Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00313 * 2 1 4 4 H 1.48502 * 109.47268 * 270.00115 * 3 2 1 5 5 H 1.48506 * 109.47206 * 30.00127 * 3 2 1 6 6 H 1.48500 * 109.47197 * 150.00217 * 3 2 1 7 7 C 1.37882 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.20830 * 119.99820 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00242 * 180.02562 * 11 10 9 14 14 C 1.45195 * 117.00393 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.47130 * 29.99860 * 14 13 11 16 16 C 1.52996 * 109.47434 * 149.99773 * 14 13 11 17 17 C 1.53000 * 117.49997 * 300.00472 * 16 14 13 18 18 C 1.53002 * 60.02940 * 252.49592 * 17 16 14 19 19 C 1.52996 * 109.47348 * 270.00122 * 14 13 11 20 20 F 1.39904 * 109.47098 * 299.99912 * 19 14 13 21 21 F 1.39901 * 109.47187 * 59.99644 * 19 14 13 22 22 F 1.39903 * 109.47575 * 180.02562 * 19 14 13 23 23 H 0.97003 * 119.99505 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47175 * 60.00060 * 9 7 2 25 25 H 1.09001 * 109.47032 * 299.99859 * 9 7 2 26 26 H 1.08999 * 109.46872 * 60.00025 * 10 9 7 27 27 H 1.08998 * 109.47138 * 300.00489 * 10 9 7 28 28 H 1.09007 * 115.55004 * 85.67144 * 16 14 13 29 29 H 1.09002 * 117.49833 * 359.97438 * 17 16 14 30 30 H 1.09002 * 117.49953 * 144.99738 * 17 16 14 31 31 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 32 32 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0009 12 8 6.1326 -1.5904 -0.0005 13 8 6.1996 -3.7992 -0.0014 14 6 7.6495 -3.7233 -0.0019 15 1 7.9660 -2.8157 0.5120 16 6 8.2244 -4.9442 0.7190 17 6 7.8309 -5.1504 2.1831 18 6 9.2475 -4.6930 1.8296 19 6 8.1584 -3.6964 -1.4445 20 9 7.7522 -4.8615 -2.1040 21 9 7.6327 -2.5800 -2.1036 22 9 9.5555 -3.6239 -1.4450 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6806 0.8888 25 1 3.8745 -0.6802 -0.8912 26 1 3.6578 -3.1507 -0.8907 27 1 3.6584 -3.1504 0.8892 28 1 8.3577 -5.8340 0.1036 29 1 7.1627 -4.4160 2.6329 30 1 7.7052 -6.1758 2.5309 31 1 9.5110 -3.6578 2.0467 32 1 10.0536 -5.4175 1.9445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813075018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = -241.058715 kcal Electronic energy + Delta-G solvation = -20762.063556 eV Core-core repulsion = 16886.809768 eV Total energy + Delta-G solvation = -3875.253788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.30757 -48.83910 -48.77887 -41.84380 -38.93769 -37.25705 -35.67008 -33.50914 -31.33940 -28.39726 -25.41392 -23.87688 -23.27604 -22.08443 -21.61745 -19.91666 -19.56771 -19.44922 -19.19338 -18.38656 -17.40531 -17.05651 -16.30043 -15.78424 -15.70306 -15.64959 -15.26449 -15.20842 -15.01635 -14.93259 -14.91472 -14.77399 -14.13186 -13.75661 -13.43607 -12.96242 -12.90607 -12.43850 -12.26724 -12.17073 -12.05182 -11.85410 -11.74211 -11.45511 -11.37323 -11.26252 -10.79430 -8.32306 -6.36579 0.91964 1.12618 1.34233 1.36517 1.49157 1.52427 2.33860 2.42622 2.67843 2.82488 2.96746 3.03406 3.41840 3.53833 3.78139 3.84652 4.04900 4.22033 4.30138 4.34896 4.75217 4.76090 4.92933 5.02056 5.07200 5.19647 5.26165 5.33668 5.56461 6.20071 6.53007 6.71793 7.28669 8.83234 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.028567 B = 0.004890 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.911659 B = 5725.050873 C = 6042.388606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.001 3.999 10 C -0.089 4.089 11 C 0.463 3.537 12 O -0.522 6.522 13 O -0.328 6.328 14 C 0.074 3.926 15 H 0.124 0.876 16 C -0.185 4.185 17 C -0.151 4.151 18 C -0.146 4.146 19 C 0.441 3.559 20 F -0.175 7.175 21 F -0.190 7.190 22 F -0.166 7.166 23 H 0.268 0.732 24 H 0.021 0.979 25 H 0.015 0.985 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.847 -11.757 2.554 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.569 4.569 8 H 0.071 0.929 9 C -0.036 4.036 10 C -0.126 4.126 11 C 0.308 3.692 12 O -0.410 6.410 13 O -0.245 6.245 14 C 0.017 3.983 15 H 0.142 0.858 16 C -0.203 4.203 17 C -0.188 4.188 18 C -0.183 4.183 19 C 0.386 3.614 20 F -0.156 7.156 21 F -0.171 7.171 22 F -0.148 7.148 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.152 0.848 29 H 0.109 0.891 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 20.918 -11.334 2.519 23.924 hybrid contribution -0.031 1.083 -0.635 1.256 sum 20.887 -10.251 1.884 23.343 Atomic orbital electron populations 1.70021 1.07863 1.28203 1.52116 1.25774 0.95458 1.02813 0.94116 0.85857 0.79445 0.79464 0.79144 1.19536 1.20425 1.17981 1.21317 0.90806 0.93947 1.50850 0.92907 1.19344 0.94482 0.92547 0.97264 1.21393 0.83442 1.00977 1.06816 1.24709 0.92722 0.81125 0.70661 1.90647 1.70660 1.33637 1.46012 1.86802 1.18838 1.34972 1.83882 1.23485 0.80044 1.04518 0.90261 0.85824 1.22196 1.07563 0.97013 0.93537 1.23028 0.98247 1.04525 0.93023 1.23298 0.93322 1.04253 0.97387 1.20933 0.76250 0.73630 0.90581 1.93195 1.90279 1.48788 1.83338 1.93240 1.86510 1.53763 1.83631 1.93203 1.28663 1.96006 1.96888 0.92284 0.96020 0.96709 0.86794 0.86030 0.84824 0.89075 0.85747 0.87967 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.89 13.96 21.45 0.30 -57.59 16 2 C 0.02 0.95 5.47 84.66 0.46 1.42 16 3 Si 0.94 45.10 27.47 68.60 1.88 46.98 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.97 6.54 99.48 0.65 -11.32 16 7 C -0.53 -29.64 9.66 25.60 0.25 -29.40 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 9 C 0.00 0.06 3.33 29.85 0.10 0.16 16 10 C -0.09 -3.26 5.75 29.85 0.17 -3.09 16 11 C 0.46 16.01 7.46 71.24 0.53 16.54 16 12 O -0.52 -20.71 14.40 21.95 0.32 -20.39 16 13 O -0.33 -9.37 9.74 -51.37 -0.50 -9.87 16 14 C 0.07 1.77 2.23 30.59 0.07 1.84 16 15 H 0.12 3.01 6.92 -2.39 -0.02 2.99 16 16 C -0.18 -3.11 5.05 -10.77 -0.05 -3.17 16 17 C -0.15 -2.12 10.16 30.60 0.31 -1.81 16 18 C -0.15 -1.74 10.18 30.62 0.31 -1.42 16 19 C 0.44 11.37 2.85 71.98 0.21 11.57 16 20 F -0.17 -4.47 16.68 44.97 0.75 -3.72 16 21 F -0.19 -6.07 15.97 44.97 0.72 -5.35 16 22 F -0.17 -3.81 17.03 44.97 0.77 -3.05 16 23 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 24 H 0.02 1.03 7.16 -2.39 -0.02 1.02 16 25 H 0.01 0.71 7.53 -2.39 -0.02 0.69 16 26 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 27 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 28 H 0.13 2.02 7.70 -2.38 -0.02 2.01 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.22 8.05 -2.39 -0.02 1.20 16 32 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -66.38 292.51 7.67 -58.70 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.08 Total: 1.64 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 2.35 Total: -7.36 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.30 Total: -57.59 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.18 Total: -30.27 kcal Atomic # 9 Polarization: -14.34 SS G_CDS: 2.23 Total: -12.11 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -66.38 7.67 -58.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813075018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.356 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds