Wall clock time and date at job start Mon Mar 30 2020 07:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47071 * 2 1 4 4 H 1.09000 * 109.46497 * 55.00254 * 3 2 1 5 5 C 1.50703 * 109.46854 * 175.00067 * 3 2 1 6 6 H 1.07997 * 119.99416 * 120.00683 * 5 3 2 7 7 C 1.37874 * 120.00257 * 300.00040 * 5 3 2 8 8 N 1.31507 * 120.00361 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99911 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47191 * 89.99882 * 9 7 5 11 11 H 1.48503 * 109.47014 * 209.99921 * 9 7 5 12 12 H 1.48505 * 109.46906 * 329.99358 * 9 7 5 13 13 O 1.45196 * 109.47283 * 295.00327 * 3 2 1 14 14 C 1.34802 * 117.00060 * 89.99852 * 13 3 2 15 15 O 1.21515 * 119.99941 * 359.97438 * 14 13 3 16 16 C 1.47273 * 120.00333 * 179.97438 * 14 13 3 17 17 C 1.36648 * 125.66782 * 180.32924 * 16 14 13 18 18 C 1.39943 * 107.02513 * 180.12416 * 17 16 14 19 19 C 1.37977 * 106.73118 * 359.58002 * 18 17 16 20 20 C 1.46453 * 125.92867 * 180.22519 * 19 18 17 21 21 C 1.50699 * 120.00131 * 180.02562 * 20 19 18 22 22 O 1.21338 * 120.00236 * 0.02562 * 20 19 18 23 23 O 1.34477 * 125.66134 * 359.97438 * 16 14 13 24 24 H 1.08998 * 109.47296 * 299.99297 * 1 2 3 25 25 H 1.08994 * 109.47571 * 59.99656 * 1 2 3 26 26 H 1.08998 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46955 * 240.00376 * 2 1 3 28 28 H 1.08994 * 109.47571 * 120.00344 * 2 1 3 29 29 H 0.97002 * 120.00507 * 179.97438 * 8 7 5 30 30 H 1.07999 * 126.48890 * 359.96952 * 17 16 14 31 31 H 1.08002 * 126.63700 * 179.84779 * 18 17 16 32 32 H 1.09002 * 109.47408 * 89.99995 * 21 20 19 33 33 H 1.09001 * 109.46971 * 210.00190 * 21 20 19 34 34 H 1.08998 * 109.47213 * 329.99663 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1088 2.5700 10 1 2.8755 -1.3273 2.2633 11 1 3.7937 0.2347 3.8751 12 1 1.7877 0.8074 2.6387 13 8 1.6558 2.0918 -1.2406 14 6 0.4676 2.7282 -1.2559 15 8 -0.2283 2.7398 -0.2598 16 6 0.0128 3.4096 -2.4797 17 6 -1.1624 4.0923 -2.6218 18 6 -1.1988 4.5768 -3.9341 19 6 -0.0268 4.1722 -4.5396 20 6 0.3702 4.4574 -5.9201 21 6 1.6868 3.9468 -6.4463 22 8 -0.3609 5.1047 -6.6403 23 8 0.6882 3.4689 -3.6411 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 5.8770 0.4825 2.1131 30 1 -1.9208 4.2296 -1.8653 31 1 -1.9892 5.1589 -4.3846 32 1 1.5446 2.9587 -6.8841 33 1 2.0637 4.6304 -7.2070 34 1 2.4044 3.8820 -5.6285 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774260608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:07 Heat of formation + Delta-G solvation = -122.922397 kcal Electronic energy + Delta-G solvation = -19961.527805 eV Core-core repulsion = 16633.253532 eV Total energy + Delta-G solvation = -3328.274273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.97382 -41.47867 -40.31604 -37.99639 -35.61492 -34.40628 -33.97220 -32.40242 -30.58073 -29.74295 -26.29389 -24.71121 -23.46509 -22.69884 -21.83377 -21.13403 -19.87537 -18.72695 -18.39520 -18.01617 -17.67906 -17.12574 -16.51268 -16.08790 -15.75301 -15.31899 -14.98760 -14.63848 -14.59665 -14.25702 -14.21512 -13.88387 -13.68971 -13.26657 -13.20477 -13.13939 -13.13561 -12.59855 -12.13011 -11.99204 -11.58376 -11.43163 -11.33836 -11.29202 -11.20202 -10.77399 -10.08973 -8.45287 -6.55287 -0.86769 0.43019 1.03272 1.24807 1.32413 1.41894 1.55071 1.68169 1.81809 2.19546 2.81960 2.86757 3.53649 3.59893 3.94927 4.06336 4.13520 4.17009 4.24490 4.26645 4.48578 4.51797 4.57958 4.67006 4.90974 4.93367 4.98087 5.01728 5.10633 5.23457 5.28956 5.43211 5.49210 6.04881 6.15835 6.48160 6.63087 7.08758 8.70539 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.004895 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.309756 B = 5718.947021 C = 6308.643372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.148 4.148 3 C 0.201 3.799 4 H 0.040 0.960 5 C -0.544 4.544 6 H 0.045 0.955 7 C 0.033 3.967 8 N -0.929 5.929 9 Si 0.937 3.063 10 H -0.249 1.249 11 H -0.284 1.284 12 H -0.250 1.250 13 O -0.343 6.343 14 C 0.536 3.464 15 O -0.499 6.499 16 C -0.038 4.038 17 C -0.113 4.113 18 C -0.127 4.127 19 C -0.083 4.083 20 C 0.448 3.552 21 C -0.195 4.195 22 O -0.458 6.458 23 O -0.139 6.139 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.276 0.724 30 H 0.193 0.807 31 H 0.198 0.802 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 3.706 -10.911 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.186 4.186 3 C 0.147 3.853 4 H 0.058 0.942 5 C -0.581 4.581 6 H 0.064 0.936 7 C -0.167 4.167 8 N -0.567 5.567 9 Si 0.761 3.239 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.174 1.174 13 O -0.259 6.259 14 C 0.380 3.620 15 O -0.390 6.390 16 C -0.090 4.090 17 C -0.132 4.132 18 C -0.146 4.146 19 C -0.135 4.135 20 C 0.327 3.673 21 C -0.252 4.252 22 O -0.334 6.334 23 O -0.034 6.034 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.210 0.790 31 H 0.215 0.785 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.308 3.830 -10.928 17.640 hybrid contribution 0.199 -0.312 1.009 1.075 sum -13.109 3.518 -9.919 16.811 Atomic orbital electron populations 1.21843 0.94316 1.02398 1.01535 1.22300 0.96696 0.97100 1.02458 1.20855 0.94274 0.90015 0.80157 0.94234 1.20934 0.89511 1.40292 1.07405 0.93640 1.25555 0.96102 0.95420 0.99628 1.69951 1.10479 1.45249 1.31005 0.86024 0.79484 0.80392 0.77958 1.17446 1.21073 1.17386 1.86642 1.34648 1.62590 1.41993 1.19714 0.80381 0.76180 0.85687 1.90858 1.55802 1.59078 1.33213 1.21294 0.95317 1.07397 0.85024 1.22280 0.96074 0.96210 0.98644 1.22787 0.98090 1.00923 0.92844 1.23958 0.94217 1.01521 0.93811 1.21628 0.88712 0.75549 0.81428 1.22299 0.93323 1.05228 1.04320 1.90634 1.54448 1.32244 1.56067 1.84164 1.43170 1.57103 1.18942 0.92816 0.93660 0.90423 0.90812 0.91810 0.91459 0.79004 0.78466 0.85942 0.87039 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.56 71.98 0.62 -4.44 16 2 C -0.15 -6.28 5.15 30.60 0.16 -6.12 16 3 C 0.20 9.84 1.84 29.85 0.06 9.89 16 4 H 0.04 2.01 6.22 -2.39 -0.01 2.00 16 5 C -0.54 -31.41 9.48 25.60 0.24 -31.17 16 6 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 7 C 0.03 1.88 5.45 84.65 0.46 2.34 16 8 N -0.93 -56.03 13.96 21.44 0.30 -55.73 16 9 Si 0.94 42.65 24.41 68.60 1.67 44.32 16 10 H -0.25 -10.44 6.83 99.48 0.68 -9.76 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.25 -10.91 6.53 99.48 0.65 -10.26 16 13 O -0.34 -15.67 9.82 -55.72 -0.55 -16.22 16 14 C 0.54 20.83 6.41 70.20 0.45 21.28 16 15 O -0.50 -20.05 14.04 19.78 0.28 -19.77 16 16 C -0.04 -1.19 7.18 24.28 0.17 -1.01 16 17 C -0.11 -2.65 10.58 22.31 0.24 -2.41 16 18 C -0.13 -2.60 10.66 22.62 0.24 -2.36 16 19 C -0.08 -1.94 7.07 24.35 0.17 -1.77 16 20 C 0.45 9.09 7.23 27.83 0.20 9.29 16 21 C -0.20 -2.85 10.17 71.24 0.72 -2.13 16 22 O -0.46 -10.93 17.62 -3.21 -0.06 -10.98 16 23 O -0.14 -4.09 10.42 -7.30 -0.08 -4.17 16 24 H 0.05 1.93 7.79 -2.39 -0.02 1.91 16 25 H 0.04 1.57 6.06 -2.39 -0.01 1.55 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.06 2.73 3.21 -2.39 -0.01 2.72 16 29 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.47 7.96 -2.39 -0.02 1.45 16 Total: -1.00 -68.08 296.81 6.35 -61.73 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.04 Total: 9.44 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 3.73 Total: -8.61 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.30 Total: -55.73 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.40 Total: -51.14 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.67 Total: 44.32 kcal Total: -68.08 6.35 -61.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774260608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.192 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds