Wall clock time and date at job start Mon Mar 30 2020 07:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 H 1.08997 * 109.47066 * 305.00122 * 3 2 1 5 5 C 1.50704 * 109.47251 * 184.99944 * 3 2 1 6 6 H 1.08004 * 119.99754 * 240.00337 * 5 3 2 7 7 C 1.37873 * 119.99806 * 59.99954 * 5 3 2 8 8 N 1.31515 * 120.00087 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99889 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46852 * 90.00308 * 9 7 5 11 11 H 1.48497 * 109.47112 * 210.00288 * 9 7 5 12 12 H 1.48499 * 109.46992 * 330.00496 * 9 7 5 13 13 O 1.45200 * 109.46687 * 65.00100 * 3 2 1 14 14 C 1.34807 * 117.00223 * 269.99894 * 13 3 2 15 15 O 1.21519 * 119.99746 * 0.02562 * 14 13 3 16 16 C 1.47272 * 120.00389 * 180.02562 * 14 13 3 17 17 C 1.36647 * 125.66513 * 180.02562 * 16 14 13 18 18 C 1.39945 * 107.02243 * 179.73370 * 17 16 14 19 19 C 1.37975 * 106.73673 * 0.25998 * 18 17 16 20 20 C 1.46450 * 125.93395 * 179.97438 * 19 18 17 21 21 C 1.50700 * 120.00349 * 180.02562 * 20 19 18 22 22 O 1.21337 * 119.99658 * 0.02562 * 20 19 18 23 23 O 1.34478 * 125.66279 * 0.19169 * 16 14 13 24 24 H 1.09004 * 109.47125 * 299.99516 * 1 2 3 25 25 H 1.08997 * 109.47038 * 59.99699 * 1 2 3 26 26 H 1.09003 * 109.46957 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47567 * 240.00228 * 2 1 3 28 28 H 1.09000 * 109.47607 * 119.99840 * 2 1 3 29 29 H 0.97005 * 119.99638 * 179.97438 * 8 7 5 30 30 H 1.08002 * 126.49260 * 0.02562 * 17 16 14 31 31 H 1.08002 * 126.63282 * 180.26736 * 18 17 16 32 32 H 1.08997 * 109.47147 * 59.99770 * 21 20 19 33 33 H 1.09001 * 109.47297 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.47154 * 300.00278 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4061 0.3375 -2.1733 9 14 6.0050 0.8814 -1.3818 10 1 6.5549 -0.3501 -0.7602 11 1 6.3829 0.9225 -2.8172 12 1 6.5569 2.0739 -0.6901 13 8 1.6558 2.0916 1.2407 14 6 0.4676 2.7281 1.2561 15 8 -0.2284 2.7398 0.2600 16 6 0.0128 3.4093 2.4801 17 6 -1.1654 4.0862 2.6243 18 6 -1.2020 4.5700 3.9369 19 6 -0.0288 4.1679 4.5414 20 6 0.3667 4.4499 5.9230 21 6 1.6856 3.9435 6.4476 22 8 -0.3676 5.0912 6.6453 23 8 0.6896 3.4712 3.6405 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0603 -2.9503 30 1 -1.9268 4.2183 1.8697 31 1 -1.9953 5.1467 4.3893 32 1 2.4976 4.3594 5.8512 33 1 1.8050 4.2497 7.4869 34 1 1.7084 2.8556 6.3840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774260605.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:59 Heat of formation + Delta-G solvation = -130.320826 kcal Electronic energy + Delta-G solvation = -19882.684585 eV Core-core repulsion = 16554.089493 eV Total energy + Delta-G solvation = -3328.595093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -43.95492 -41.33752 -40.30480 -37.85153 -35.57950 -34.39016 -33.41880 -32.37125 -30.53960 -29.31251 -26.27382 -24.99810 -23.35173 -22.52080 -21.66394 -21.11863 -19.66280 -18.65511 -18.21075 -17.96261 -17.47703 -16.91642 -16.49051 -16.06864 -15.71900 -15.07475 -14.90372 -14.58939 -14.51255 -14.25007 -14.04941 -13.47573 -13.34265 -13.19200 -13.16486 -13.14887 -12.85679 -12.57505 -12.17681 -11.94796 -11.73801 -11.46197 -11.33310 -11.29001 -10.89363 -10.55230 -10.07286 -8.28631 -6.45479 -0.84199 0.45722 1.06707 1.43542 1.44651 1.55776 1.56485 1.72909 1.90879 2.39694 2.84662 3.01552 3.57832 3.69080 3.96827 4.21913 4.25401 4.35628 4.37276 4.49715 4.50505 4.59038 4.68545 4.78320 5.00806 5.06196 5.12249 5.17032 5.26659 5.44084 5.48435 5.62999 5.84317 6.03825 6.16401 6.53109 6.76649 7.24846 8.78144 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.004882 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.332945 B = 5734.000833 C = 6532.034788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.131 4.131 3 C 0.224 3.776 4 H 0.017 0.983 5 C -0.552 4.552 6 H 0.065 0.935 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.267 1.267 13 O -0.352 6.352 14 C 0.533 3.467 15 O -0.505 6.505 16 C -0.035 4.035 17 C -0.118 4.118 18 C -0.128 4.128 19 C -0.083 4.083 20 C 0.448 3.552 21 C -0.194 4.194 22 O -0.458 6.458 23 O -0.136 6.136 24 H 0.034 0.966 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.272 0.728 30 H 0.189 0.811 31 H 0.198 0.802 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 5.422 13.225 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.034 0.966 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.191 1.191 13 O -0.268 6.268 14 C 0.377 3.623 15 O -0.396 6.396 16 C -0.088 4.088 17 C -0.137 4.137 18 C -0.147 4.147 19 C -0.136 4.136 20 C 0.327 3.673 21 C -0.251 4.251 22 O -0.334 6.334 23 O -0.031 6.031 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.206 0.794 31 H 0.215 0.785 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.585 5.496 13.163 15.319 hybrid contribution 0.606 -0.142 -0.830 1.037 sum -4.979 5.353 12.334 14.338 Atomic orbital electron populations 1.21747 0.96145 1.00968 1.00173 1.21904 0.94608 0.97768 1.02650 1.20594 0.94900 0.89495 0.77872 0.96559 1.21289 0.90251 1.40352 1.07076 0.91655 1.25744 1.04120 0.93743 0.94242 1.69993 1.37426 1.37694 1.09812 0.85224 0.77756 0.79087 0.77613 1.19215 1.20237 1.19150 1.86623 1.34257 1.62510 1.43404 1.19748 0.80692 0.76296 0.85546 1.90863 1.55974 1.59253 1.33540 1.21332 0.95187 1.07149 0.85100 1.22263 0.96151 0.96589 0.98718 1.22768 0.98227 1.00946 0.92727 1.23965 0.94154 1.01704 0.93754 1.21636 0.88880 0.75464 0.81341 1.22317 0.93483 1.04786 1.04479 1.90634 1.54324 1.32402 1.56074 1.84155 1.42871 1.57319 1.18769 0.94716 0.93977 0.91722 0.89078 0.93498 0.91894 0.79387 0.78513 0.87241 0.87411 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.56 71.98 0.62 -5.03 16 2 C -0.13 -6.45 5.49 30.59 0.17 -6.28 16 3 C 0.22 11.95 2.25 29.85 0.07 12.02 16 4 H 0.02 0.98 7.16 -2.39 -0.02 0.96 16 5 C -0.55 -30.77 8.90 25.60 0.23 -30.54 16 6 H 0.07 3.60 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -50.75 11.29 21.45 0.24 -50.51 16 9 Si 0.98 41.94 29.54 68.60 2.03 43.96 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 O -0.35 -16.97 9.82 -55.77 -0.55 -17.51 16 14 C 0.53 22.49 6.41 70.20 0.45 22.94 16 15 O -0.50 -22.80 14.04 19.77 0.28 -22.52 16 16 C -0.04 -1.17 7.18 24.27 0.17 -1.00 16 17 C -0.12 -3.03 10.58 22.31 0.24 -2.79 16 18 C -0.13 -2.77 10.66 22.62 0.24 -2.53 16 19 C -0.08 -2.02 7.09 24.35 0.17 -1.84 16 20 C 0.45 9.18 7.23 27.83 0.20 9.38 16 21 C -0.19 -2.75 10.13 71.24 0.72 -2.03 16 22 O -0.46 -11.10 17.60 -3.21 -0.06 -11.16 16 23 O -0.14 -4.13 10.55 -7.37 -0.08 -4.21 16 24 H 0.03 1.41 6.06 -2.38 -0.01 1.40 16 25 H 0.04 1.87 7.79 -2.39 -0.02 1.85 16 26 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 4.86 5.95 -2.39 -0.01 4.85 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 30 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.63 303.82 6.71 -57.92 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.12 Total: 10.12 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 3.72 Total: -6.09 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.24 Total: -50.51 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.40 Total: -55.40 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -64.63 6.71 -57.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774260605.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.403 kcal (2) G-P(sol) polarization free energy of solvation -64.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds