Wall clock time and date at job start Mon Mar 30 2020 06:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 O 1.20822 * 120.00226 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99763 * 180.02562 * 11 10 9 14 14 C 1.45198 * 117.00173 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47372 * 179.97438 * 14 13 11 16 16 C 1.52996 * 115.54843 * 34.33054 * 15 14 13 17 17 F 1.39901 * 109.47358 * 85.58370 * 16 15 14 18 18 F 1.39896 * 109.47325 * 205.58477 * 16 15 14 19 19 F 1.39902 * 109.47066 * 325.58157 * 16 15 14 20 20 C 1.52997 * 117.49795 * 248.62549 * 15 14 13 21 21 C 1.52992 * 117.49999 * 180.02562 * 15 14 13 22 22 H 0.96991 * 119.99891 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 24 24 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 25 25 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 26 26 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 27 27 H 1.09003 * 109.47123 * 300.00357 * 14 13 11 28 28 H 1.09003 * 109.46718 * 60.00123 * 14 13 11 29 29 H 1.08999 * 117.50351 * 359.97438 * 20 15 14 30 30 H 1.09001 * 117.50209 * 145.02431 * 20 15 14 31 31 H 1.09003 * 117.50151 * 214.97842 * 21 15 14 32 32 H 1.09004 * 117.49668 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5287 -2.6364 -0.0009 12 8 6.1328 -1.5900 -0.0005 13 8 6.1999 -3.7988 -0.0014 14 6 7.6498 -3.7228 -0.0007 15 6 8.2347 -5.1367 -0.0006 16 6 7.4339 -6.1820 -0.7796 17 9 7.8072 -6.1461 -2.1275 18 9 7.6944 -7.4534 -0.2573 19 9 6.0678 -5.9024 -0.6665 20 6 8.9612 -5.6005 1.2634 21 6 9.7587 -5.2707 0.0006 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.6579 -3.1504 -0.8908 26 1 3.6586 -3.1502 0.8892 27 1 7.9862 -3.1901 -0.8902 28 1 7.9853 -3.1912 0.8898 29 1 9.0230 -4.8984 2.0948 30 1 8.8688 -6.6507 1.5403 31 1 10.1912 -6.1038 -0.5535 32 1 10.3448 -4.3516 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813071225.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:41 Heat of formation + Delta-G solvation = -221.850558 kcal Electronic energy + Delta-G solvation = -20498.141128 eV Core-core repulsion = 16623.720268 eV Total energy + Delta-G solvation = -3874.420860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.13544 -47.73018 -47.49975 -40.22321 -38.29460 -36.04516 -33.62939 -31.45464 -28.72324 -26.75303 -25.87251 -23.12765 -21.93345 -20.94444 -19.82125 -18.50484 -18.35743 -17.92665 -17.43192 -16.54587 -16.28180 -15.75970 -14.87999 -14.50334 -14.38243 -14.17151 -14.06781 -14.04397 -13.77297 -13.70315 -13.63226 -12.87900 -12.68569 -12.53169 -12.07326 -11.77631 -11.43862 -11.20931 -11.13887 -11.01914 -10.39776 -10.33822 -10.16140 -9.94946 -9.71405 -9.26045 -8.55877 -6.07196 -4.07111 2.51008 2.58928 2.64021 2.98959 3.33863 3.40774 3.49399 3.59050 3.75656 4.03305 4.10564 4.45871 4.46638 4.60417 5.00118 5.04925 5.10633 5.13480 5.27447 5.32012 5.46787 5.50183 6.00009 6.02252 6.43965 6.72117 7.22803 7.30197 7.70340 8.14643 8.47015 8.95450 9.54465 11.05465 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.004207 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.838106 B = 6654.170275 C = 7046.950571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.460 3.540 12 O -0.512 6.512 13 O -0.351 6.351 14 C 0.104 3.896 15 C -0.206 4.206 16 C 0.492 3.508 17 F -0.182 7.182 18 F -0.185 7.185 19 F -0.153 7.153 20 C -0.142 4.142 21 C -0.137 4.137 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.551 -13.227 0.755 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.039 4.039 10 C -0.132 4.132 11 C 0.304 3.696 12 O -0.399 6.399 13 O -0.268 6.268 14 C 0.029 3.971 15 C -0.208 4.208 16 C 0.437 3.563 17 F -0.164 7.164 18 F -0.167 7.167 19 F -0.134 7.134 20 C -0.179 4.179 21 C -0.174 4.174 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.575 -12.824 0.735 24.255 hybrid contribution 0.314 0.804 -0.216 0.890 sum 20.889 -12.020 0.520 24.106 Atomic orbital electron populations 1.69901 1.06276 1.27069 1.50627 1.24950 0.94711 0.99167 0.94231 0.86806 0.80554 0.83455 0.78782 1.20159 1.21309 1.18639 1.21031 0.88822 0.94830 1.51804 0.90612 1.19487 0.96954 0.89603 0.97888 1.21555 0.83161 1.03491 1.05018 1.24812 0.92810 0.80755 0.71234 1.90621 1.70648 1.33073 1.45577 1.86739 1.19341 1.36007 1.84752 1.22252 0.79321 0.91639 1.03851 1.22552 0.96548 0.95751 1.05931 1.19204 0.79331 0.80222 0.77496 1.93187 1.91409 1.96451 1.35305 1.93146 1.93989 1.43012 1.86521 1.93309 1.31497 1.92977 1.95598 1.23379 0.99248 1.04187 0.91057 1.23181 0.88549 1.04995 1.00647 0.92591 0.95628 0.96060 0.88206 0.88196 0.89990 0.89565 0.86608 0.86671 0.86970 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.00 -0.04 3.33 -27.88 -0.09 -0.14 16 10 C -0.09 -1.87 5.75 -27.88 -0.16 -2.03 16 11 C 0.46 8.49 7.96 36.01 0.29 8.78 16 12 O -0.51 -10.66 15.73 -18.75 -0.29 -10.96 16 13 O -0.35 -5.47 7.29 -39.26 -0.29 -5.76 16 14 C 0.10 1.25 5.59 37.16 0.21 1.46 16 15 C -0.21 -2.01 2.30 -154.52 -0.36 -2.36 16 16 C 0.49 5.77 3.19 37.16 0.12 5.89 16 17 F -0.18 -2.21 17.27 2.25 0.04 -2.17 16 18 F -0.19 -2.03 15.90 2.25 0.04 -1.99 16 19 F -0.15 -2.19 14.37 2.25 0.03 -2.16 16 20 C -0.14 -0.98 9.56 -26.76 -0.26 -1.24 16 21 C -0.14 -0.87 9.90 -26.76 -0.26 -1.13 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 24 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 25 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 26 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 27 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.09 0.94 7.89 -51.93 -0.41 0.53 16 29 H 0.12 0.68 8.05 -51.93 -0.42 0.26 16 30 H 0.12 0.74 7.22 -51.93 -0.38 0.37 16 31 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 290.31 15.07 4.37 4.37 Total: -1.00 -32.44 290.31 -4.61 -37.05 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: -3.66 Total: -4.93 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -0.95 Total: -4.04 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.89 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.58 Total: -16.72 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.11 Total: -6.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.44 -4.61 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813071225.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.804 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds