Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99825 * 3 2 1 5 5 H 1.48489 * 109.47350 * 29.99828 * 3 2 1 6 6 H 1.48498 * 109.47064 * 150.00169 * 3 2 1 7 7 C 1.37883 * 119.99348 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99623 * 173.75454 * 7 2 1 9 9 C 1.50703 * 120.00399 * 353.74601 * 7 2 1 10 10 O 1.45207 * 112.84464 * 62.61613 * 9 7 2 11 11 C 1.34225 * 116.99515 * 65.18927 * 10 9 7 12 12 O 1.20821 * 120.00358 * 357.70370 * 11 10 9 13 13 C 1.50699 * 119.99690 * 177.69679 * 11 10 9 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47177 * 180.02562 * 14 13 11 16 16 F 1.39902 * 109.47469 * 60.00109 * 15 14 13 17 17 F 1.39900 * 109.47177 * 180.02562 * 15 14 13 18 18 F 1.39902 * 109.46882 * 299.99675 * 15 14 13 19 19 C 1.53780 * 113.61617 * 193.81490 * 9 7 2 20 20 C 1.53953 * 87.01850 * 89.22915 * 19 9 7 21 21 C 1.53778 * 113.61310 * 291.42607 * 9 7 2 22 22 H 0.97001 * 119.99179 * 5.02436 * 1 2 3 23 23 H 1.09009 * 109.47142 * 60.00326 * 13 11 10 24 24 H 1.08999 * 109.47521 * 300.00914 * 13 11 10 25 25 H 1.09001 * 109.46989 * 300.00244 * 14 13 11 26 26 H 1.08998 * 109.47447 * 60.00205 * 14 13 11 27 27 H 1.08996 * 113.61197 * 203.75266 * 19 9 7 28 28 H 1.08998 * 113.61274 * 334.65375 * 19 9 7 29 29 H 1.08995 * 113.53971 * 270.80742 * 20 19 9 30 30 H 1.09000 * 113.73988 * 139.94514 * 20 19 9 31 31 H 1.08995 * 113.62148 * 25.34231 * 21 9 7 32 32 H 1.08996 * 113.61510 * 156.16912 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0797 -1.1970 -0.1023 9 6 1.2576 -2.4955 0.1411 10 8 0.3347 -2.7377 -0.9535 11 6 0.8681 -2.9148 -2.1724 12 8 2.0632 -2.8278 -2.3273 13 6 -0.0236 -3.2224 -3.3476 14 6 0.8294 -3.3769 -4.6084 15 6 -0.0761 -3.6886 -5.8017 16 9 -0.9879 -2.6428 -5.9809 17 9 0.7039 -3.8305 -6.9544 18 9 -0.7720 -4.8781 -5.5608 19 6 2.1654 -3.6954 0.4585 20 6 1.9586 -3.3558 1.9458 21 6 0.6317 -2.6984 1.5309 22 1 -0.4849 0.8369 -0.0736 23 1 -0.7346 -2.4080 -3.4872 24 1 -0.5653 -4.1494 -3.1600 25 1 1.3713 -2.4501 -4.7962 26 1 1.5401 -4.1915 -4.4687 27 1 1.7389 -4.6549 0.1663 28 1 3.1933 -3.5671 0.1193 29 1 2.6916 -2.6505 2.3373 30 1 1.8318 -4.2314 2.5824 31 1 0.4232 -1.7664 2.0563 32 1 -0.2158 -3.3837 1.5323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857421.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -231.666773 kcal Electronic energy + Delta-G solvation = -20927.362544 eV Core-core repulsion = 17052.516021 eV Total energy + Delta-G solvation = -3874.846523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.06557 -47.57082 -47.53104 -39.41864 -37.30252 -34.34536 -33.41655 -32.34040 -27.36164 -26.07176 -24.61040 -23.36911 -22.31608 -19.86956 -18.61804 -18.51582 -18.32406 -17.52452 -16.68615 -15.51464 -15.33862 -15.16050 -14.75413 -14.45168 -14.35054 -13.99230 -13.94962 -13.70588 -13.69601 -13.30555 -13.07412 -12.31994 -12.09844 -11.66819 -11.59864 -11.29078 -11.08649 -11.06724 -10.90135 -10.48655 -10.32442 -9.95855 -9.86779 -9.40386 -8.85220 -8.60960 -8.57755 -6.15990 -4.28254 2.77344 3.22748 3.30095 3.33607 3.37836 3.64132 3.99236 4.12538 4.29193 4.33548 4.93664 5.10378 5.14015 5.49579 5.66002 5.72120 5.84793 5.87900 5.96904 6.12771 6.38705 6.46903 6.59369 6.86937 7.06500 7.24725 7.49388 7.73538 7.88165 8.28690 8.75629 9.11706 9.42041 10.88269 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.006001 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.424087 B = 4664.386360 C = 5368.207440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.075 3.925 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.240 3.760 10 O -0.341 6.341 11 C 0.467 3.533 12 O -0.513 6.513 13 C -0.124 4.124 14 C -0.152 4.152 15 C 0.453 3.547 16 F -0.183 7.183 17 F -0.186 7.186 18 F -0.185 7.185 19 C -0.159 4.159 20 C -0.132 4.132 21 C -0.109 4.109 22 H 0.263 0.737 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -6.892 -6.561 9.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.257 6.257 11 C 0.309 3.691 12 O -0.403 6.403 13 C -0.162 4.162 14 C -0.190 4.190 15 C 0.399 3.601 16 F -0.165 7.165 17 F -0.168 7.168 18 F -0.167 7.167 19 C -0.196 4.196 20 C -0.169 4.169 21 C -0.146 4.146 22 H 0.073 0.927 23 H 0.127 0.873 24 H 0.122 0.878 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.258 -6.742 -6.494 9.445 hybrid contribution 0.281 0.945 -0.360 1.050 sum -0.977 -5.797 -6.853 9.030 Atomic orbital electron populations 1.70036 1.05843 1.27139 1.46679 1.25087 0.94891 0.99362 0.93749 0.86563 0.80083 0.82944 0.78396 1.20480 1.20960 1.19505 1.20949 0.93646 0.88715 1.51890 0.91375 1.21223 0.85224 0.92285 0.80615 1.86487 1.44207 1.78818 1.16195 1.22429 0.87474 0.74159 0.85045 1.90569 1.16757 1.47213 1.85762 1.21263 0.98631 1.05602 0.90753 1.22643 0.97789 1.08089 0.90484 1.20640 0.80180 0.74159 0.85078 1.93192 1.69224 1.58048 1.95987 1.93176 1.74625 1.95656 1.53295 1.93173 1.80958 1.48236 1.94328 1.23552 1.01237 0.98465 0.96381 1.22568 0.99221 0.99453 0.95697 1.22909 0.95101 0.99942 0.96682 0.92670 0.87284 0.87804 0.86359 0.86593 0.92237 0.91782 0.90216 0.92942 0.90723 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.71 12.78 55.43 0.71 -23.00 16 2 C 0.08 2.02 5.29 -17.82 -0.09 1.93 16 3 Si 0.89 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -13.89 7.08 -34.44 -0.24 -14.14 16 8 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.24 5.89 0.47 -90.96 -0.04 5.85 16 10 O -0.34 -8.30 9.76 -39.25 -0.38 -8.68 16 11 C 0.47 10.07 7.52 36.00 0.27 10.34 16 12 O -0.51 -12.13 14.43 -18.75 -0.27 -12.40 16 13 C -0.12 -1.96 5.57 -27.88 -0.16 -2.11 16 14 C -0.15 -2.04 4.55 -26.73 -0.12 -2.17 16 15 C 0.45 5.73 3.16 37.16 0.12 5.85 16 16 F -0.18 -2.48 16.80 2.25 0.04 -2.44 16 17 F -0.19 -2.37 17.32 2.25 0.04 -2.33 16 18 F -0.19 -2.35 16.80 2.25 0.04 -2.32 16 19 C -0.16 -3.40 6.56 -25.83 -0.17 -3.57 16 20 C -0.13 -2.59 7.81 -25.83 -0.20 -2.79 16 21 C -0.11 -2.43 7.28 -25.92 -0.19 -2.61 16 22 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 23 H 0.11 1.69 7.80 -51.92 -0.41 1.29 16 24 H 0.10 1.40 7.80 -51.93 -0.41 1.00 16 25 H 0.12 1.64 8.10 -51.93 -0.42 1.22 16 26 H 0.12 1.46 8.10 -51.93 -0.42 1.04 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.41 8.09 -51.93 -0.42 1.00 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.79 7.97 -51.93 -0.41 1.38 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -29.30 290.59 -5.02 -34.32 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.72 Total: 0.01 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.83 Total: -3.42 kcal Atomic # 7 Polarization: -23.71 SS G_CDS: 0.71 Total: -23.00 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.65 Total: -21.08 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.11 Total: -7.09 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.30 -5.02 -34.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857421.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.346 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds