Wall clock time and date at job start Mon Mar 30 2020 06:24:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81393 * 1
3 3 C 1.81407 * 103.00127 * 2 1
4 4 C 1.52995 * 109.46944 * 179.97438 * 3 2 1
5 5 O 1.45203 * 109.47237 * 180.02562 * 4 3 2
6 6 C 1.34771 * 117.00457 * 180.02562 * 5 4 3
7 7 O 1.21515 * 120.00026 * 359.97438 * 6 5 4
8 8 C 1.47501 * 120.00094 * 179.97438 * 6 5 4
9 9 C 1.40073 * 119.90212 * 180.02562 * 8 6 5
10 10 C 1.36300 * 120.10206 * 180.25905 * 9 8 6
11 11 C 1.40893 * 119.89711 * 359.51403 * 10 9 8
12 12 C 1.41091 * 120.10255 * 180.23496 * 11 10 9
13 13 H 1.08001 * 120.00415 * 204.81651 * 12 11 10
14 14 C 1.40248 * 119.99756 * 24.80634 * 12 11 10
15 15 N 1.30632 * 119.99956 * 17.73115 * 14 12 11
16 16 Si 1.86797 * 120.00167 * 197.73172 * 14 12 11
17 17 H 1.48501 * 109.47351 * 90.00385 * 16 14 12
18 18 H 1.48499 * 109.47050 * 210.00026 * 16 14 12
19 19 H 1.48500 * 109.47161 * 329.99778 * 16 14 12
20 20 C 1.40906 * 119.80286 * 0.50317 * 11 10 9
21 21 C 1.36297 * 119.89800 * 359.73440 * 20 11 10
22 22 H 1.08997 * 109.47557 * 59.99704 * 1 2 3
23 23 H 1.09000 * 109.47539 * 180.02562 * 1 2 3
24 24 H 1.09005 * 109.47292 * 300.00162 * 1 2 3
25 25 H 1.08996 * 109.46598 * 60.00157 * 3 2 1
26 26 H 1.08989 * 109.47006 * 299.99845 * 3 2 1
27 27 H 1.09003 * 109.47363 * 60.00368 * 4 3 2
28 28 H 1.09003 * 109.47813 * 299.99840 * 4 3 2
29 29 H 1.08002 * 119.94534 * 359.97438 * 9 8 6
30 30 H 1.08004 * 120.05042 * 179.74750 * 10 9 8
31 31 H 0.97000 * 120.00424 * 179.97438 * 15 14 12
32 32 H 1.07999 * 120.05172 * 179.70589 * 20 11 10
33 33 H 1.07997 * 119.94971 * 180.02562 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.2220 1.7676 0.0000
4 6 3.7423 1.9399 0.0006
5 8 4.0690 3.3547 0.0013
6 6 5.3767 3.6808 0.0013
7 8 6.2208 2.8067 0.0014
8 6 5.7833 5.0986 0.0014
9 6 7.1429 5.4352 0.0009
10 6 7.5232 6.7440 0.0063
11 6 6.5463 7.7592 0.0019
12 6 6.9351 9.1155 0.0025
13 1 6.2664 9.8689 0.3920
14 6 8.1901 9.4854 -0.5027
15 7 8.8505 8.6652 -1.2758
16 14 8.9172 11.1507 -0.0701
17 1 9.7279 11.0303 1.1683
18 1 9.7813 11.6179 -1.1838
19 1 7.8207 12.1278 0.1491
20 6 5.1796 7.4160 0.0028
21 6 4.8085 6.1045 0.0023
22 1 -0.3634 0.5138 -0.8899
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3634 0.5139 0.8900
25 1 1.8031 2.2371 0.8900
26 1 1.8032 2.2371 -0.8899
27 1 4.1616 1.4703 -0.8891
28 1 4.1609 1.4704 0.8909
29 1 7.8911 4.6563 0.0009
30 1 8.5719 7.0026 0.0100
31 1 9.7183 8.9211 -1.6255
32 1 4.4274 8.1909 0.0043
33 1 3.7613 5.8405 0.0026
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000773542262.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:24:19
Heat of formation + Delta-G solvation = -95.670463 kcal
Electronic energy + Delta-G solvation = -16771.798744 eV
Core-core repulsion = 13887.459074 eV
Total energy + Delta-G solvation = -2884.339669 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.076 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.29495 -39.29636 -37.46319 -35.77737 -33.03728 -31.99477 -31.39816 -29.79762
-28.03009 -24.97097 -23.63937 -22.86693 -21.65594 -19.42891 -18.80041 -17.80521
-17.60231 -17.22346 -16.99895 -15.79459 -15.59964 -15.44931 -15.11225 -14.66431
-14.49646 -14.30828 -14.04871 -13.78111 -13.43787 -13.21962 -13.13394 -12.95596
-12.86315 -12.65092 -12.40832 -11.82072 -11.65019 -11.41186 -11.29909 -11.17526
-11.05987 -9.64692 -9.54012 -8.85913 -8.79897 -6.56265 0.22036 0.37666
1.13551 1.36146 1.41353 1.53888 1.54731 1.86965 2.03191 2.14286
2.67087 3.61535 3.61669 3.71715 4.11423 4.26311 4.34256 4.34979
4.36565 4.42946 4.48424 4.65243 4.89319 4.92764 4.97464 5.14347
5.19648 5.37460 5.54166 5.76220 5.92260 5.97226 6.13855 6.48495
6.69168 6.81365 6.97314 8.08793
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.059709 B = 0.003140 C = 0.003014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 468.827900 B = 8915.091685 C = 9287.755829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 S -0.291 6.291
3 C -0.075 4.075
4 C 0.081 3.919
5 O -0.354 6.354
6 C 0.520 3.480
7 O -0.572 6.572
8 C -0.292 4.292
9 C -0.041 4.041
10 C -0.203 4.203
11 C 0.105 3.895
12 C -0.456 4.456
13 H 0.098 0.902
14 C 0.033 3.967
15 N -0.794 5.794
16 Si 0.993 3.007
17 H -0.261 1.261
18 H -0.266 1.266
19 H -0.250 1.250
20 C -0.249 4.249
21 C -0.020 4.020
22 H 0.090 0.910
23 H 0.118 0.882
24 H 0.090 0.910
25 H 0.104 0.896
26 H 0.103 0.897
27 H 0.067 0.933
28 H 0.069 0.931
29 H 0.099 0.901
30 H 0.111 0.889
31 H 0.299 0.701
32 H 0.119 0.881
33 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.825 -6.062 1.694 13.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.274 4.274
2 S -0.067 6.067
3 C -0.223 4.223
4 C 0.006 3.994
5 O -0.272 6.272
6 C 0.372 3.628
7 O -0.467 6.467
8 C -0.295 4.295
9 C -0.060 4.060
10 C -0.222 4.222
11 C 0.101 3.899
12 C -0.482 4.482
13 H 0.116 0.884
14 C -0.187 4.187
15 N -0.416 5.416
16 Si 0.812 3.188
17 H -0.185 1.185
18 H -0.191 1.191
19 H -0.173 1.173
20 C -0.268 4.268
21 C -0.039 4.039
22 H 0.109 0.891
23 H 0.137 0.863
24 H 0.109 0.891
25 H 0.123 0.877
26 H 0.122 0.878
27 H 0.086 0.914
28 H 0.087 0.913
29 H 0.117 0.883
30 H 0.129 0.871
31 H 0.110 0.890
32 H 0.137 0.863
33 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -10.759 -7.241 1.530 13.058
hybrid contribution -0.018 1.196 -0.062 1.198
sum -10.777 -6.045 1.469 12.443
Atomic orbital electron populations
1.23496 0.89558 1.08001 1.06393 1.87047 1.12121 1.09254 1.98290
1.23140 0.96077 0.95465 1.07635 1.22586 0.94976 0.78906 1.02902
1.86507 1.27051 1.28624 1.85033 1.21379 0.79698 0.90117 0.71560
1.90697 1.52888 1.51775 1.51377 1.18415 0.94276 0.88117 1.28643
1.20530 0.93925 0.96063 0.95471 1.20948 0.99666 0.91528 1.10065
1.18212 0.92020 0.94087 0.85564 1.20291 1.01151 0.93678 1.33112
0.88441 1.27105 0.96157 1.03875 0.91598 1.69777 1.13240 1.38646
1.19976 0.85026 0.78861 0.75818 0.79115 1.18511 1.19061 1.17324
1.20961 0.95408 0.95702 1.14734 1.20773 0.98085 0.92089 0.92907
0.89114 0.86318 0.89070 0.87716 0.87816 0.91415 0.91280 0.88320
0.87096 0.88960 0.86276 0.85112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.22 10.76 113.37 1.22 0.00 16
2 S -0.29 -5.99 22.38 -56.49 -1.26 -7.25 16
3 C -0.08 -1.64 6.32 71.98 0.45 -1.19 16
4 C 0.08 2.45 5.48 71.98 0.39 2.84 16
5 O -0.35 -13.06 9.45 -56.82 -0.54 -13.60 16
6 C 0.52 23.19 7.89 70.26 0.55 23.74 16
7 O -0.57 -27.84 16.11 19.79 0.32 -27.52 16
8 C -0.29 -13.80 5.89 -19.95 -0.12 -13.92 16
9 C -0.04 -2.06 9.52 22.26 0.21 -1.85 16
10 C -0.20 -10.55 8.63 22.47 0.19 -10.35 16
11 C 0.10 5.32 5.57 -21.28 -0.12 5.20 16
12 C -0.46 -22.11 9.04 23.46 0.21 -21.90 16
13 H 0.10 4.38 7.91 -2.91 -0.02 4.36 16
14 C 0.03 1.49 5.14 85.36 0.44 1.93 16
15 N -0.79 -38.18 10.95 21.88 0.24 -37.94 16
16 Si 0.99 33.75 29.60 68.60 2.03 35.78 16
17 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16
18 H -0.27 -8.65 7.11 99.48 0.71 -7.94 16
19 H -0.25 -8.12 7.11 99.48 0.71 -7.42 16
20 C -0.25 -11.41 9.73 22.47 0.22 -11.19 16
21 C -0.02 -0.88 9.55 22.26 0.21 -0.66 16
22 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
23 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16
24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16
25 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16
26 H 0.10 2.05 8.14 -2.40 -0.02 2.03 16
27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
29 H 0.10 4.88 7.63 -2.91 -0.02 4.86 16
30 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16
31 H 0.30 12.81 8.29 -92.71 -0.77 12.04 16
32 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16
33 H 0.13 4.84 7.59 -2.91 -0.02 4.82 16
Total: -1.00 -59.20 305.96 5.77 -53.43
By element:
Atomic # 1 Polarization: 23.35 SS G_CDS: 1.11 Total: 24.45 kcal
Atomic # 6 Polarization: -31.23 SS G_CDS: 3.88 Total: -27.36 kcal
Atomic # 7 Polarization: -38.18 SS G_CDS: 0.24 Total: -37.94 kcal
Atomic # 8 Polarization: -40.90 SS G_CDS: -0.22 Total: -41.12 kcal
Atomic # 14 Polarization: 33.75 SS G_CDS: 2.03 Total: 35.78 kcal
Atomic # 16 Polarization: -5.99 SS G_CDS: -1.26 Total: -7.25 kcal
Total: -59.20 5.77 -53.43 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000773542262.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.237 kcal
(2) G-P(sol) polarization free energy of solvation -59.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.433 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.670 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds