Wall clock time and date at job start Mon Mar 30 2020 07:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 H 1.08997 * 109.47066 * 305.00122 * 3 2 1 5 5 C 1.50704 * 109.47251 * 184.99944 * 3 2 1 6 6 H 1.08004 * 119.99754 * 240.00337 * 5 3 2 7 7 C 1.37873 * 119.99806 * 59.99954 * 5 3 2 8 8 N 1.31515 * 120.00087 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99889 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46852 * 90.00308 * 9 7 5 11 11 H 1.48497 * 109.47112 * 210.00288 * 9 7 5 12 12 H 1.48499 * 109.46992 * 330.00496 * 9 7 5 13 13 O 1.45200 * 109.46687 * 65.00100 * 3 2 1 14 14 C 1.34807 * 117.00223 * 269.99894 * 13 3 2 15 15 O 1.21519 * 119.99746 * 0.02562 * 14 13 3 16 16 C 1.47272 * 120.00389 * 180.02562 * 14 13 3 17 17 C 1.36647 * 125.66513 * 180.02562 * 16 14 13 18 18 C 1.39945 * 107.02243 * 179.73370 * 17 16 14 19 19 C 1.37975 * 106.73673 * 0.25998 * 18 17 16 20 20 C 1.46450 * 125.93395 * 179.97438 * 19 18 17 21 21 C 1.50700 * 120.00349 * 180.02562 * 20 19 18 22 22 O 1.21337 * 119.99658 * 0.02562 * 20 19 18 23 23 O 1.34478 * 125.66279 * 0.19169 * 16 14 13 24 24 H 1.09004 * 109.47125 * 299.99516 * 1 2 3 25 25 H 1.08997 * 109.47038 * 59.99699 * 1 2 3 26 26 H 1.09003 * 109.46957 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47567 * 240.00228 * 2 1 3 28 28 H 1.09000 * 109.47607 * 119.99840 * 2 1 3 29 29 H 0.97005 * 119.99638 * 179.97438 * 8 7 5 30 30 H 1.08002 * 126.49260 * 0.02562 * 17 16 14 31 31 H 1.08002 * 126.63282 * 180.26736 * 18 17 16 32 32 H 1.08997 * 109.47147 * 59.99770 * 21 20 19 33 33 H 1.09001 * 109.47297 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.47154 * 300.00278 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4061 0.3375 -2.1733 9 14 6.0050 0.8814 -1.3818 10 1 6.5549 -0.3501 -0.7602 11 1 6.3829 0.9225 -2.8172 12 1 6.5569 2.0739 -0.6901 13 8 1.6558 2.0916 1.2407 14 6 0.4676 2.7281 1.2561 15 8 -0.2284 2.7398 0.2600 16 6 0.0128 3.4093 2.4801 17 6 -1.1654 4.0862 2.6243 18 6 -1.2020 4.5700 3.9369 19 6 -0.0288 4.1679 4.5414 20 6 0.3667 4.4499 5.9230 21 6 1.6856 3.9435 6.4476 22 8 -0.3676 5.0912 6.6453 23 8 0.6896 3.4712 3.6405 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0603 -2.9503 30 1 -1.9268 4.2183 1.8697 31 1 -1.9953 5.1467 4.3893 32 1 2.4976 4.3594 5.8512 33 1 1.8050 4.2497 7.4869 34 1 1.7084 2.8556 6.3840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774260605.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:03 Heat of formation + Delta-G solvation = -113.812737 kcal Electronic energy + Delta-G solvation = -19881.968741 eV Core-core repulsion = 16554.089493 eV Total energy + Delta-G solvation = -3327.879248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -42.80875 -39.68211 -39.28271 -36.08471 -33.66009 -33.24606 -31.58928 -31.29392 -29.51272 -27.41574 -24.87615 -23.21750 -22.17044 -21.10759 -20.16283 -19.77433 -18.15636 -16.96029 -16.82516 -16.63017 -15.81460 -15.37255 -15.18383 -14.69829 -14.60702 -13.62706 -13.57345 -13.18951 -13.18302 -12.87003 -12.50262 -12.43370 -12.29592 -11.63666 -11.47952 -11.29868 -11.04749 -10.73926 -10.47317 -10.35382 -10.25328 -10.13919 -9.84542 -9.52683 -8.95518 -8.89865 -8.53591 -6.26012 -4.33607 0.30003 1.60755 2.30194 2.55258 3.20110 3.21121 3.24344 3.28170 3.37175 3.83495 4.26683 4.63378 4.74983 5.05884 5.14850 5.19365 5.21791 5.30244 5.47085 5.64823 5.82111 6.03547 6.13728 6.20272 6.33413 6.55583 6.70927 6.83552 7.04075 7.05201 7.10331 7.49411 7.61865 7.76970 8.03768 8.36576 8.75343 9.31711 10.80804 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.004882 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.332945 B = 5734.000833 C = 6532.034788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.221 3.779 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.913 3.087 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.339 6.339 14 C 0.534 3.466 15 O -0.482 6.482 16 C 0.006 3.994 17 C -0.147 4.147 18 C -0.131 4.131 19 C -0.090 4.090 20 C 0.442 3.558 21 C -0.197 4.197 22 O -0.442 6.442 23 O -0.124 6.124 24 H 0.030 0.970 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.112 0.888 28 H 0.044 0.956 29 H 0.268 0.732 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 4.997 11.628 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.562 4.562 6 H 0.089 0.911 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.740 3.260 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.255 6.255 14 C 0.376 3.624 15 O -0.373 6.373 16 C -0.048 4.048 17 C -0.166 4.166 18 C -0.150 4.150 19 C -0.143 4.143 20 C 0.320 3.680 21 C -0.254 4.254 22 O -0.317 6.317 23 O -0.018 6.018 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.130 0.870 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.189 0.811 31 H 0.185 0.815 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.608 5.067 11.557 13.809 hybrid contribution 0.703 -0.098 -0.438 0.834 sum -4.905 4.969 11.119 13.129 Atomic orbital electron populations 1.21884 0.98327 0.99371 1.00672 1.22056 0.92679 0.99076 1.03710 1.20882 0.95437 0.88897 0.77902 0.93090 1.21013 0.89315 1.39357 1.06468 0.91144 1.24875 0.99382 0.94602 0.94934 1.69881 1.35500 1.37616 1.09456 0.86252 0.83631 0.78750 0.77409 1.20280 1.20908 1.19580 1.86655 1.32387 1.61691 1.44724 1.19303 0.81917 0.76945 0.84253 1.90892 1.55781 1.58370 1.32216 1.21875 0.93483 1.03994 0.85399 1.21952 0.97560 0.99290 0.97826 1.22405 0.97802 1.01155 0.93640 1.23347 0.94230 1.03316 0.93374 1.21249 0.88132 0.76174 0.82422 1.22259 0.95344 1.04317 1.03484 1.90629 1.53501 1.31533 1.56039 1.84195 1.42325 1.56488 1.18814 0.95113 0.92648 0.94476 0.86999 0.93701 0.92251 0.81127 0.81461 0.88012 0.89151 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.56 37.15 0.32 -2.74 16 2 C -0.14 -3.29 5.49 -26.73 -0.15 -3.44 16 3 C 0.22 5.67 2.25 -27.88 -0.06 5.61 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 5 C -0.52 -14.21 8.90 -34.44 -0.31 -14.51 16 6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.24 11.29 55.43 0.63 -23.61 16 9 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 O -0.34 -7.90 9.82 -42.27 -0.41 -8.32 16 14 C 0.53 10.99 6.41 34.40 0.22 11.21 16 15 O -0.48 -10.58 14.04 -19.28 -0.27 -10.85 16 16 C 0.01 0.10 7.18 -36.49 -0.26 -0.16 16 17 C -0.15 -2.01 10.58 -39.52 -0.42 -2.43 16 18 C -0.13 -1.59 10.66 -39.04 -0.42 -2.01 16 19 C -0.09 -1.18 7.09 -36.37 -0.26 -1.44 16 20 C 0.44 5.05 7.23 -31.00 -0.22 4.82 16 21 C -0.20 -1.65 10.13 36.01 0.36 -1.28 16 22 O -0.44 -5.90 17.60 5.51 0.10 -5.80 16 23 O -0.12 -1.93 10.55 3.99 0.04 -1.89 16 24 H 0.03 0.62 6.06 -51.93 -0.31 0.31 16 25 H 0.05 1.21 7.79 -51.93 -0.40 0.80 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -29.44 303.82 -5.55 -34.99 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.90 Total: 0.22 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.28 Total: -4.75 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.63 Total: -23.61 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.55 Total: -26.86 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.44 -5.55 -34.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774260605.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.824 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds