Wall clock time and date at job start Mon Mar 30 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81407 * 103.00127 * 2 1 4 4 C 1.52995 * 109.46944 * 179.97438 * 3 2 1 5 5 O 1.45203 * 109.47237 * 180.02562 * 4 3 2 6 6 C 1.34771 * 117.00457 * 180.02562 * 5 4 3 7 7 O 1.21515 * 120.00026 * 359.97438 * 6 5 4 8 8 C 1.47501 * 120.00094 * 179.97438 * 6 5 4 9 9 C 1.40073 * 119.90212 * 180.02562 * 8 6 5 10 10 C 1.36300 * 120.10206 * 180.25905 * 9 8 6 11 11 C 1.40893 * 119.89711 * 359.51403 * 10 9 8 12 12 C 1.41091 * 120.10255 * 180.23496 * 11 10 9 13 13 H 1.08001 * 120.00415 * 204.81651 * 12 11 10 14 14 C 1.40248 * 119.99756 * 24.80634 * 12 11 10 15 15 N 1.30632 * 119.99956 * 17.73115 * 14 12 11 16 16 Si 1.86797 * 120.00167 * 197.73172 * 14 12 11 17 17 H 1.48501 * 109.47351 * 90.00385 * 16 14 12 18 18 H 1.48499 * 109.47050 * 210.00026 * 16 14 12 19 19 H 1.48500 * 109.47161 * 329.99778 * 16 14 12 20 20 C 1.40906 * 119.80286 * 0.50317 * 11 10 9 21 21 C 1.36297 * 119.89800 * 359.73440 * 20 11 10 22 22 H 1.08997 * 109.47557 * 59.99704 * 1 2 3 23 23 H 1.09000 * 109.47539 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47292 * 300.00162 * 1 2 3 25 25 H 1.08996 * 109.46598 * 60.00157 * 3 2 1 26 26 H 1.08989 * 109.47006 * 299.99845 * 3 2 1 27 27 H 1.09003 * 109.47363 * 60.00368 * 4 3 2 28 28 H 1.09003 * 109.47813 * 299.99840 * 4 3 2 29 29 H 1.08002 * 119.94534 * 359.97438 * 9 8 6 30 30 H 1.08004 * 120.05042 * 179.74750 * 10 9 8 31 31 H 0.97000 * 120.00424 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.05172 * 179.70589 * 20 11 10 33 33 H 1.07997 * 119.94971 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9399 0.0006 5 8 4.0690 3.3547 0.0013 6 6 5.3767 3.6808 0.0013 7 8 6.2208 2.8067 0.0014 8 6 5.7833 5.0986 0.0014 9 6 7.1429 5.4352 0.0009 10 6 7.5232 6.7440 0.0063 11 6 6.5463 7.7592 0.0019 12 6 6.9351 9.1155 0.0025 13 1 6.2664 9.8689 0.3920 14 6 8.1901 9.4854 -0.5027 15 7 8.8505 8.6652 -1.2758 16 14 8.9172 11.1507 -0.0701 17 1 9.7279 11.0303 1.1683 18 1 9.7813 11.6179 -1.1838 19 1 7.8207 12.1278 0.1491 20 6 5.1796 7.4160 0.0028 21 6 4.8085 6.1045 0.0023 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8031 2.2371 0.8900 26 1 1.8032 2.2371 -0.8899 27 1 4.1616 1.4703 -0.8891 28 1 4.1609 1.4704 0.8909 29 1 7.8911 4.6563 0.0009 30 1 8.5719 7.0026 0.0100 31 1 9.7183 8.9211 -1.6255 32 1 4.4274 8.1909 0.0043 33 1 3.7613 5.8405 0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773542262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:19 Heat of formation + Delta-G solvation = -95.670463 kcal Electronic energy + Delta-G solvation = -16771.798744 eV Core-core repulsion = 13887.459074 eV Total energy + Delta-G solvation = -2884.339669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29495 -39.29636 -37.46319 -35.77737 -33.03728 -31.99477 -31.39816 -29.79762 -28.03009 -24.97097 -23.63937 -22.86693 -21.65594 -19.42891 -18.80041 -17.80521 -17.60231 -17.22346 -16.99895 -15.79459 -15.59964 -15.44931 -15.11225 -14.66431 -14.49646 -14.30828 -14.04871 -13.78111 -13.43787 -13.21962 -13.13394 -12.95596 -12.86315 -12.65092 -12.40832 -11.82072 -11.65019 -11.41186 -11.29909 -11.17526 -11.05987 -9.64692 -9.54012 -8.85913 -8.79897 -6.56265 0.22036 0.37666 1.13551 1.36146 1.41353 1.53888 1.54731 1.86965 2.03191 2.14286 2.67087 3.61535 3.61669 3.71715 4.11423 4.26311 4.34256 4.34979 4.36565 4.42946 4.48424 4.65243 4.89319 4.92764 4.97464 5.14347 5.19648 5.37460 5.54166 5.76220 5.92260 5.97226 6.13855 6.48495 6.69168 6.81365 6.97314 8.08793 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.059709 B = 0.003140 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.827900 B = 8915.091685 C = 9287.755829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.291 6.291 3 C -0.075 4.075 4 C 0.081 3.919 5 O -0.354 6.354 6 C 0.520 3.480 7 O -0.572 6.572 8 C -0.292 4.292 9 C -0.041 4.041 10 C -0.203 4.203 11 C 0.105 3.895 12 C -0.456 4.456 13 H 0.098 0.902 14 C 0.033 3.967 15 N -0.794 5.794 16 Si 0.993 3.007 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.250 1.250 20 C -0.249 4.249 21 C -0.020 4.020 22 H 0.090 0.910 23 H 0.118 0.882 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.299 0.701 32 H 0.119 0.881 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 -6.062 1.694 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.067 6.067 3 C -0.223 4.223 4 C 0.006 3.994 5 O -0.272 6.272 6 C 0.372 3.628 7 O -0.467 6.467 8 C -0.295 4.295 9 C -0.060 4.060 10 C -0.222 4.222 11 C 0.101 3.899 12 C -0.482 4.482 13 H 0.116 0.884 14 C -0.187 4.187 15 N -0.416 5.416 16 Si 0.812 3.188 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.173 1.173 20 C -0.268 4.268 21 C -0.039 4.039 22 H 0.109 0.891 23 H 0.137 0.863 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.759 -7.241 1.530 13.058 hybrid contribution -0.018 1.196 -0.062 1.198 sum -10.777 -6.045 1.469 12.443 Atomic orbital electron populations 1.23496 0.89558 1.08001 1.06393 1.87047 1.12121 1.09254 1.98290 1.23140 0.96077 0.95465 1.07635 1.22586 0.94976 0.78906 1.02902 1.86507 1.27051 1.28624 1.85033 1.21379 0.79698 0.90117 0.71560 1.90697 1.52888 1.51775 1.51377 1.18415 0.94276 0.88117 1.28643 1.20530 0.93925 0.96063 0.95471 1.20948 0.99666 0.91528 1.10065 1.18212 0.92020 0.94087 0.85564 1.20291 1.01151 0.93678 1.33112 0.88441 1.27105 0.96157 1.03875 0.91598 1.69777 1.13240 1.38646 1.19976 0.85026 0.78861 0.75818 0.79115 1.18511 1.19061 1.17324 1.20961 0.95408 0.95702 1.14734 1.20773 0.98085 0.92089 0.92907 0.89114 0.86318 0.89070 0.87716 0.87816 0.91415 0.91280 0.88320 0.87096 0.88960 0.86276 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.76 113.37 1.22 0.00 16 2 S -0.29 -5.99 22.38 -56.49 -1.26 -7.25 16 3 C -0.08 -1.64 6.32 71.98 0.45 -1.19 16 4 C 0.08 2.45 5.48 71.98 0.39 2.84 16 5 O -0.35 -13.06 9.45 -56.82 -0.54 -13.60 16 6 C 0.52 23.19 7.89 70.26 0.55 23.74 16 7 O -0.57 -27.84 16.11 19.79 0.32 -27.52 16 8 C -0.29 -13.80 5.89 -19.95 -0.12 -13.92 16 9 C -0.04 -2.06 9.52 22.26 0.21 -1.85 16 10 C -0.20 -10.55 8.63 22.47 0.19 -10.35 16 11 C 0.10 5.32 5.57 -21.28 -0.12 5.20 16 12 C -0.46 -22.11 9.04 23.46 0.21 -21.90 16 13 H 0.10 4.38 7.91 -2.91 -0.02 4.36 16 14 C 0.03 1.49 5.14 85.36 0.44 1.93 16 15 N -0.79 -38.18 10.95 21.88 0.24 -37.94 16 16 Si 0.99 33.75 29.60 68.60 2.03 35.78 16 17 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 18 H -0.27 -8.65 7.11 99.48 0.71 -7.94 16 19 H -0.25 -8.12 7.11 99.48 0.71 -7.42 16 20 C -0.25 -11.41 9.73 22.47 0.22 -11.19 16 21 C -0.02 -0.88 9.55 22.26 0.21 -0.66 16 22 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.10 2.05 8.14 -2.40 -0.02 2.03 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.10 4.88 7.63 -2.91 -0.02 4.86 16 30 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 31 H 0.30 12.81 8.29 -92.71 -0.77 12.04 16 32 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.13 4.84 7.59 -2.91 -0.02 4.82 16 Total: -1.00 -59.20 305.96 5.77 -53.43 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 1.11 Total: 24.45 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.88 Total: -27.36 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.24 Total: -37.94 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.22 Total: -41.12 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 2.03 Total: 35.78 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.26 Total: -7.25 kcal Total: -59.20 5.77 -53.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773542262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.237 kcal (2) G-P(sol) polarization free energy of solvation -59.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds