Wall clock time and date at job start Mon Mar 30 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 O 1.20822 * 120.00226 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99763 * 180.02562 * 11 10 9 14 14 C 1.45198 * 117.00173 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47372 * 179.97438 * 14 13 11 16 16 C 1.52996 * 115.54843 * 34.33054 * 15 14 13 17 17 F 1.39901 * 109.47358 * 85.58370 * 16 15 14 18 18 F 1.39896 * 109.47325 * 205.58477 * 16 15 14 19 19 F 1.39902 * 109.47066 * 325.58157 * 16 15 14 20 20 C 1.52997 * 117.49795 * 248.62549 * 15 14 13 21 21 C 1.52992 * 117.49999 * 180.02562 * 15 14 13 22 22 H 0.96991 * 119.99891 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 24 24 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 25 25 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 26 26 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 27 27 H 1.09003 * 109.47123 * 300.00357 * 14 13 11 28 28 H 1.09003 * 109.46718 * 60.00123 * 14 13 11 29 29 H 1.08999 * 117.50351 * 359.97438 * 20 15 14 30 30 H 1.09001 * 117.50209 * 145.02431 * 20 15 14 31 31 H 1.09003 * 117.50151 * 214.97842 * 21 15 14 32 32 H 1.09004 * 117.49668 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5287 -2.6364 -0.0009 12 8 6.1328 -1.5900 -0.0005 13 8 6.1999 -3.7988 -0.0014 14 6 7.6498 -3.7228 -0.0007 15 6 8.2347 -5.1367 -0.0006 16 6 7.4339 -6.1820 -0.7796 17 9 7.8072 -6.1461 -2.1275 18 9 7.6944 -7.4534 -0.2573 19 9 6.0678 -5.9024 -0.6665 20 6 8.9612 -5.6005 1.2634 21 6 9.7587 -5.2707 0.0006 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.6579 -3.1504 -0.8908 26 1 3.6586 -3.1502 0.8892 27 1 7.9862 -3.1901 -0.8902 28 1 7.9853 -3.1912 0.8898 29 1 9.0230 -4.8984 2.0948 30 1 8.8688 -6.6507 1.5403 31 1 10.1912 -6.1038 -0.5535 32 1 10.3448 -4.3516 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813071225.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:40 Heat of formation + Delta-G solvation = -240.613984 kcal Electronic energy + Delta-G solvation = -20498.954771 eV Core-core repulsion = 16623.720268 eV Total energy + Delta-G solvation = -3875.234503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.05393 -48.62401 -48.48927 -41.56799 -39.09435 -37.30659 -35.63599 -33.45369 -29.79177 -28.15896 -27.14665 -23.79450 -23.55124 -21.81496 -21.39698 -19.46627 -19.36259 -19.24595 -18.83006 -18.07134 -17.60587 -16.85060 -16.29177 -15.82169 -15.50575 -15.42970 -15.19315 -14.99868 -14.77835 -14.70031 -14.66823 -14.54675 -14.16173 -14.00405 -13.37218 -12.94339 -12.60125 -12.53892 -12.24711 -12.15933 -12.01834 -11.85761 -11.78395 -11.45912 -11.36530 -11.24417 -10.78872 -8.31687 -6.36364 1.18349 1.35228 1.36833 1.49990 1.50990 1.71409 2.25263 2.34898 2.78178 2.91321 3.03707 3.27873 3.36308 3.72068 3.80541 3.96235 4.22040 4.26110 4.36692 4.38373 4.52708 4.62202 4.83303 4.86578 5.04805 5.22859 5.32229 5.35904 5.58306 6.21371 6.67937 6.77546 7.28869 8.84101 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.004207 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.838106 B = 6654.170275 C = 7046.950571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.003 3.997 10 C -0.093 4.093 11 C 0.472 3.528 12 O -0.538 6.538 13 O -0.349 6.349 14 C 0.098 3.902 15 C -0.230 4.230 16 C 0.485 3.515 17 F -0.188 7.188 18 F -0.182 7.182 19 F -0.174 7.174 20 C -0.131 4.131 21 C -0.115 4.115 22 H 0.268 0.732 23 H 0.020 0.980 24 H 0.016 0.984 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.068 -13.250 1.181 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.571 4.571 8 H 0.067 0.933 9 C -0.034 4.034 10 C -0.130 4.130 11 C 0.317 3.683 12 O -0.427 6.427 13 O -0.266 6.266 14 C 0.025 3.975 15 C -0.232 4.232 16 C 0.431 3.569 17 F -0.169 7.169 18 F -0.163 7.163 19 F -0.155 7.155 20 C -0.168 4.168 21 C -0.151 4.151 22 H 0.077 0.923 23 H 0.038 0.962 24 H 0.035 0.965 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 23.110 -12.882 1.160 26.484 hybrid contribution -0.446 0.658 -0.356 0.871 sum 22.664 -12.224 0.804 25.763 Atomic orbital electron populations 1.70025 1.07951 1.28252 1.52137 1.25822 0.95504 1.02994 0.94022 0.85791 0.79361 0.79115 0.79238 1.19285 1.20403 1.17984 1.21344 0.90988 0.93872 1.50942 0.93308 1.19319 0.94311 0.92609 0.97205 1.21330 0.84819 1.00690 1.06187 1.24253 0.92250 0.81068 0.70747 1.90609 1.71065 1.34060 1.47004 1.86701 1.21796 1.34133 1.83961 1.22579 0.76788 0.93597 1.04580 1.22520 0.98314 0.93791 1.08528 1.19550 0.78701 0.81002 0.77605 1.93172 1.91317 1.96523 1.35910 1.93147 1.93856 1.42907 1.86405 1.93262 1.33350 1.93167 1.95707 1.23551 0.97522 1.04808 0.90922 1.23404 0.85984 1.06166 0.99558 0.92272 0.96167 0.96519 0.87351 0.86959 0.90010 0.88182 0.85204 0.86194 0.85928 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.01 0.85 5.47 84.65 0.46 1.31 16 3 Si 0.94 45.48 27.47 68.60 1.88 47.36 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 7 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 8 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 9 C 0.00 0.15 3.33 29.85 0.10 0.25 16 10 C -0.09 -3.60 5.75 29.85 0.17 -3.43 16 11 C 0.47 16.89 7.96 71.24 0.57 17.45 16 12 O -0.54 -21.70 15.73 21.98 0.35 -21.35 16 13 O -0.35 -10.44 7.29 -51.41 -0.37 -10.81 16 14 C 0.10 2.17 5.59 71.98 0.40 2.57 16 15 C -0.23 -3.94 2.30 -52.19 -0.12 -4.06 16 16 C 0.49 10.76 3.19 71.98 0.23 10.99 16 17 F -0.19 -4.36 17.27 44.97 0.78 -3.59 16 18 F -0.18 -3.71 15.90 44.97 0.71 -2.99 16 19 F -0.17 -4.88 14.37 44.97 0.65 -4.24 16 20 C -0.13 -1.40 9.56 30.58 0.29 -1.11 16 21 C -0.11 -1.06 9.90 30.58 0.30 -0.76 16 22 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.02 0.99 7.16 -2.38 -0.02 0.97 16 24 H 0.02 0.81 7.53 -2.39 -0.02 0.79 16 25 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 26 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 27 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 28 H 0.10 1.93 7.89 -2.39 -0.02 1.91 16 29 H 0.13 1.04 8.05 -2.39 -0.02 1.02 16 30 H 0.12 1.19 7.22 -2.39 -0.02 1.17 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -69.60 290.31 8.03 -61.57 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: 1.08 Total: -0.38 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 2.66 Total: -7.08 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.03 Total: -32.16 kcal Atomic # 9 Polarization: -12.95 SS G_CDS: 2.14 Total: -10.81 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Total: -69.60 8.03 -61.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813071225.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.047 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds