Wall clock time and date at job start Mon Mar 30 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31453 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48506 * 109.47028 * 270.00111 * 3 2 1 5 5 H 1.48498 * 109.47068 * 29.99850 * 3 2 1 6 6 H 1.48497 * 109.46792 * 150.00325 * 3 2 1 7 7 C 1.38746 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99719 * 179.97438 * 7 2 1 9 9 O 1.34919 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99907 * 179.97438 * 9 7 2 11 11 O 1.21216 * 120.00230 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99817 * 180.02562 * 10 9 7 13 13 H 1.08992 * 109.47292 * 10.27403 * 12 10 9 14 14 C 1.53000 * 109.47155 * 250.27358 * 12 10 9 15 15 C 1.53001 * 109.46889 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47317 * 60.00250 * 15 14 12 17 17 C 1.53000 * 109.46937 * 299.99721 * 16 15 14 18 18 C 1.53001 * 109.46775 * 130.27338 * 12 10 9 19 19 H 1.09003 * 109.47316 * 60.00416 * 18 12 10 20 20 C 1.53000 * 109.47296 * 299.99934 * 18 12 10 21 21 F 1.39902 * 109.46955 * 305.65011 * 20 18 12 22 22 F 1.39896 * 109.46756 * 65.65256 * 20 18 12 23 23 F 1.39899 * 109.46801 * 185.65132 * 20 18 12 24 24 H 0.97000 * 119.99877 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47332 * 299.99827 * 14 12 10 26 26 H 1.09000 * 109.47146 * 59.99929 * 14 12 10 27 27 H 1.08998 * 109.46952 * 299.99442 * 15 14 12 28 28 H 1.09007 * 109.46985 * 180.02562 * 15 14 12 29 29 H 1.09003 * 109.46959 * 179.97438 * 16 15 14 30 30 H 1.08992 * 109.47380 * 59.99686 * 16 15 14 31 31 H 1.09000 * 109.47146 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47332 * 300.00524 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4459 2.6527 0.7000 6 1 3.5460 1.4401 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2756 -3.4331 -0.0020 12 6 1.3809 -4.8392 -0.0023 13 1 0.3150 -4.7038 -0.1850 14 6 1.5837 -5.5156 1.3550 15 6 0.8896 -6.8791 1.3541 16 6 1.4890 -7.7558 0.2528 17 6 1.2862 -7.0794 -1.1045 18 6 1.9798 -5.7162 -1.1037 19 1 3.0459 -5.8517 -0.9209 20 6 1.7770 -5.0398 -2.4610 21 9 0.4201 -4.7493 -2.6392 22 9 2.5177 -3.8538 -2.5062 23 9 2.2078 -5.8978 -3.4786 24 1 -0.4850 0.8401 0.0004 25 1 2.6497 -5.6512 1.5378 26 1 1.1571 -4.8908 2.1397 27 1 -0.1764 -6.7440 1.1712 28 1 1.0337 -7.3609 2.3213 29 1 0.9948 -8.7274 0.2524 30 1 2.5550 -7.8909 0.4357 31 1 1.7129 -7.7042 -1.8892 32 1 0.2202 -6.9443 -1.2875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850279198.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:42 Heat of formation + Delta-G solvation = -258.475194 kcal Electronic energy + Delta-G solvation = -21831.083692 eV Core-core repulsion = 17955.074668 eV Total energy + Delta-G solvation = -3876.009024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.70293 -47.23894 -47.06468 -39.59969 -37.80584 -35.03065 -32.12346 -31.79819 -31.02739 -26.05249 -25.15962 -23.36681 -21.90943 -20.50473 -19.53749 -17.95822 -17.81129 -17.70151 -17.23559 -16.64441 -15.03996 -14.62651 -14.47285 -14.29388 -14.15891 -14.01657 -13.78072 -13.67483 -13.51758 -13.22515 -13.19822 -12.85413 -12.41155 -12.30238 -11.80668 -11.56061 -11.28668 -11.19863 -11.14362 -10.64980 -10.52974 -10.44553 -10.36806 -10.14319 -9.76930 -8.92697 -8.53952 -6.37462 -4.04473 3.09034 3.12013 3.21097 3.27118 3.46427 3.88374 4.07909 4.22606 4.28041 4.56577 4.79723 4.92023 5.03581 5.14257 5.17937 5.27593 5.35815 5.39291 5.48222 5.70411 5.81881 5.98226 6.01206 6.05019 6.08212 6.26329 6.42149 6.76099 7.43284 7.99011 8.74036 9.11265 9.88179 10.80425 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025017 B = 0.007074 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.953930 B = 3957.060235 C = 4498.439531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.378 4.378 8 H 0.095 0.905 9 O -0.208 6.208 10 C 0.395 3.605 11 O -0.549 6.549 12 C -0.070 4.070 13 H 0.103 0.897 14 C -0.103 4.103 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.117 4.117 19 H 0.122 0.878 20 C 0.448 3.552 21 F -0.180 7.180 22 F -0.164 7.164 23 F -0.191 7.191 24 H 0.269 0.731 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 -14.077 -0.547 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.113 0.887 9 O -0.115 6.115 10 C 0.241 3.759 11 O -0.446 6.446 12 C -0.090 4.090 13 H 0.121 0.879 14 C -0.140 4.140 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.137 4.137 19 H 0.140 0.860 20 C 0.394 3.606 21 F -0.162 7.162 22 F -0.146 7.146 23 F -0.172 7.172 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.471 -13.858 -0.579 13.878 hybrid contribution 0.382 1.046 -0.358 1.169 sum 0.853 -12.812 -0.937 12.875 Atomic orbital electron populations 1.70002 1.05967 1.27611 1.46557 1.25329 0.95806 0.98828 0.96260 0.85698 0.79045 0.79850 0.78759 1.19876 1.20336 1.19107 1.21215 0.92361 0.79814 1.52068 0.88697 1.83882 1.39281 1.13312 1.75005 1.22838 0.86734 0.86991 0.79312 1.90547 1.15406 1.87905 1.50746 1.20732 1.01809 0.90444 0.95996 0.87876 1.21428 1.02106 0.95858 0.94656 1.21590 1.00355 0.95045 0.98771 1.21501 1.01692 0.98437 0.93593 1.21615 1.01438 0.93223 0.99175 1.22398 1.05402 0.96446 0.89409 0.86001 1.20607 0.74228 0.77842 0.87968 1.93175 1.33087 1.93802 1.96124 1.93310 1.76577 1.48107 1.96562 1.93124 1.89863 1.70493 1.63737 0.92123 0.90723 0.90419 0.91352 0.91258 0.91195 0.91420 0.90346 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.94 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.38 -11.41 9.64 30.92 0.30 -11.11 16 8 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 9 O -0.21 -6.07 9.75 -20.70 -0.20 -6.27 16 10 C 0.40 9.74 4.73 36.01 0.17 9.91 16 11 O -0.55 -14.57 15.17 -19.06 -0.29 -14.86 16 12 C -0.07 -1.27 1.95 -91.77 -0.18 -1.45 16 13 H 0.10 1.85 7.67 -51.93 -0.40 1.45 16 14 C -0.10 -1.50 5.19 -26.73 -0.14 -1.64 16 15 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 16 C -0.11 -1.11 5.92 -26.73 -0.16 -1.26 16 17 C -0.12 -1.34 4.95 -26.75 -0.13 -1.47 16 18 C -0.12 -1.82 1.64 -90.64 -0.15 -1.97 16 19 H 0.12 1.90 7.95 -51.93 -0.41 1.48 16 20 C 0.45 8.08 2.63 37.16 0.10 8.17 16 21 F -0.18 -3.37 16.28 2.25 0.04 -3.33 16 22 F -0.16 -3.69 14.65 2.25 0.03 -3.65 16 23 F -0.19 -3.07 16.58 2.25 0.04 -3.03 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.80 7.67 -51.93 -0.40 0.40 16 32 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 LS Contribution 280.30 15.07 4.22 4.22 Total: -1.00 -33.40 280.30 -4.52 -37.92 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.65 Total: -1.59 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.45 Total: -1.17 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.76 Total: -25.00 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.49 Total: -21.13 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 0.11 Total: -10.01 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.40 -4.52 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850279198.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.556 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds