Wall clock time and date at job start Mon Mar 30 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47188 * 269.99600 * 3 2 1 5 5 H 1.48505 * 109.47091 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47273 * 149.99603 * 3 2 1 7 7 C 1.37884 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99545 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00136 * 180.02562 * 7 2 1 10 10 C 1.53513 * 114.16792 * 180.02562 * 9 7 2 11 11 N 1.47485 * 87.93245 * 220.33247 * 10 9 7 12 12 C 1.39842 * 111.00292 * 138.70383 * 11 10 9 13 13 C 1.38827 * 120.07954 * 305.86184 * 12 11 10 14 14 C 1.38157 * 119.94684 * 180.02562 * 13 12 11 15 15 C 1.38270 * 120.11283 * 0.02562 * 14 13 12 16 16 N 1.48006 * 119.91680 * 179.97438 * 15 14 13 17 17 O 1.21799 * 119.99558 * 180.02562 * 16 15 14 18 18 O 1.21797 * 120.00042 * 0.02562 * 16 15 14 19 19 C 1.38292 * 120.16089 * 359.97438 * 15 14 13 20 20 C 1.38276 * 120.04833 * 0.27716 * 19 15 14 21 21 F 1.35107 * 120.05438 * 179.72334 * 20 19 15 22 22 C 1.47484 * 87.83354 * 27.01163 * 11 10 9 23 23 H 0.96998 * 120.00196 * 0.02562 * 1 2 3 24 24 H 1.08993 * 113.38430 * 313.08195 * 9 7 2 25 25 H 1.08995 * 113.47570 * 105.56795 * 10 9 7 26 26 H 1.08993 * 113.53440 * 335.10615 * 10 9 7 27 27 H 1.07997 * 120.02586 * 0.02562 * 13 12 11 28 28 H 1.08000 * 119.94353 * 180.02562 * 14 13 12 29 29 H 1.08004 * 119.97110 * 179.97438 * 19 15 14 30 30 H 1.08996 * 113.47259 * 87.76014 * 22 11 10 31 31 H 1.09003 * 113.47286 * 218.22428 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.1400 -2.5947 0.0010 11 7 5.1429 -2.0864 0.9555 12 6 5.4006 -3.0254 1.9592 13 6 4.3549 -3.5492 2.7072 14 6 4.6127 -4.4762 3.6985 15 6 5.9105 -4.8830 3.9474 16 7 6.1818 -5.8760 5.0109 17 8 7.3246 -6.2349 5.2317 18 8 5.2623 -6.3341 5.6652 19 6 6.9557 -4.3642 3.2052 20 6 6.7058 -3.4320 2.2148 21 9 7.7274 -2.9210 1.4934 22 6 4.1394 -1.1007 1.3988 23 1 -0.4850 0.8400 -0.0004 24 1 3.9444 -0.5110 -0.7295 25 1 4.5629 -2.8808 -0.9619 26 1 3.4910 -3.3630 0.4213 27 1 3.3407 -3.2321 2.5142 28 1 3.7990 -4.8840 4.2801 29 1 7.9683 -4.6837 3.4025 30 1 3.4896 -1.4696 2.1924 31 1 4.5619 -0.1206 1.6204 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853805036.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:11 Heat of formation + Delta-G solvation = 25.701787 kcal Electronic energy + Delta-G solvation = -19560.905887 eV Core-core repulsion = 16147.908888 eV Total energy + Delta-G solvation = -3412.996999 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.06247 -42.31704 -40.82594 -38.26430 -36.69838 -33.17975 -31.90269 -31.23781 -28.90375 -26.25217 -25.50378 -24.15324 -23.37058 -21.75992 -19.76813 -19.04336 -18.71435 -17.69686 -17.67550 -16.83147 -16.52343 -16.30362 -15.89471 -14.91079 -14.73873 -14.24457 -13.98360 -13.58648 -13.07663 -12.85127 -12.68327 -12.27912 -12.05353 -11.71343 -11.35523 -11.31112 -11.27095 -10.94368 -10.42254 -10.20268 -10.02145 -9.56548 -9.45171 -9.18207 -8.82567 -8.68212 -6.32285 -4.35962 -0.39886 0.59429 1.11352 1.19991 2.88053 3.14514 3.24332 3.25631 3.67342 3.93249 4.20657 4.22193 4.43536 4.54349 4.88417 4.90899 4.98167 5.35004 5.46318 5.55681 5.61362 5.68430 5.83411 5.87513 6.10591 6.14357 6.33113 6.35239 6.38466 7.00126 7.35036 7.44395 7.50384 8.22777 8.69089 9.28931 10.79295 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.004886 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.125612 B = 5728.716307 C = 6294.609635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.007 3.993 10 C 0.015 3.985 11 N -0.459 5.459 12 C 0.099 3.901 13 C -0.125 4.125 14 C -0.051 4.051 15 C -0.035 4.035 16 N 0.033 4.967 17 O -0.164 6.164 18 O -0.157 6.157 19 C -0.092 4.092 20 C 0.120 3.880 21 F -0.112 7.112 22 C -0.012 4.012 23 H 0.268 0.732 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.169 0.831 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.079 0.921 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 -6.444 5.577 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.557 4.557 8 H 0.096 0.904 9 C -0.012 4.012 10 C -0.111 4.111 11 N -0.180 5.180 12 C 0.002 3.998 13 C -0.146 4.146 14 C -0.070 4.070 15 C -0.119 4.119 16 N 0.552 4.448 17 O -0.379 6.379 18 O -0.373 6.373 19 C -0.112 4.112 20 C 0.098 3.902 21 F -0.090 7.090 22 C -0.139 4.139 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.187 0.813 28 H 0.177 0.823 29 H 0.182 0.818 30 H 0.097 0.903 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.903 -5.614 4.804 13.171 hybrid contribution -0.016 0.436 0.557 0.707 sum 10.888 -5.178 5.360 13.194 Atomic orbital electron populations 1.69888 1.06437 1.27515 1.48755 1.25010 0.94659 0.99305 0.93574 0.86889 0.80606 0.83366 0.78961 1.20014 1.21243 1.18290 1.20829 0.87669 0.94780 1.52455 0.90432 1.20536 0.96778 0.92092 0.91816 1.24126 0.90884 1.00430 0.95653 1.67103 1.34266 1.08128 1.08512 1.20302 0.91706 0.93541 0.94218 1.21877 1.01675 0.96116 0.94893 1.21021 0.94700 0.94827 0.96501 1.20698 0.95878 0.99269 0.96019 1.43490 1.00519 1.00103 1.00639 1.94536 1.07271 1.63171 1.72879 1.94546 1.38081 1.57494 1.47216 1.20761 1.00804 0.95680 0.93963 1.17028 0.84182 0.96052 0.92896 1.91573 1.56740 1.85126 1.75570 1.24859 0.91163 0.95184 1.02678 0.92248 0.91852 0.90320 0.90825 0.81323 0.82271 0.81811 0.90336 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 13.96 55.43 0.77 -24.11 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 19.45 27.14 -169.99 -4.61 14.84 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.41 5.69 56.52 0.32 -5.09 16 7 C -0.52 -12.76 9.37 -34.44 -0.32 -13.08 16 8 H 0.08 2.06 8.06 -52.49 -0.42 1.64 16 9 C 0.01 0.15 2.96 -91.24 -0.27 -0.12 16 10 C 0.01 0.25 7.10 -7.54 -0.05 0.20 16 11 N -0.46 -7.77 6.29 -180.48 -1.13 -8.90 16 12 C 0.10 1.45 5.25 -83.67 -0.44 1.01 16 13 C -0.13 -1.61 7.81 -39.39 -0.31 -1.92 16 14 C -0.05 -0.59 9.55 -39.60 -0.38 -0.97 16 15 C -0.04 -0.44 6.85 -79.92 -0.55 -0.99 16 16 N 0.03 0.46 4.45 33.98 0.15 0.61 16 17 O -0.16 -2.31 18.44 -29.46 -0.54 -2.85 16 18 O -0.16 -2.22 18.44 -29.46 -0.54 -2.77 16 19 C -0.09 -1.10 9.53 -39.55 -0.38 -1.48 16 20 C 0.12 1.63 7.31 -39.26 -0.29 1.34 16 21 F -0.11 -1.63 17.08 2.25 0.04 -1.59 16 22 C -0.01 -0.23 6.49 -7.54 -0.05 -0.28 16 23 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.06 1.33 7.04 -51.93 -0.37 0.96 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.22 6.61 -51.93 -0.34 0.87 16 27 H 0.17 2.18 6.06 -52.49 -0.32 1.87 16 28 H 0.16 1.57 7.60 -52.49 -0.40 1.17 16 29 H 0.16 1.67 7.60 -52.48 -0.40 1.27 16 30 H 0.08 1.37 5.80 -51.93 -0.30 1.07 16 31 H 0.08 1.41 7.12 -51.93 -0.37 1.04 16 LS Contribution 275.72 15.07 4.16 4.16 Total: -1.00 -26.93 275.72 -7.40 -34.33 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -2.56 Total: 0.63 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -3.13 Total: -14.34 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: -0.21 Total: -32.40 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -1.09 Total: -5.62 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.61 Total: 14.84 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.93 -7.40 -34.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853805036.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.032 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds