Wall clock time and date at job start Mon Mar 30 2020 06:24:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81393 * 1
3 3 C 1.81407 * 103.00127 * 2 1
4 4 C 1.52995 * 109.46944 * 179.97438 * 3 2 1
5 5 O 1.45203 * 109.47237 * 180.02562 * 4 3 2
6 6 C 1.34771 * 117.00457 * 180.02562 * 5 4 3
7 7 O 1.21515 * 120.00026 * 359.97438 * 6 5 4
8 8 C 1.47501 * 120.00094 * 179.97438 * 6 5 4
9 9 C 1.40073 * 119.90212 * 180.02562 * 8 6 5
10 10 C 1.36300 * 120.10206 * 180.25905 * 9 8 6
11 11 C 1.40893 * 119.89711 * 359.51403 * 10 9 8
12 12 C 1.41091 * 120.10255 * 180.23496 * 11 10 9
13 13 H 1.08001 * 120.00415 * 204.81651 * 12 11 10
14 14 C 1.40248 * 119.99756 * 24.80634 * 12 11 10
15 15 N 1.30632 * 119.99956 * 17.73115 * 14 12 11
16 16 Si 1.86797 * 120.00167 * 197.73172 * 14 12 11
17 17 H 1.48501 * 109.47351 * 90.00385 * 16 14 12
18 18 H 1.48499 * 109.47050 * 210.00026 * 16 14 12
19 19 H 1.48500 * 109.47161 * 329.99778 * 16 14 12
20 20 C 1.40906 * 119.80286 * 0.50317 * 11 10 9
21 21 C 1.36297 * 119.89800 * 359.73440 * 20 11 10
22 22 H 1.08997 * 109.47557 * 59.99704 * 1 2 3
23 23 H 1.09000 * 109.47539 * 180.02562 * 1 2 3
24 24 H 1.09005 * 109.47292 * 300.00162 * 1 2 3
25 25 H 1.08996 * 109.46598 * 60.00157 * 3 2 1
26 26 H 1.08989 * 109.47006 * 299.99845 * 3 2 1
27 27 H 1.09003 * 109.47363 * 60.00368 * 4 3 2
28 28 H 1.09003 * 109.47813 * 299.99840 * 4 3 2
29 29 H 1.08002 * 119.94534 * 359.97438 * 9 8 6
30 30 H 1.08004 * 120.05042 * 179.74750 * 10 9 8
31 31 H 0.97000 * 120.00424 * 179.97438 * 15 14 12
32 32 H 1.07999 * 120.05172 * 179.70589 * 20 11 10
33 33 H 1.07997 * 119.94971 * 180.02562 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.2220 1.7676 0.0000
4 6 3.7423 1.9399 0.0006
5 8 4.0690 3.3547 0.0013
6 6 5.3767 3.6808 0.0013
7 8 6.2208 2.8067 0.0014
8 6 5.7833 5.0986 0.0014
9 6 7.1429 5.4352 0.0009
10 6 7.5232 6.7440 0.0063
11 6 6.5463 7.7592 0.0019
12 6 6.9351 9.1155 0.0025
13 1 6.2664 9.8689 0.3920
14 6 8.1901 9.4854 -0.5027
15 7 8.8505 8.6652 -1.2758
16 14 8.9172 11.1507 -0.0701
17 1 9.7279 11.0303 1.1683
18 1 9.7813 11.6179 -1.1838
19 1 7.8207 12.1278 0.1491
20 6 5.1796 7.4160 0.0028
21 6 4.8085 6.1045 0.0023
22 1 -0.3634 0.5138 -0.8899
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3634 0.5139 0.8900
25 1 1.8031 2.2371 0.8900
26 1 1.8032 2.2371 -0.8899
27 1 4.1616 1.4703 -0.8891
28 1 4.1609 1.4704 0.8909
29 1 7.8911 4.6563 0.0009
30 1 8.5719 7.0026 0.0100
31 1 9.7183 8.9211 -1.6255
32 1 4.4274 8.1909 0.0043
33 1 3.7613 5.8405 0.0026
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000773542262.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:24:20
Heat of formation + Delta-G solvation = -83.154426 kcal
Electronic energy + Delta-G solvation = -16771.256008 eV
Core-core repulsion = 13887.459074 eV
Total energy + Delta-G solvation = -2883.796933 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.076 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-39.61275 -37.50846 -35.80253 -33.99224 -31.79244 -30.21446 -29.58349 -29.20780
-26.25067 -23.56636 -22.04868 -21.06379 -19.92225 -17.62285 -17.14917 -16.23441
-16.20166 -16.10134 -15.42081 -14.39751 -14.14272 -14.04619 -13.82648 -13.51337
-13.33451 -12.94231 -12.38815 -12.24726 -12.08419 -11.97453 -11.74225 -11.38860
-11.30137 -11.00960 -10.72098 -10.28547 -10.18663 -10.14273 -9.61576 -9.48872
-9.42241 -7.94931 -7.78174 -7.67553 -7.11909 -4.70640 1.25815 2.02741
2.28621 2.85222 2.91545 2.94338 3.00180 3.50161 3.60768 3.68751
4.44109 4.74135 4.75482 4.84296 4.87028 5.29470 5.40094 5.48256
5.61328 5.62006 5.98108 6.17521 6.22460 6.71858 6.78182 6.93467
7.02353 7.08661 7.38127 7.57755 7.75901 7.84033 7.97904 8.33236
8.53551 8.65777 8.70836 9.79428
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.059709 B = 0.003140 C = 0.003014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 468.827900 B = 8915.091685 C = 9287.755829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 S -0.249 6.249
3 C -0.088 4.088
4 C 0.085 3.915
5 O -0.361 6.361
6 C 0.515 3.485
7 O -0.548 6.548
8 C -0.274 4.274
9 C -0.032 4.032
10 C -0.185 4.185
11 C 0.131 3.869
12 C -0.434 4.434
13 H 0.088 0.912
14 C 0.072 3.928
15 N -0.763 5.763
16 Si 0.917 3.083
17 H -0.263 1.263
18 H -0.274 1.274
19 H -0.258 1.258
20 C -0.240 4.240
21 C -0.028 4.028
22 H 0.078 0.922
23 H 0.103 0.897
24 H 0.078 0.922
25 H 0.093 0.907
26 H 0.093 0.907
27 H 0.073 0.927
28 H 0.073 0.927
29 H 0.102 0.898
30 H 0.123 0.877
31 H 0.289 0.711
32 H 0.100 0.900
33 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.122 -6.831 1.504 12.304
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.288 4.288
2 S -0.025 6.025
3 C -0.236 4.236
4 C 0.009 3.991
5 O -0.279 6.279
6 C 0.367 3.633
7 O -0.441 6.441
8 C -0.277 4.277
9 C -0.051 4.051
10 C -0.204 4.204
11 C 0.128 3.872
12 C -0.461 4.461
13 H 0.106 0.894
14 C -0.151 4.151
15 N -0.385 5.385
16 Si 0.740 3.260
17 H -0.188 1.188
18 H -0.199 1.199
19 H -0.182 1.182
20 C -0.259 4.259
21 C -0.046 4.046
22 H 0.097 0.903
23 H 0.121 0.879
24 H 0.097 0.903
25 H 0.111 0.889
26 H 0.111 0.889
27 H 0.092 0.908
28 H 0.092 0.908
29 H 0.120 0.880
30 H 0.141 0.859
31 H 0.101 0.899
32 H 0.118 0.882
33 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -9.023 -7.992 1.344 12.128
hybrid contribution -0.471 1.541 0.023 1.612
sum -9.494 -6.451 1.367 11.559
Atomic orbital electron populations
1.23392 0.93618 1.06608 1.05215 1.86863 1.07683 1.09795 1.98153
1.23271 0.99093 0.94703 1.06546 1.22323 0.92237 0.81160 1.03345
1.86554 1.29302 1.26281 1.85784 1.21598 0.78796 0.90784 0.72088
1.90715 1.51896 1.51221 1.50285 1.18208 0.94345 0.86801 1.28353
1.20463 0.93080 0.96353 0.95179 1.20986 0.99986 0.90937 1.08456
1.17852 0.91053 0.93486 0.84828 1.19941 0.99798 0.93693 1.32662
0.89424 1.26175 0.96420 1.00012 0.92457 1.69737 1.12597 1.36631
1.19552 0.86154 0.79649 0.80812 0.79382 1.18788 1.19895 1.18185
1.20717 0.95720 0.94694 1.14782 1.20533 0.96941 0.92798 0.94372
0.90265 0.87868 0.90277 0.88875 0.88859 0.90822 0.90836 0.87983
0.85889 0.89916 0.88199 0.88012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.86 10.76 101.05 1.09 0.22 16
2 S -0.25 -2.76 22.38 -107.50 -2.41 -5.17 16
3 C -0.09 -1.04 6.32 37.16 0.23 -0.81 16
4 C 0.09 1.31 5.48 37.16 0.20 1.52 16
5 O -0.36 -6.83 9.45 -40.68 -0.38 -7.21 16
6 C 0.52 11.49 7.89 34.51 0.27 11.76 16
7 O -0.55 -13.15 16.11 -19.28 -0.31 -13.46 16
8 C -0.27 -6.45 5.89 -104.75 -0.62 -7.07 16
9 C -0.03 -0.78 9.52 -39.59 -0.38 -1.15 16
10 C -0.18 -4.65 8.63 -39.28 -0.34 -4.99 16
11 C 0.13 3.30 5.57 -106.80 -0.60 2.70 16
12 C -0.43 -10.54 9.04 -37.75 -0.34 -10.88 16
13 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16
14 C 0.07 1.65 5.14 -17.31 -0.09 1.56 16
15 N -0.76 -18.18 10.95 55.56 0.61 -17.57 16
16 Si 0.92 16.90 29.60 -169.99 -5.03 11.87 16
17 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16
18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16
19 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16
20 C -0.24 -5.57 9.73 -39.27 -0.38 -5.95 16
21 C -0.03 -0.62 9.55 -39.59 -0.38 -1.00 16
22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
23 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16
24 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16
25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
29 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16
30 H 0.12 3.14 6.16 -52.48 -0.32 2.81 16
31 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16
32 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16
33 H 0.10 2.00 7.59 -52.49 -0.40 1.60 16
LS Contribution 305.96 15.07 4.61 4.61
Total: -1.00 -27.40 305.96 -8.29 -35.69
By element:
Atomic # 1 Polarization: 9.38 SS G_CDS: -4.05 Total: 5.33 kcal
Atomic # 6 Polarization: -12.76 SS G_CDS: -1.32 Total: -14.08 kcal
Atomic # 7 Polarization: -18.18 SS G_CDS: 0.61 Total: -17.57 kcal
Atomic # 8 Polarization: -19.98 SS G_CDS: -0.69 Total: -20.67 kcal
Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal
Atomic # 16 Polarization: -2.76 SS G_CDS: -2.41 Total: -5.17 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -27.40 -8.29 -35.69 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000773542262.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.466 kcal
(2) G-P(sol) polarization free energy of solvation -27.403 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds