -12.24726 -12.08419 -11.97453 -11.74225 -11.38860 -11.30137 -11.00960 -10.72098 -10.28547 -10.18663 -10.14273 -9.61576 -9.48872 -9.42241 -7.94931 -7.78174 -7.67553 -7.11909 -4.70640 1.25815 2.02741 2.28621 2.85222 2.91545 2.94338 3.00180 3.50161 3.60768 3.68751 4.44109 4.74135 4.75482 4.84296 4.87028 5.29470 5.40094 5.48256 5.61328 5.62006 5.98108 6.17521 6.22460 6.71858 6.78182 6.93467 7.02353 7.08661 7.38127 7.57755 7.75901 7.84033 7.97904 8.33236 8.53551 8.65777 8.70836 9.79428 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.059709 B = 0.003140 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.827900 B = 8915.091685 C = 9287.755829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.249 6.249 3 C -0.088 4.088 4 C 0.085 3.915 5 O -0.361 6.361 6 C 0.515 3.485 7 O -0.548 6.548 8 C -0.274 4.274 9 C -0.032 4.032 10 C -0.185 4.185 11 C 0.131 3.869 12 C -0.434 4.434 13 H 0.088 0.912 14 C 0.072 3.928 15 N -0.763 5.763 16 Si 0.917 3.083 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.240 4.240 21 C -0.028 4.028 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.289 0.711 32 H 0.100 0.900 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 -6.831 1.504 12.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.025 6.025 3 C -0.236 4.236 4 C 0.009 3.991 5 O -0.279 6.279 6 C 0.367 3.633 7 O -0.441 6.441 8 C -0.277 4.277 9 C -0.051 4.051 10 C -0.204 4.204 11 C 0.128 3.872 12 C -0.461 4.461 13 H 0.106 0.894 14 C -0.151 4.151 15 N -0.385 5.385 16 Si 0.740 3.260 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.259 4.259 21 C -0.046 4.046 22 H 0.097 0.903 23 H 0.121 0.879 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.023 -7.992 1.344 12.128 hybrid contribution -0.471 1.541 0.023 1.612 sum -9.494 -6.451 1.367 11.559 Atomic orbital electron populations 1.23392 0.93618 1.06608 1.05215 1.86863 1.07683 1.09795 1.98153 1.23271 0.99093 0.94703 1.06546 1.22323 0.92237 0.81160 1.03345 1.86554 1.29302 1.26281 1.85784 1.21598 0.78796 0.90784 0.72088 1.90715 1.51896 1.51221 1.50285 1.18208 0.94345 0.86801 1.28353 1.20463 0.93080 0.96353 0.95179 1.20986 0.99986 0.90937 1.08456 1.17852 0.91053 0.93486 0.84828 1.19941 0.99798 0.93693 1.32662 0.89424 1.26175 0.96420 1.00012 0.92457 1.69737 1.12597 1.36631 1.19552 0.86154 0.79649 0.80812 0.79382 1.18788 1.19895 1.18185 1.20717 0.95720 0.94694 1.14782 1.20533 0.96941 0.92798 0.94372 0.90265 0.87868 0.90277 0.88875 0.88859 0.90822 0.90836 0.87983 0.85889 0.89916 0.88199 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.76 101.05 1.09 0.22 16 2 S -0.25 -2.76 22.38 -107.50 -2.41 -5.17 16 3 C -0.09 -1.04 6.32 37.16 0.23 -0.81 16 4 C 0.09 1.31 5.48 37.16 0.20 1.52 16 5 O -0.36 -6.83 9.45 -40.68 -0.38 -7.21 16 6 C 0.52 11.49 7.89 34.51 0.27 11.76 16 7 O -0.55 -13.15 16.11 -19.28 -0.31 -13.46 16 8 C -0.27 -6.45 5.89 -104.75 -0.62 -7.07 16 9 C -0.03 -0.78 9.52 -39.59 -0.38 -1.15 16 10 C -0.18 -4.65 8.63 -39.28 -0.34 -4.99 16 11 C 0.13 3.30 5.57 -106.80 -0.60 2.70 16 12 C -0.43 -10.54 9.04 -37.75 -0.34 -10.88 16 13 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16 14 C 0.07 1.65 5.14 -17.31 -0.09 1.56 16 15 N -0.76 -18.18 10.95 55.56 0.61 -17.57 16 16 Si 0.92 16.90 29.60 -169.99 -5.03 11.87 16 17 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 20 C -0.24 -5.57 9.73 -39.27 -0.38 -5.95 16 21 C -0.03 -0.62 9.55 -39.59 -0.38 -1.00 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 24 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 30 H 0.12 3.14 6.16 -52.48 -0.32 2.81 16 31 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 32 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 33 H 0.10 2.00 7.59 -52.49 -0.40 1.60 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -27.40 305.96 -8.29 -35.69 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.05 Total: 5.33 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.32 Total: -14.08 kcal Atomic # 7 Polarization: -18.18 SS G_CDS: 0.61 Total: -17.57 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.69 Total: -20.67 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.41 Total: -5.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.40 -8.29 -35.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773542262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.466 kcal (2) G-P(sol) polarization free energy of solvation -27.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds