Wall clock time and date at job start Mon Mar 30 2020 06:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47188 * 269.99600 * 3 2 1 5 5 H 1.48505 * 109.47091 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47273 * 149.99603 * 3 2 1 7 7 C 1.37884 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99545 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00136 * 180.02562 * 7 2 1 10 10 C 1.53513 * 114.16792 * 180.02562 * 9 7 2 11 11 N 1.47485 * 87.93245 * 220.33247 * 10 9 7 12 12 C 1.39842 * 111.00292 * 138.70383 * 11 10 9 13 13 C 1.38827 * 120.07954 * 305.86184 * 12 11 10 14 14 C 1.38157 * 119.94684 * 180.02562 * 13 12 11 15 15 C 1.38270 * 120.11283 * 0.02562 * 14 13 12 16 16 N 1.48006 * 119.91680 * 179.97438 * 15 14 13 17 17 O 1.21799 * 119.99558 * 180.02562 * 16 15 14 18 18 O 1.21797 * 120.00042 * 0.02562 * 16 15 14 19 19 C 1.38292 * 120.16089 * 359.97438 * 15 14 13 20 20 C 1.38276 * 120.04833 * 0.27716 * 19 15 14 21 21 F 1.35107 * 120.05438 * 179.72334 * 20 19 15 22 22 C 1.47484 * 87.83354 * 27.01163 * 11 10 9 23 23 H 0.96998 * 120.00196 * 0.02562 * 1 2 3 24 24 H 1.08993 * 113.38430 * 313.08195 * 9 7 2 25 25 H 1.08995 * 113.47570 * 105.56795 * 10 9 7 26 26 H 1.08993 * 113.53440 * 335.10615 * 10 9 7 27 27 H 1.07997 * 120.02586 * 0.02562 * 13 12 11 28 28 H 1.08000 * 119.94353 * 180.02562 * 14 13 12 29 29 H 1.08004 * 119.97110 * 179.97438 * 19 15 14 30 30 H 1.08996 * 113.47259 * 87.76014 * 22 11 10 31 31 H 1.09003 * 113.47286 * 218.22428 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.1400 -2.5947 0.0010 11 7 5.1429 -2.0864 0.9555 12 6 5.4006 -3.0254 1.9592 13 6 4.3549 -3.5492 2.7072 14 6 4.6127 -4.4762 3.6985 15 6 5.9105 -4.8830 3.9474 16 7 6.1818 -5.8760 5.0109 17 8 7.3246 -6.2349 5.2317 18 8 5.2623 -6.3341 5.6652 19 6 6.9557 -4.3642 3.2052 20 6 6.7058 -3.4320 2.2148 21 9 7.7274 -2.9210 1.4934 22 6 4.1394 -1.1007 1.3988 23 1 -0.4850 0.8400 -0.0004 24 1 3.9444 -0.5110 -0.7295 25 1 4.5629 -2.8808 -0.9619 26 1 3.4910 -3.3630 0.4213 27 1 3.3407 -3.2321 2.5142 28 1 3.7990 -4.8840 4.2801 29 1 7.9683 -4.6837 3.4025 30 1 3.4896 -1.4696 2.1924 31 1 4.5619 -0.1206 1.6204 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853805036.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:10 Heat of formation + Delta-G solvation = 10.066409 kcal Electronic energy + Delta-G solvation = -19561.583888 eV Core-core repulsion = 16147.908888 eV Total energy + Delta-G solvation = -3413.674999 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.14643 -43.37904 -42.10259 -39.43487 -37.77406 -34.92513 -33.30558 -32.25277 -30.31855 -27.63901 -26.92267 -25.51437 -24.48698 -22.95366 -20.90773 -20.37807 -19.90164 -19.34270 -18.72949 -18.05494 -17.66187 -17.56583 -16.99821 -16.29759 -16.18198 -15.56213 -15.38126 -14.80830 -14.63724 -14.11309 -13.90959 -13.50751 -13.31848 -13.04664 -12.78395 -12.64464 -12.40357 -12.36158 -11.98357 -11.89239 -11.64406 -11.21988 -10.70301 -10.61956 -10.27786 -10.09912 -8.30296 -6.36659 -1.46890 -0.40020 0.02744 0.15356 1.38592 1.43001 1.51608 1.84962 2.36349 2.56108 2.79860 3.02758 3.19891 3.39517 3.50822 3.79180 3.92167 4.02985 4.19260 4.31331 4.39654 4.49011 4.58080 4.70554 4.78173 4.89690 4.97071 4.97566 5.22692 5.37471 5.57157 6.03956 6.26110 6.40128 6.70740 7.31508 8.84676 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.004886 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.125612 B = 5728.716307 C = 6294.609635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.236 1.236 7 C -0.512 4.512 8 H 0.045 0.955 9 C -0.008 4.008 10 C 0.023 3.977 11 N -0.459 5.459 12 C 0.081 3.919 13 C -0.121 4.121 14 C -0.037 4.037 15 C -0.036 4.036 16 N 0.033 4.967 17 O -0.168 6.168 18 O -0.165 6.165 19 C -0.077 4.077 20 C 0.117 3.883 21 F -0.118 7.118 22 C -0.004 4.004 23 H 0.267 0.733 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.168 0.832 28 H 0.179 0.821 29 H 0.184 0.816 30 H 0.084 0.916 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.344 -6.733 6.385 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.159 1.159 7 C -0.550 4.550 8 H 0.063 0.937 9 C -0.028 4.028 10 C -0.103 4.103 11 N -0.179 5.179 12 C -0.016 4.016 13 C -0.141 4.141 14 C -0.057 4.057 15 C -0.119 4.119 16 N 0.551 4.449 17 O -0.383 6.383 18 O -0.380 6.380 19 C -0.097 4.097 20 C 0.096 3.904 21 F -0.096 7.096 22 C -0.130 4.130 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.185 0.815 28 H 0.197 0.803 29 H 0.201 0.799 30 H 0.102 0.898 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.786 -5.926 5.623 15.173 hybrid contribution -0.570 0.384 0.327 0.761 sum 12.216 -5.542 5.950 14.674 Atomic orbital electron populations 1.70027 1.08277 1.28237 1.51572 1.25791 0.95198 1.02856 0.93682 0.85947 0.80177 0.79054 0.79025 1.19936 1.21760 1.15858 1.21035 0.89948 0.93312 1.50701 0.93656 1.20500 0.94101 0.94598 0.93559 1.24008 0.90931 0.98654 0.96680 1.66979 1.33344 1.08519 1.09065 1.20305 0.92648 0.94104 0.94497 1.21783 1.01113 0.96263 0.94953 1.21169 0.95050 0.93732 0.95726 1.20767 0.96338 0.99032 0.95748 1.43609 1.00399 1.00143 1.00720 1.94537 1.07347 1.63357 1.73039 1.94551 1.38059 1.57821 1.47572 1.20864 1.01667 0.94428 0.92720 1.17007 0.83597 0.96506 0.93318 1.91561 1.56926 1.85316 1.75823 1.24624 0.91446 0.95979 1.00987 0.92427 0.91971 0.89219 0.90280 0.81499 0.80322 0.79898 0.89785 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.09 13.96 21.45 0.30 -53.79 16 2 C 0.02 1.23 5.47 84.66 0.46 1.69 16 3 Si 0.93 39.88 27.14 68.60 1.86 41.74 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.24 -9.07 5.69 99.48 0.57 -8.50 16 7 C -0.51 -25.36 9.37 25.60 0.24 -25.12 16 8 H 0.05 2.48 8.06 -2.91 -0.02 2.45 16 9 C -0.01 -0.32 2.96 -11.20 -0.03 -0.36 16 10 C 0.02 0.76 7.10 83.58 0.59 1.35 16 11 N -0.46 -14.55 6.29 -724.93 -4.56 -19.11 16 12 C 0.08 2.18 5.25 38.21 0.20 2.39 16 13 C -0.12 -2.84 7.81 22.39 0.17 -2.66 16 14 C -0.04 -0.76 9.55 22.26 0.21 -0.55 16 15 C -0.04 -0.79 6.85 36.40 0.25 -0.54 16 16 N 0.03 0.83 4.45 -46.42 -0.21 0.62 16 17 O -0.17 -4.33 18.44 18.89 0.35 -3.98 16 18 O -0.16 -4.29 18.44 18.89 0.35 -3.94 16 19 C -0.08 -1.61 9.53 22.29 0.21 -1.40 16 20 C 0.12 2.88 7.31 22.48 0.16 3.05 16 21 F -0.12 -3.16 17.08 44.97 0.77 -2.39 16 22 C 0.00 -0.12 6.49 83.58 0.54 0.42 16 23 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 24 H 0.06 2.51 7.04 -2.39 -0.02 2.49 16 25 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.08 2.52 6.61 -2.39 -0.02 2.50 16 27 H 0.17 4.03 6.06 -2.91 -0.02 4.02 16 28 H 0.18 2.97 7.60 -2.91 -0.02 2.95 16 29 H 0.18 3.12 7.60 -2.91 -0.02 3.10 16 30 H 0.08 2.80 5.80 -2.39 -0.01 2.79 16 31 H 0.08 2.67 7.12 -2.39 -0.02 2.65 16 Total: -1.00 -57.35 275.72 2.92 -54.43 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.04 Total: 8.14 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.02 Total: -21.72 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -4.47 Total: -72.28 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.70 Total: -7.92 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.77 Total: -2.39 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.86 Total: 41.74 kcal Total: -57.35 2.92 -54.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853805036.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.498 kcal (2) G-P(sol) polarization free energy of solvation -57.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds