Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00313 * 2 1 4 4 H 1.48502 * 109.47268 * 270.00115 * 3 2 1 5 5 H 1.48506 * 109.47206 * 30.00127 * 3 2 1 6 6 H 1.48500 * 109.47197 * 150.00217 * 3 2 1 7 7 C 1.37882 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.20830 * 119.99820 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00242 * 180.02562 * 11 10 9 14 14 C 1.45195 * 117.00393 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.47130 * 29.99860 * 14 13 11 16 16 C 1.52996 * 109.47434 * 149.99773 * 14 13 11 17 17 C 1.53000 * 117.49997 * 300.00472 * 16 14 13 18 18 C 1.53002 * 60.02940 * 252.49592 * 17 16 14 19 19 C 1.52996 * 109.47348 * 270.00122 * 14 13 11 20 20 F 1.39904 * 109.47098 * 299.99912 * 19 14 13 21 21 F 1.39901 * 109.47187 * 59.99644 * 19 14 13 22 22 F 1.39903 * 109.47575 * 180.02562 * 19 14 13 23 23 H 0.97003 * 119.99505 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47175 * 60.00060 * 9 7 2 25 25 H 1.09001 * 109.47032 * 299.99859 * 9 7 2 26 26 H 1.08999 * 109.46872 * 60.00025 * 10 9 7 27 27 H 1.08998 * 109.47138 * 300.00489 * 10 9 7 28 28 H 1.09007 * 115.55004 * 85.67144 * 16 14 13 29 29 H 1.09002 * 117.49833 * 359.97438 * 17 16 14 30 30 H 1.09002 * 117.49953 * 144.99738 * 17 16 14 31 31 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 32 32 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0009 12 8 6.1326 -1.5904 -0.0005 13 8 6.1996 -3.7992 -0.0014 14 6 7.6495 -3.7233 -0.0019 15 1 7.9660 -2.8157 0.5120 16 6 8.2244 -4.9442 0.7190 17 6 7.8309 -5.1504 2.1831 18 6 9.2475 -4.6930 1.8296 19 6 8.1584 -3.6964 -1.4445 20 9 7.7522 -4.8615 -2.1040 21 9 7.6327 -2.5800 -2.1036 22 9 9.5555 -3.6239 -1.4450 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6806 0.8888 25 1 3.8745 -0.6802 -0.8912 26 1 3.6578 -3.1507 -0.8907 27 1 3.6584 -3.1504 0.8892 28 1 8.3577 -5.8340 0.1036 29 1 7.1627 -4.4160 2.6329 30 1 7.7052 -6.1758 2.5309 31 1 9.5110 -3.6578 2.0467 32 1 10.0536 -5.4175 1.9445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813075018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = -223.661922 kcal Electronic energy + Delta-G solvation = -20761.309175 eV Core-core repulsion = 16886.809768 eV Total energy + Delta-G solvation = -3874.499407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.21444 -47.74358 -47.67292 -40.52212 -37.97502 -36.12053 -33.71169 -31.58172 -30.23019 -26.56507 -24.30262 -22.78313 -22.14225 -21.16412 -20.02946 -18.77506 -18.46012 -18.27081 -17.59492 -16.87151 -16.04011 -15.74513 -14.93267 -14.64644 -14.52671 -14.31190 -14.12260 -14.10349 -13.82753 -13.80518 -13.47513 -12.99123 -12.61954 -12.42189 -12.09256 -11.83152 -11.52864 -11.12682 -11.05364 -10.84993 -10.61890 -10.41701 -10.24265 -10.02848 -9.78342 -9.31101 -8.59299 -6.10830 -4.11240 2.17995 2.37175 2.66217 3.31940 3.38990 3.41397 3.47048 3.59634 3.68794 4.04130 4.38720 4.42846 4.49287 4.54223 4.59204 4.94629 5.23630 5.23929 5.30006 5.52019 5.67949 5.77713 5.88763 5.90045 6.23310 6.54877 7.16753 7.23579 7.64612 7.92804 8.41918 8.91067 9.50590 11.01660 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.028567 B = 0.004890 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.911659 B = 5725.050873 C = 6042.388606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.092 4.092 11 C 0.452 3.548 12 O -0.495 6.495 13 O -0.334 6.334 14 C 0.076 3.924 15 H 0.125 0.875 16 C -0.169 4.169 17 C -0.151 4.151 18 C -0.162 4.162 19 C 0.441 3.559 20 F -0.175 7.175 21 F -0.171 7.171 22 F -0.175 7.175 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.023 0.977 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.889 -11.116 1.963 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.129 4.129 11 C 0.296 3.704 12 O -0.380 6.380 13 O -0.252 6.252 14 C 0.018 3.982 15 H 0.142 0.858 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.199 4.199 19 C 0.387 3.613 20 F -0.156 7.156 21 F -0.152 7.152 22 F -0.157 7.157 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.143 0.857 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.944 -10.663 1.927 21.824 hybrid contribution 0.543 0.998 -0.445 1.220 sum 19.486 -9.665 1.482 21.802 Atomic orbital electron populations 1.69903 1.06272 1.27129 1.50419 1.24942 0.94715 0.99173 0.94152 0.86815 0.80539 0.83448 0.78861 1.20101 1.21264 1.18634 1.20996 0.88674 0.94862 1.52086 0.90571 1.19509 0.97084 0.89328 0.98058 1.21610 0.82204 1.03902 1.05216 1.25167 0.93110 0.80879 0.71259 1.90654 1.70149 1.32581 1.44650 1.86852 1.17081 1.36788 1.84480 1.23172 0.81805 1.02720 0.90462 0.85764 1.22119 1.05699 0.98025 0.92907 1.22931 0.97716 1.03678 0.94502 1.23144 0.93242 1.03466 1.00083 1.20806 0.75864 0.74211 0.90432 1.93196 1.90221 1.48953 1.83261 1.93276 1.86144 1.52678 1.83145 1.93189 1.29477 1.96081 1.96929 0.92537 0.95524 0.95905 0.87939 0.87901 0.85697 0.87959 0.87558 0.88078 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.53 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 10 C -0.09 -1.73 5.75 -27.88 -0.16 -1.89 16 11 C 0.45 8.09 7.46 36.00 0.27 8.36 16 12 O -0.50 -10.05 14.40 -18.75 -0.27 -10.32 16 13 O -0.33 -5.03 9.74 -39.24 -0.38 -5.42 16 14 C 0.08 0.97 2.23 -26.74 -0.06 0.91 16 15 H 0.12 1.60 6.92 -51.93 -0.36 1.24 16 16 C -0.17 -1.63 5.05 -90.59 -0.46 -2.09 16 17 C -0.15 -1.26 10.16 -26.73 -0.27 -1.53 16 18 C -0.16 -1.22 10.18 -26.69 -0.27 -1.49 16 19 C 0.44 5.99 2.85 37.16 0.11 6.10 16 20 F -0.17 -2.37 16.68 2.25 0.04 -2.33 16 21 F -0.17 -2.79 15.97 2.25 0.04 -2.76 16 22 F -0.18 -2.16 17.03 2.25 0.04 -2.12 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 25 H 0.02 0.56 7.53 -51.93 -0.39 0.17 16 26 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.13 1.11 7.70 -51.93 -0.40 0.71 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -31.24 292.51 -5.04 -36.28 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -3.64 Total: -3.70 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.37 Total: -4.79 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.65 Total: -15.73 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.11 Total: -7.20 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.24 -5.04 -36.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813075018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.387 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds