Wall clock time and date at job start Mon Mar 30 2020 07:42:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53005 * 109.47143 * 2 1
4 4 H 1.08997 * 109.47066 * 305.00122 * 3 2 1
5 5 C 1.50704 * 109.47251 * 184.99944 * 3 2 1
6 6 H 1.08004 * 119.99754 * 240.00337 * 5 3 2
7 7 C 1.37873 * 119.99806 * 59.99954 * 5 3 2
8 8 N 1.31515 * 120.00087 * 0.02562 * 7 5 3
9 9 Si 1.86807 * 119.99889 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.46852 * 90.00308 * 9 7 5
11 11 H 1.48497 * 109.47112 * 210.00288 * 9 7 5
12 12 H 1.48499 * 109.46992 * 330.00496 * 9 7 5
13 13 O 1.45200 * 109.46687 * 65.00100 * 3 2 1
14 14 C 1.34807 * 117.00223 * 269.99894 * 13 3 2
15 15 O 1.21519 * 119.99746 * 0.02562 * 14 13 3
16 16 C 1.47272 * 120.00389 * 180.02562 * 14 13 3
17 17 C 1.36647 * 125.66513 * 180.02562 * 16 14 13
18 18 C 1.39945 * 107.02243 * 179.73370 * 17 16 14
19 19 C 1.37975 * 106.73673 * 0.25998 * 18 17 16
20 20 C 1.46450 * 125.93395 * 179.97438 * 19 18 17
21 21 C 1.50700 * 120.00349 * 180.02562 * 20 19 18
22 22 O 1.21337 * 119.99658 * 0.02562 * 20 19 18
23 23 O 1.34478 * 125.66279 * 0.19169 * 16 14 13
24 24 H 1.09004 * 109.47125 * 299.99516 * 1 2 3
25 25 H 1.08997 * 109.47038 * 59.99699 * 1 2 3
26 26 H 1.09003 * 109.46957 * 179.97438 * 1 2 3
27 27 H 1.09001 * 109.47567 * 240.00228 * 2 1 3
28 28 H 1.09000 * 109.47607 * 119.99840 * 2 1 3
29 29 H 0.97005 * 119.99638 * 179.97438 * 8 7 5
30 30 H 1.08002 * 126.49260 * 0.02562 * 17 16 14
31 31 H 1.08002 * 126.63282 * 180.26736 * 18 17 16
32 32 H 1.08997 * 109.47147 * 59.99770 * 21 20 19
33 33 H 1.09001 * 109.47297 * 179.97438 * 21 20 19
34 34 H 1.09002 * 109.47154 * 300.00278 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 -0.8418
5 6 3.5419 1.4444 -0.1238
6 1 4.1472 1.8889 0.6524
7 6 4.1432 0.8785 -1.2279
8 7 3.4061 0.3375 -2.1733
9 14 6.0050 0.8814 -1.3818
10 1 6.5549 -0.3501 -0.7602
11 1 6.3829 0.9225 -2.8172
12 1 6.5569 2.0739 -0.6901
13 8 1.6558 2.0916 1.2407
14 6 0.4676 2.7281 1.2561
15 8 -0.2284 2.7398 0.2600
16 6 0.0128 3.4093 2.4801
17 6 -1.1654 4.0862 2.6243
18 6 -1.2020 4.5700 3.9369
19 6 -0.0288 4.1679 4.5414
20 6 0.3667 4.4499 5.9230
21 6 1.6856 3.9435 6.4476
22 8 -0.3676 5.0912 6.6453
23 8 0.6896 3.4712 3.6405
24 1 -0.3633 0.5138 0.8901
25 1 -0.3633 0.5139 -0.8899
26 1 -0.3633 -1.0277 -0.0005
27 1 1.8934 -0.5138 -0.8900
28 1 1.8934 -0.5138 0.8900
29 1 3.8293 -0.0603 -2.9503
30 1 -1.9268 4.2183 1.8697
31 1 -1.9953 5.1467 4.3893
32 1 2.4976 4.3594 5.8512
33 1 1.8050 4.2497 7.4869
34 1 1.7084 2.8556 6.3840
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000774260605.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:42:03
Heat of formation + Delta-G solvation = -113.812737 kcal
Electronic energy + Delta-G solvation = -19881.968741 eV
Core-core repulsion = 16554.089493 eV
Total energy + Delta-G solvation = -3327.879248 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 266.103 amu
Computer time = 3.03 seconds
Orbital eigenvalues (eV)
-42.80875 -39.68211 -39.28271 -36.08471 -33.66009 -33.24606 -31.58928 -31.29392
-29.51272 -27.41574 -24.87615 -23.21750 -22.17044 -21.10759 -20.16283 -19.77433
-18.15636 -16.96029 -16.82516 -16.63017 -15.81460 -15.37255 -15.18383 -14.69829
-14.60702 -13.62706 -13.57345 -13.18951 -13.18302 -12.87003 -12.50262 -12.43370
-12.29592 -11.63666 -11.47952 -11.29868 -11.04749 -10.73926 -10.47317 -10.35382
-10.25328 -10.13919 -9.84542 -9.52683 -8.95518 -8.89865 -8.53591 -6.26012
-4.33607 0.30003 1.60755 2.30194 2.55258 3.20110 3.21121 3.24344
3.28170 3.37175 3.83495 4.26683 4.63378 4.74983 5.05884 5.14850
5.19365 5.21791 5.30244 5.47085 5.64823 5.82111 6.03547 6.13728
6.20272 6.33413 6.55583 6.70927 6.83552 7.04075 7.05201 7.10331
7.49411 7.61865 7.76970 8.03768 8.36576 8.75343 9.31711 10.80804
Molecular weight = 266.10amu
Principal moments of inertia in cm(-1)
A = 0.023616 B = 0.004882 C = 0.004286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.332945 B = 5734.000833 C = 6532.034788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.137 4.137
3 C 0.221 3.779
4 H 0.051 0.949
5 C -0.524 4.524
6 H 0.070 0.930
7 C 0.065 3.935
8 N -0.887 5.887
9 Si 0.913 3.087
10 H -0.277 1.277
11 H -0.283 1.283
12 H -0.271 1.271
13 O -0.339 6.339
14 C 0.534 3.466
15 O -0.482 6.482
16 C 0.006 3.994
17 C -0.147 4.147
18 C -0.131 4.131
19 C -0.090 4.090
20 C 0.442 3.558
21 C -0.197 4.197
22 O -0.442 6.442
23 O -0.124 6.124
24 H 0.030 0.970
25 H 0.054 0.946
26 H 0.036 0.964
27 H 0.112 0.888
28 H 0.044 0.956
29 H 0.268 0.732
30 H 0.171 0.829
31 H 0.168 0.832
32 H 0.101 0.899
33 H 0.090 0.910
34 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.392 4.997 11.628 13.757
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.175 4.175
3 C 0.169 3.831
4 H 0.069 0.931
5 C -0.562 4.562
6 H 0.089 0.911
7 C -0.138 4.138
8 N -0.525 5.525
9 Si 0.740 3.260
10 H -0.203 1.203
11 H -0.209 1.209
12 H -0.196 1.196
13 O -0.255 6.255
14 C 0.376 3.624
15 O -0.373 6.373
16 C -0.048 4.048
17 C -0.166 4.166
18 C -0.150 4.150
19 C -0.143 4.143
20 C 0.320 3.680
21 C -0.254 4.254
22 O -0.317 6.317
23 O -0.018 6.018
24 H 0.049 0.951
25 H 0.074 0.926
26 H 0.055 0.945
27 H 0.130 0.870
28 H 0.063 0.937
29 H 0.077 0.923
30 H 0.189 0.811
31 H 0.185 0.815
32 H 0.120 0.880
33 H 0.108 0.892
34 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -5.608 5.067 11.557 13.809
hybrid contribution 0.703 -0.098 -0.438 0.834
sum -4.905 4.969 11.119 13.129
Atomic orbital electron populations
1.21884 0.98327 0.99371 1.00672 1.22056 0.92679 0.99076 1.03710
1.20882 0.95437 0.88897 0.77902 0.93090 1.21013 0.89315 1.39357
1.06468 0.91144 1.24875 0.99382 0.94602 0.94934 1.69881 1.35500
1.37616 1.09456 0.86252 0.83631 0.78750 0.77409 1.20280 1.20908
1.19580 1.86655 1.32387 1.61691 1.44724 1.19303 0.81917 0.76945
0.84253 1.90892 1.55781 1.58370 1.32216 1.21875 0.93483 1.03994
0.85399 1.21952 0.97560 0.99290 0.97826 1.22405 0.97802 1.01155
0.93640 1.23347 0.94230 1.03316 0.93374 1.21249 0.88132 0.76174
0.82422 1.22259 0.95344 1.04317 1.03484 1.90629 1.53501 1.31533
1.56039 1.84195 1.42325 1.56488 1.18814 0.95113 0.92648 0.94476
0.86999 0.93701 0.92251 0.81127 0.81461 0.88012 0.89151 0.88043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.06 8.56 37.15 0.32 -2.74 16
2 C -0.14 -3.29 5.49 -26.73 -0.15 -3.44 16
3 C 0.22 5.67 2.25 -27.88 -0.06 5.61 16
4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16
5 C -0.52 -14.21 8.90 -34.44 -0.31 -14.51 16
6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16
7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16
8 N -0.89 -24.24 11.29 55.43 0.63 -23.61 16
9 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16
10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16
12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16
13 O -0.34 -7.90 9.82 -42.27 -0.41 -8.32 16
14 C 0.53 10.99 6.41 34.40 0.22 11.21 16
15 O -0.48 -10.58 14.04 -19.28 -0.27 -10.85 16
16 C 0.01 0.10 7.18 -36.49 -0.26 -0.16 16
17 C -0.15 -2.01 10.58 -39.52 -0.42 -2.43 16
18 C -0.13 -1.59 10.66 -39.04 -0.42 -2.01 16
19 C -0.09 -1.18 7.09 -36.37 -0.26 -1.44 16
20 C 0.44 5.05 7.23 -31.00 -0.22 4.82 16
21 C -0.20 -1.65 10.13 36.01 0.36 -1.28 16
22 O -0.44 -5.90 17.60 5.51 0.10 -5.80 16
23 O -0.12 -1.93 10.55 3.99 0.04 -1.89 16
24 H 0.03 0.62 6.06 -51.93 -0.31 0.31 16
25 H 0.05 1.21 7.79 -51.93 -0.40 0.80 16
26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
27 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16
28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16
29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16
30 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16
31 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16
32 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16
33 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16
34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
LS Contribution 303.82 15.07 4.58 4.58
Total: -1.00 -29.44 303.82 -5.55 -34.99
By element:
Atomic # 1 Polarization: 4.12 SS G_CDS: -3.90 Total: 0.22 kcal
Atomic # 6 Polarization: -3.47 SS G_CDS: -1.28 Total: -4.75 kcal
Atomic # 7 Polarization: -24.24 SS G_CDS: 0.63 Total: -23.61 kcal
Atomic # 8 Polarization: -26.31 SS G_CDS: -0.55 Total: -26.86 kcal
Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -29.44 -5.55 -34.99 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000774260605.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.824 kcal
(2) G-P(sol) polarization free energy of solvation -29.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.813 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.03 seconds