Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99825 * 3 2 1 5 5 H 1.48489 * 109.47350 * 29.99828 * 3 2 1 6 6 H 1.48498 * 109.47064 * 150.00169 * 3 2 1 7 7 C 1.37883 * 119.99348 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99623 * 173.75454 * 7 2 1 9 9 C 1.50703 * 120.00399 * 353.74601 * 7 2 1 10 10 O 1.45207 * 112.84464 * 62.61613 * 9 7 2 11 11 C 1.34225 * 116.99515 * 65.18927 * 10 9 7 12 12 O 1.20821 * 120.00358 * 357.70370 * 11 10 9 13 13 C 1.50699 * 119.99690 * 177.69679 * 11 10 9 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47177 * 180.02562 * 14 13 11 16 16 F 1.39902 * 109.47469 * 60.00109 * 15 14 13 17 17 F 1.39900 * 109.47177 * 180.02562 * 15 14 13 18 18 F 1.39902 * 109.46882 * 299.99675 * 15 14 13 19 19 C 1.53780 * 113.61617 * 193.81490 * 9 7 2 20 20 C 1.53953 * 87.01850 * 89.22915 * 19 9 7 21 21 C 1.53778 * 113.61310 * 291.42607 * 9 7 2 22 22 H 0.97001 * 119.99179 * 5.02436 * 1 2 3 23 23 H 1.09009 * 109.47142 * 60.00326 * 13 11 10 24 24 H 1.08999 * 109.47521 * 300.00914 * 13 11 10 25 25 H 1.09001 * 109.46989 * 300.00244 * 14 13 11 26 26 H 1.08998 * 109.47447 * 60.00205 * 14 13 11 27 27 H 1.08996 * 113.61197 * 203.75266 * 19 9 7 28 28 H 1.08998 * 113.61274 * 334.65375 * 19 9 7 29 29 H 1.08995 * 113.53971 * 270.80742 * 20 19 9 30 30 H 1.09000 * 113.73988 * 139.94514 * 20 19 9 31 31 H 1.08995 * 113.62148 * 25.34231 * 21 9 7 32 32 H 1.08996 * 113.61510 * 156.16912 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0797 -1.1970 -0.1023 9 6 1.2576 -2.4955 0.1411 10 8 0.3347 -2.7377 -0.9535 11 6 0.8681 -2.9148 -2.1724 12 8 2.0632 -2.8278 -2.3273 13 6 -0.0236 -3.2224 -3.3476 14 6 0.8294 -3.3769 -4.6084 15 6 -0.0761 -3.6886 -5.8017 16 9 -0.9879 -2.6428 -5.9809 17 9 0.7039 -3.8305 -6.9544 18 9 -0.7720 -4.8781 -5.5608 19 6 2.1654 -3.6954 0.4585 20 6 1.9586 -3.3558 1.9458 21 6 0.6317 -2.6984 1.5309 22 1 -0.4849 0.8369 -0.0736 23 1 -0.7346 -2.4080 -3.4872 24 1 -0.5653 -4.1494 -3.1600 25 1 1.3713 -2.4501 -4.7962 26 1 1.5401 -4.1915 -4.4687 27 1 1.7389 -4.6549 0.1663 28 1 3.1933 -3.5671 0.1193 29 1 2.6916 -2.6505 2.3373 30 1 1.8318 -4.2314 2.5824 31 1 0.4232 -1.7664 2.0563 32 1 -0.2158 -3.3837 1.5323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857421.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -246.980265 kcal Electronic energy + Delta-G solvation = -20928.026587 eV Core-core repulsion = 17052.516021 eV Total energy + Delta-G solvation = -3875.510566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.10178 -48.60025 -48.56954 -41.16328 -39.01223 -36.09716 -34.72815 -34.36710 -28.76562 -27.91287 -26.35114 -24.97269 -23.62475 -21.40682 -20.45358 -19.55398 -19.48554 -18.93518 -18.19172 -17.06971 -16.99487 -16.91269 -16.57314 -15.76940 -15.52085 -15.48108 -15.01963 -14.86711 -14.75535 -14.71120 -14.53003 -14.05319 -13.56946 -13.28289 -12.96410 -12.91241 -12.82425 -12.75515 -12.40904 -12.21036 -12.10559 -11.77417 -11.63726 -11.15858 -10.78436 -10.51968 -10.41662 -8.19177 -6.36868 1.35269 1.38213 1.47627 1.64964 1.71917 2.28380 2.36704 2.88068 3.01828 3.08910 3.18906 3.74199 3.95841 3.99847 4.03703 4.18426 4.34574 4.45239 4.63513 4.68753 4.81439 4.87318 4.94890 5.17480 5.38130 5.44323 5.64251 5.77224 6.03644 6.45595 6.68547 7.28880 7.42430 8.84423 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.006001 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.424087 B = 4664.386360 C = 5368.207440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.035 3.965 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.215 3.785 10 O -0.358 6.358 11 C 0.456 3.544 12 O -0.540 6.540 13 C -0.114 4.114 14 C -0.146 4.146 15 C 0.465 3.535 16 F -0.187 7.187 17 F -0.184 7.184 18 F -0.182 7.182 19 C -0.151 4.151 20 C -0.114 4.114 21 C -0.109 4.109 22 H 0.265 0.735 23 H 0.113 0.887 24 H 0.131 0.869 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.584 -7.666 -6.773 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.169 4.169 3 Si 0.771 3.229 4 H -0.207 1.207 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.067 0.933 9 C 0.181 3.819 10 O -0.274 6.274 11 C 0.300 3.700 12 O -0.431 6.431 13 C -0.152 4.152 14 C -0.184 4.184 15 C 0.411 3.589 16 F -0.169 7.169 17 F -0.166 7.166 18 F -0.164 7.164 19 C -0.189 4.189 20 C -0.151 4.151 21 C -0.147 4.147 22 H 0.074 0.926 23 H 0.131 0.869 24 H 0.149 0.851 25 H 0.131 0.869 26 H 0.144 0.856 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.419 -7.522 -6.707 10.177 hybrid contribution 0.336 1.149 -0.333 1.243 sum -1.083 -6.373 -7.040 9.557 Atomic orbital electron populations 1.70110 1.06732 1.27742 1.47561 1.25694 0.95649 1.01973 0.93570 0.85741 0.79177 0.79784 0.78163 1.20689 1.20059 1.19199 1.21075 0.92980 0.90504 1.52158 0.93280 1.21424 0.86369 0.92570 0.81552 1.86457 1.44430 1.79172 1.17354 1.23435 0.88007 0.73093 0.85476 1.90546 1.18222 1.48328 1.86035 1.21277 0.97923 1.06933 0.89025 1.22568 0.97721 1.08363 0.89775 1.20340 0.79790 0.74053 0.84666 1.93190 1.69364 1.58334 1.95990 1.93183 1.74622 1.95638 1.53125 1.93184 1.80867 1.48038 1.94299 1.23478 0.99785 0.98025 0.97581 1.22493 0.97096 1.00362 0.95130 1.22895 0.96901 0.99426 0.95444 0.92618 0.86928 0.85111 0.86928 0.85564 0.90581 0.93195 0.90767 0.89067 0.93182 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.09 12.78 21.45 0.27 -48.82 16 2 C 0.03 1.88 5.29 84.66 0.45 2.33 16 3 Si 0.95 43.15 29.55 68.60 2.03 45.17 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.53 -28.96 7.08 25.60 0.18 -28.78 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.21 10.52 0.47 -11.01 -0.01 10.52 16 10 O -0.36 -17.33 9.76 -51.37 -0.50 -17.83 16 11 C 0.46 19.44 7.52 71.24 0.54 19.97 16 12 O -0.54 -25.55 14.43 21.98 0.32 -25.24 16 13 C -0.11 -3.40 5.57 29.85 0.17 -3.24 16 14 C -0.15 -3.69 4.55 30.59 0.14 -3.55 16 15 C 0.47 10.81 3.16 71.98 0.23 11.04 16 16 F -0.19 -4.73 16.80 44.97 0.76 -3.97 16 17 F -0.18 -4.34 17.32 44.97 0.78 -3.56 16 18 F -0.18 -4.18 16.80 44.97 0.76 -3.42 16 19 C -0.15 -6.32 6.56 31.18 0.20 -6.12 16 20 C -0.11 -4.25 7.81 31.18 0.24 -4.01 16 21 C -0.11 -4.79 7.28 31.12 0.23 -4.57 16 22 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 23 H 0.11 3.33 7.80 -2.38 -0.02 3.31 16 24 H 0.13 3.20 7.80 -2.39 -0.02 3.18 16 25 H 0.11 3.01 8.10 -2.39 -0.02 2.99 16 26 H 0.13 2.95 8.10 -2.39 -0.02 2.93 16 27 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.05 2.19 8.09 -2.39 -0.02 2.17 16 29 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.05 2.41 7.97 -2.39 -0.02 2.39 16 32 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -62.41 290.59 7.91 -54.51 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.13 Total: 9.56 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 2.37 Total: -6.40 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.27 Total: -48.82 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.18 Total: -43.07 kcal Atomic # 9 Polarization: -13.24 SS G_CDS: 2.29 Total: -10.95 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -62.41 7.91 -54.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857421.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.474 kcal (2) G-P(sol) polarization free energy of solvation -62.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds