Wall clock time and date at job start Mon Mar 30 2020 07:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47071 * 2 1 4 4 H 1.09000 * 109.46497 * 55.00254 * 3 2 1 5 5 C 1.50703 * 109.46854 * 175.00067 * 3 2 1 6 6 H 1.07997 * 119.99416 * 120.00683 * 5 3 2 7 7 C 1.37874 * 120.00257 * 300.00040 * 5 3 2 8 8 N 1.31507 * 120.00361 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99911 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47191 * 89.99882 * 9 7 5 11 11 H 1.48503 * 109.47014 * 209.99921 * 9 7 5 12 12 H 1.48505 * 109.46906 * 329.99358 * 9 7 5 13 13 O 1.45196 * 109.47283 * 295.00327 * 3 2 1 14 14 C 1.34802 * 117.00060 * 89.99852 * 13 3 2 15 15 O 1.21515 * 119.99941 * 359.97438 * 14 13 3 16 16 C 1.47273 * 120.00333 * 179.97438 * 14 13 3 17 17 C 1.36648 * 125.66782 * 180.32924 * 16 14 13 18 18 C 1.39943 * 107.02513 * 180.12416 * 17 16 14 19 19 C 1.37977 * 106.73118 * 359.58002 * 18 17 16 20 20 C 1.46453 * 125.92867 * 180.22519 * 19 18 17 21 21 C 1.50699 * 120.00131 * 180.02562 * 20 19 18 22 22 O 1.21338 * 120.00236 * 0.02562 * 20 19 18 23 23 O 1.34477 * 125.66134 * 359.97438 * 16 14 13 24 24 H 1.08998 * 109.47296 * 299.99297 * 1 2 3 25 25 H 1.08994 * 109.47571 * 59.99656 * 1 2 3 26 26 H 1.08998 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46955 * 240.00376 * 2 1 3 28 28 H 1.08994 * 109.47571 * 120.00344 * 2 1 3 29 29 H 0.97002 * 120.00507 * 179.97438 * 8 7 5 30 30 H 1.07999 * 126.48890 * 359.96952 * 17 16 14 31 31 H 1.08002 * 126.63700 * 179.84779 * 18 17 16 32 32 H 1.09002 * 109.47408 * 89.99995 * 21 20 19 33 33 H 1.09001 * 109.46971 * 210.00190 * 21 20 19 34 34 H 1.08998 * 109.47213 * 329.99663 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1088 2.5700 10 1 2.8755 -1.3273 2.2633 11 1 3.7937 0.2347 3.8751 12 1 1.7877 0.8074 2.6387 13 8 1.6558 2.0918 -1.2406 14 6 0.4676 2.7282 -1.2559 15 8 -0.2283 2.7398 -0.2598 16 6 0.0128 3.4096 -2.4797 17 6 -1.1624 4.0923 -2.6218 18 6 -1.1988 4.5768 -3.9341 19 6 -0.0268 4.1722 -4.5396 20 6 0.3702 4.4574 -5.9201 21 6 1.6868 3.9468 -6.4463 22 8 -0.3609 5.1047 -6.6403 23 8 0.6882 3.4689 -3.6411 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 5.8770 0.4825 2.1131 30 1 -1.9208 4.2296 -1.8653 31 1 -1.9892 5.1589 -4.3846 32 1 1.5446 2.9587 -6.8841 33 1 2.0637 4.6304 -7.2070 34 1 2.4044 3.8820 -5.6285 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774260608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:08 Heat of formation + Delta-G solvation = -103.672357 kcal Electronic energy + Delta-G solvation = -19960.693060 eV Core-core repulsion = 16633.253532 eV Total energy + Delta-G solvation = -3327.439529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 5.02 seconds Orbital eigenvalues (eV) -42.88690 -39.90491 -39.34451 -36.34266 -33.77413 -33.32819 -32.03958 -31.44316 -29.58494 -27.93301 -24.99606 -22.95624 -22.29694 -21.37238 -20.34196 -20.00419 -18.38459 -17.13543 -16.88179 -16.64195 -16.22929 -15.66667 -15.22533 -14.88391 -14.60508 -13.66290 -13.65140 -13.55893 -13.24048 -12.99639 -12.61048 -12.50906 -12.43585 -12.08563 -11.94166 -11.63047 -11.35058 -10.84399 -10.58044 -10.33628 -10.32240 -10.11254 -9.78300 -9.65848 -9.20331 -8.99242 -8.73799 -6.30175 -4.33801 0.22485 1.51791 2.20704 2.50554 3.04371 3.12770 3.15415 3.25808 3.26810 3.77624 4.19069 4.56263 4.71544 4.97035 4.99981 5.16539 5.19543 5.24714 5.34806 5.56205 5.70404 5.76466 5.81319 5.86747 5.96382 6.26872 6.45503 6.47717 6.55014 6.60284 6.85696 7.06202 7.15776 7.36036 7.98744 8.37393 8.76291 9.25410 10.81596 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.004895 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.309756 B = 5718.947021 C = 6308.643372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.197 3.803 4 H 0.051 0.949 5 C -0.529 4.529 6 H 0.089 0.911 7 C 0.082 3.918 8 N -0.885 5.885 9 Si 0.876 3.124 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.260 1.260 13 O -0.324 6.324 14 C 0.535 3.465 15 O -0.484 6.484 16 C 0.002 3.998 17 C -0.143 4.143 18 C -0.132 4.132 19 C -0.085 4.085 20 C 0.443 3.557 21 C -0.198 4.198 22 O -0.441 6.441 23 O -0.123 6.123 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.271 0.729 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 3.988 -10.426 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C 0.144 3.856 4 H 0.068 0.932 5 C -0.566 4.566 6 H 0.107 0.893 7 C -0.121 4.121 8 N -0.521 5.521 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.184 1.184 13 O -0.239 6.239 14 C 0.378 3.622 15 O -0.374 6.374 16 C -0.051 4.051 17 C -0.162 4.162 18 C -0.151 4.151 19 C -0.138 4.138 20 C 0.320 3.680 21 C -0.255 4.255 22 O -0.316 6.316 23 O -0.017 6.017 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.906 4.108 -10.428 15.638 hybrid contribution -0.563 -0.541 1.038 1.299 sum -11.469 3.567 -9.389 15.246 Atomic orbital electron populations 1.21918 0.96936 1.00363 1.01700 1.22394 0.94397 0.99351 1.02579 1.21154 0.96740 0.88209 0.79518 0.93177 1.20749 0.87385 1.40354 1.08123 0.89309 1.24712 0.94961 0.95160 0.97303 1.69821 1.08497 1.43991 1.29803 0.87016 0.81010 0.80202 0.81347 1.19797 1.21530 1.18445 1.86673 1.32552 1.61664 1.43013 1.19346 0.81618 0.76795 0.84446 1.90889 1.55809 1.58454 1.32274 1.21699 0.93663 1.04431 0.85324 1.21951 0.97457 0.98959 0.97845 1.22415 0.97839 1.01264 0.93621 1.23395 0.94136 1.02769 0.93459 1.21288 0.88076 0.76256 0.82336 1.22249 0.95182 1.04006 1.04068 1.90631 1.53647 1.31366 1.55968 1.84198 1.42484 1.56208 1.18810 0.92381 0.93743 0.93609 0.90955 0.91457 0.91918 0.81086 0.81372 0.87703 0.88747 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.56 37.15 0.32 -2.53 16 2 C -0.15 -3.25 5.15 -26.73 -0.14 -3.39 16 3 C 0.20 4.76 1.84 -27.88 -0.05 4.71 16 4 H 0.05 1.26 6.22 -51.93 -0.32 0.94 16 5 C -0.53 -14.67 9.48 -34.44 -0.33 -15.00 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 7 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 8 N -0.88 -25.94 13.96 55.43 0.77 -25.16 16 9 Si 0.88 20.82 24.41 -169.99 -4.15 16.67 16 10 H -0.27 -6.18 6.83 56.52 0.39 -5.80 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 13 O -0.32 -7.21 9.82 -42.26 -0.41 -7.63 16 14 C 0.54 10.37 6.41 34.40 0.22 10.59 16 15 O -0.48 -9.85 14.04 -19.28 -0.27 -10.12 16 16 C 0.00 0.04 7.18 -36.49 -0.26 -0.23 16 17 C -0.14 -1.84 10.58 -39.52 -0.42 -2.25 16 18 C -0.13 -1.53 10.66 -39.04 -0.42 -1.94 16 19 C -0.09 -1.07 7.07 -36.37 -0.26 -1.33 16 20 C 0.44 4.91 7.23 -31.00 -0.22 4.68 16 21 C -0.20 -1.63 10.17 36.01 0.37 -1.26 16 22 O -0.44 -5.74 17.62 5.51 0.10 -5.64 16 23 O -0.12 -1.84 10.42 4.01 0.04 -1.80 16 24 H 0.06 1.11 7.79 -51.93 -0.40 0.71 16 25 H 0.04 0.81 6.06 -51.93 -0.31 0.49 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.07 1.51 3.21 -51.93 -0.17 1.34 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.82 7.96 -51.93 -0.41 0.41 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -30.66 296.81 -4.50 -35.16 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.77 Total: -0.20 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.29 Total: -5.75 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.77 Total: -25.16 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.55 Total: -25.19 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.15 Total: 16.67 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.66 -4.50 -35.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774260608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.512 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.02 seconds